Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008505

Physical Location & Seq

Genomic Coordinates Reverse (-)

29035000 .. 29039584

Gene Structure 4585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGGAGCCAATCACTCTCATGGACATCGACGAAGATGACAATTCATCTCTAAAAACCAGCAACAACAAAGGCAAAAACGTCGCCGTCGCCGTCGCTGCCCCTTCCCACGGCAAAGCCACGCCGTGGGTCGAGAAGTACCGCCCTCATTCCCTCGCGGACGTCGCTGCTCACCGCGACATTGTCGACACCATTGATAGGCTCACTAGTGAGAACCGATTGCCACACCTCCTATTGTATGGTCCTCCTGGAACTGGCAAAACTTCAACGATACTTGCTGTGGCACGCAAGCTGTATGGAGCACAGTACCACAATATGATTTTGGAGTTGAATGCATCCGATGACAGGGGGATCGATGTTGTGCGACAACAAATTCAAGATTTTGCTAGCACGCAGAGTTTCTCGTTTGGGGGTGAGAGTGCAAAGTCATCTGTCAAAATGGTCTTGCTGGATGAGGCAGATGCTATGACAAAGGATGCTCAATTTTCTTTGCGAAGAGTAATTGAGAAATACACAAAGAACACTAGGTTCTCACTAATCTGCAATCATGTCAACAAGATTATTCCAGCATTACAATCCAGATGTACTCGTTTTCGATTTGCTCCACTTGAGGAGTTTCATGTCTCAGAGAGACTTAAACATGTTATAGAGGCTGAAGGGCTTGATGTGCCTGCGAGTGGTTTAGTGGCAGTTGTACGGCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACTCATATGGCTTCACAGCAGATAACTGAAGAAGCAGTATATCTTTGCACAGGAAATCCATTGCCCAAAGATATTGAGCAAATGTCTTACTGGCTTTTGAACGAATCATTTGCTGAGAGTTTCAAAACAATATCTGATATGAAAGCAAGAAAAGGATTGGCTTTGATAGATATTGTAAGAGAAGTGACCATGTTCGTTTTTAAGATTCAGATGCCAGCAGATGTTCGCGTTCAGTTGATTAACGATTTAGCTGACATAGAGTACAGGTTGACCTTTGGGTGCAACGATAAGTTGCAACTCGGATCACTGATAGCCACTTTCACAAAAGCTCGATCTGCACTTGTTGCAGCTGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

368

Amino Acids

40.77

Weight (kDa)

7.12

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	40 - 179	2.2e-09	Rad17 P-loop domain
DNA_pol3_delta2	PF13177	61 - 203	1.9e-09	DNA polymerase III, delta subunit
AAA	PF00004	77 - 202	5.3e-15	ATPase family associated with various cellular activities (AAA)
RCF1-5-like_lid	PF21960	211 - 250	2.3e-06	RCF1/5-like, AAA+ ATPase lid domain
Rep_fac_C	PF08542	268 - 353	1.9e-22	Replication factor C C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77470
fragaria_vesca	FvH4_2g27410 FvH4_2g27410 FvH4_2g27410
malus_domestica	MD00G1028800.v1.1 MD15G1345300.v1.1
prunus_persica	Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1
pyrus_communis	pycom08g13720 pycom15g30980
rosa_chinensis	RchiOBHm_Chr6g0296261
rosa_laevigata	RLG00000011712
rosa_multiflora	Rmu_sc0004708.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171690 Rroxscaffold_7G00178370
rosa_rugosa	Rorug06G0260300.1 Rorug06G0260400.1
rosa_samantha	Rh6AG372100 Rh6BG380100 Rh6CG385500 Rh6DG372700
rosa_wichuraiana	Rw6G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	3 cut(s)	158, 177, 972
AciI	CCGC	4 cut(s)	5, 142, 158, 175
AclWI	GGATC	2 cut(s)	359, 1054
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	2 cut(s)	675, 792
AcyI	GRCGYC	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	5 cut(s)	140, 308, 586, 696, 1007
AfiI	CCNNNNNNNGG	6 cut(s)	110, 126, 198, 254, 345, 677
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	6 cut(s)	267, 331, 377, 730, 844, 868
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	4 cut(s)	292, 995, 1073, 1094
AluI	AGCT	4 cut(s)	292, 995, 1073, 1094
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	625, 628
AlwI	GGATC	2 cut(s)	359, 1054
ApeKI	GCWGC	4 cut(s)	98, 167, 1091, 1094
ApoI	RAATTY	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	164, 425, 722
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	85, 154, 1081
BceAI	ACGGC	5 cut(s)	71, 77, 109, 127, 713
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 836, 870
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	625, 628
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	3 cut(s)	207, 387, 525
BisI	GCNGC	4 cut(s)	99, 168, 1092, 1095
BlpI	GCTNAGC	1 cut(s)	701
BlsI	GCNGC	4 cut(s)	100, 169, 1093, 1096
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	4 cut(s)	344, 451, 466, 945
BmtI	GCTAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	109, 125
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 126, 198, 254, 345, 677
Bse1I	ACTGG	2 cut(s)	259, 839
Bse3DI	GCAATG	2 cut(s)	712, 803
BseBI	CCWGG	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	109, 125
BseGI	GGATG	3 cut(s)	335, 457, 481
BseLI	CCNNNNNNNGG	6 cut(s)	110, 126, 198, 254, 345, 677
BseMI	GCAATG	2 cut(s)	712, 803
BseMII	CTCAG	2 cut(s)	639, 849
BseNI	ACTGG	2 cut(s)	259, 839
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	85, 154, 1081
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	3 cut(s)	158, 177, 972
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	304
BslI	CCNNNNNNNGG	6 cut(s)	110, 126, 198, 254, 345, 677
BsmAI	GTCTC	2 cut(s)	625, 628
BsmI	GAATGC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	351, 1046, 1076
Bsp1720I	GCTNAGC	1 cut(s)	701
BspACI	CCGC	4 cut(s)	5, 142, 158, 175
BspCNI	CTCAG	2 cut(s)	638, 850
BspDI	ATCGAT	1 cut(s)	354
BspFNI	CGCG	3 cut(s)	158, 177, 972
BspLI	GGNNCC	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	359, 1054
BsrDI	GCAATG	2 cut(s)	712, 803
BsrI	ACTGG	2 cut(s)	259, 839
BssECI	CCNNGG	2 cut(s)	109, 125
BssMI	GATC	3 cut(s)	351, 1046, 1076
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	6 cut(s)	286, 290, 388, 392, 672, 960
BstDEI	CTNAG	3 cut(s)	625, 701, 858
BstDSI	CCRYGG	2 cut(s)	109, 125
BstF5I	GGATG	3 cut(s)	335, 457, 481
BstFNI	CGCG	3 cut(s)	158, 177, 972
BstKTI	GATC	3 cut(s)	354, 1049, 1079
BstMAI	GTCTC	2 cut(s)	625, 628
BstMBI	GATC	3 cut(s)	351, 1046, 1076
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 164, 667, 1079, 1088
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	247
BstUI	CGCG	3 cut(s)	158, 177, 972
BstV1I	GCAGC	3 cut(s)	85, 154, 1081
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	2 cut(s)	109, 125
BtsCI	GGATG	3 cut(s)	335, 457, 481
BtsIMutI	CAGTG	1 cut(s)	1049
Cac8I	GCNNGC	6 cut(s)	286, 290, 388, 392, 672, 960
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	139, 307, 585, 695, 1006
CviAII	CATG	6 cut(s)	22, 548, 620, 641, 715, 934
CviQI	GTAC	5 cut(s)	139, 307, 585, 695, 1006
DdeI	CTNAG	3 cut(s)	625, 701, 858
DpnI	GATC	3 cut(s)	353, 1048, 1078
DpnII	GATC	3 cut(s)	351, 1046, 1076
DraIII	CACNNNGTG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	2 cut(s)	675, 792
EcoRII	CCWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	6 cut(s)	25, 551, 623, 644, 718, 937
FatI	CATG	6 cut(s)	21, 547, 619, 640, 714, 933
FauNDI	CATATG	1 cut(s)	750
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	99, 168, 1092, 1095
FokI	GGATG	3 cut(s)	322, 464, 488
Fsp4HI	GCNGC	4 cut(s)	99, 168, 1092, 1095
FspBI	CTAG	3 cut(s)	207, 387, 525
GluI	GCNGC	4 cut(s)	99, 168, 1092, 1095
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	25, 551, 623, 644, 718, 937
HincII	GTYRAC	4 cut(s)	187, 553, 744, 1014
HindII	GTYRAC	4 cut(s)	187, 553, 744, 1014
HinfI	GANTC	2 cut(s)	848, 949
HphI	GGTGA	3 cut(s)	164, 425, 722
Hpy166II	GTNNAC	4 cut(s)	187, 553, 744, 1014
Hpy188I	TCNGA	5 cut(s)	340, 628, 880, 954, 1046
Hpy188III	TCNNGA	3 cut(s)	133, 377, 579
Hpy8I	GTNNAC	4 cut(s)	187, 553, 744, 1014
Hpy99I	CGWCG	5 cut(s)	35, 86, 92, 98, 167
HpyAV	CCTTC	2 cut(s)	114, 650
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	2 cut(s)	81, 162
HpyCH4V	TGCA	9 cut(s)	335, 422, 543, 739, 792, 1026, 1039, 1082, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 164, 667, 1079, 1088
HpyF3I	CTNAG	3 cut(s)	625, 701, 858
HpySE526I	ACGT	2 cut(s)	81, 162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	6 cut(s)	25, 551, 623, 644, 718, 937
Kzo9I	GATC	3 cut(s)	351, 1046, 1076
LmnI	GCTCC	3 cut(s)	7, 299, 607
Lsp1109I	GCAGC	3 cut(s)	85, 154, 1081
LweI	GCATC	4 cut(s)	344, 451, 466, 945
MaeI	CTAG	3 cut(s)	207, 387, 525
MaeII	ACGT	2 cut(s)	81, 162
MaeIII	GTNAC	2 cut(s)	710, 928
MalI	GATC	3 cut(s)	353, 1048, 1078
MboI	GATC	3 cut(s)	351, 1046, 1076
MboII	GAAGA	3 cut(s)	47, 507, 785
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	43, 372, 482, 501
MnlI	CCTC	7 cut(s)	156, 164, 239, 255, 448, 604, 643
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	3 cut(s)	636, 945, 984
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	1094
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	3 cut(s)	158, 177, 972
MwoI	GCNNNNNNNGC	5 cut(s)	98, 164, 667, 1079, 1088
NdeI	CATATG	1 cut(s)	750
NdeII	GATC	3 cut(s)	351, 1046, 1076
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	6 cut(s)	25, 551, 623, 644, 718, 937
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	2 cut(s)	710, 928
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	644
PciI	ACATGT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	848, 949
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	126
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	100, 169, 1093, 1096
PscI	ACATGT	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	5 cut(s)	140, 308, 586, 696, 1007
RsaNI	GTAC	5 cut(s)	139, 307, 585, 695, 1006
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	636, 945, 984
SatI	GCNGC	4 cut(s)	99, 168, 1092, 1095
Sau3AI	GATC	3 cut(s)	351, 1046, 1076
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	4 cut(s)	344, 451, 466, 945
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	4 cut(s)	43, 372, 482, 501
SsiI	CCGC	4 cut(s)	5, 142, 158, 175
SspMI	CTAG	3 cut(s)	207, 387, 525
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	2 cut(s)	84, 165
TaqI	TCGA	6 cut(s)	30, 132, 186, 354, 595, 1075
TasI	AATT	4 cut(s)	43, 372, 482, 501
TatI	WGTACW	2 cut(s)	584, 1005
TfiI	GAWTC	2 cut(s)	848, 949
Tru1I	TTAA	3 cut(s)	636, 945, 984
Tru9I	TTAA	3 cut(s)	636, 945, 984
TscAI	CASTG	1 cut(s)	1056
TseFI	GTSAC	2 cut(s)	710, 928
TseI	GCWGC	4 cut(s)	98, 167, 1091, 1094
Tsp45I	GTSAC	2 cut(s)	710, 928
TspDTI	ATGAA	3 cut(s)	36, 608, 899
TspRI	CASTG	1 cut(s)	1056
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	3 cut(s)	207, 387, 525
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.