Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0020451

Physical Location & Seq

Genomic Coordinates Forward (+)

32200007 .. 32200787

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGGAGTGTTGGTGAAAGAGGAGGAGGTTGTGACATGCACCGTGGGCTCATCGTCTTCGTCGTCCTCAAGCTTCTCGCCGCAGCCAATAGAGGGGCTGCACGAGGTGGGTCCACCGCCGTTTCTCACGAAGACGTTTGAAATGGTGGAGGATCCTTCCACGGACGCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTTGTGTGGGACTTTCACAAGTTCTCCGTCACTCTTCTTCCTCGATACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGTCAGCTCAATACATATGAAATTTCAAGGCTTGCTCATCAACTGAATGCATGCAGGGTTATAGAAAGATCGATCCGGACCGATGGGAATTCCAGGCTTCCAAGACGTCGGCGCCGCGGAAGGCAAAAAAAAAAAAGTTATTGGACCCGTGGACCCGTCCCGAACCGGCCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

153

Amino Acids

17.44

Weight (kDa)

10.22

Isoelectric Point (pI)

70.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020451)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g32890
rosa_multiflora	Rmu_sc0000999.1_g000036 Rmu_sc0001551.1_g000035 Rmu_sc0006458.1_g000003 Rmu_sc0006763.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	393
AccII	CGCG	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	4 cut(s)	83, 119, 397, 399
AclWI	GGATC	3 cut(s)	149, 162, 349
AcsI	RAATTY	2 cut(s)	303, 370
AcyI	GRCGYC	3 cut(s)	168, 388, 394
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	143, 256, 309
AjnI	CCWGG	2 cut(s)	179, 374
AluBI	AGCT	5 cut(s)	75, 191, 201, 276, 289
AluI	AGCT	5 cut(s)	75, 191, 201, 276, 289
AlwI	GGATC	3 cut(s)	149, 162, 349
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	85, 100
ApoI	RAATTY	2 cut(s)	303, 370
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	4 cut(s)	113, 360, 426, 434
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	51, 140
BbvI	GCAGC	2 cut(s)	87, 97
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	2 cut(s)	181, 376
BfoI	RGCGCY	1 cut(s)	397
BisI	GCNGC	4 cut(s)	83, 86, 101, 397
BlsI	GCNGC	4 cut(s)	84, 87, 102, 398
Bme1390I	CCNGG	2 cut(s)	181, 376
Bme18I	GGWCC	4 cut(s)	113, 360, 426, 434
BmgT120I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
BmiI	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
BmrFI	CCNGG	2 cut(s)	181, 376
BpiI	GAAGAC	2 cut(s)	51, 140
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	2 cut(s)	202, 256
BpuEI	CTTGAG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	353
BsaHI	GRCGYC	3 cut(s)	168, 388, 394
BsaJI	CCNNGG	4 cut(s)	45, 162, 397, 430
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	181, 376
BseCI	ATCGAT	1 cut(s)	353
BseDI	CCNNGG	4 cut(s)	45, 162, 397, 430
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	2 cut(s)	87, 97
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	358, 448
BslFI	GGGAC	2 cut(s)	227, 425
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	227, 425
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	154, 350, 354
BspACI	CCGC	4 cut(s)	83, 119, 397, 399
BspANI	GGCC	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	353
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
BspPI	GGATC	3 cut(s)	149, 162, 349
BspT107I	GGYRCC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	4 cut(s)	45, 162, 397, 430
BssMI	GATC	3 cut(s)	154, 350, 354
BssNI	GRCGYC	3 cut(s)	168, 388, 394
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	181, 376
Bst4CI	ACNGT	2 cut(s)	46, 263
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	3 cut(s)	168, 388, 394
BstC8I	GCNNGC	3 cut(s)	193, 315, 334
BstDSI	CCRYGG	4 cut(s)	45, 162, 397, 430
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	3 cut(s)	157, 353, 357
BstMBI	GATC	3 cut(s)	154, 350, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 192
BstNI	CCWGG	2 cut(s)	181, 376
BstNSI	RCATGY	2 cut(s)	42, 336
BstSCI	CCNGG	2 cut(s)	179, 374
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	87, 97
BstV2I	GAAGAC	2 cut(s)	51, 140
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	353
BtgI	CCRYGG	4 cut(s)	45, 162, 397, 430
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	193, 315, 334
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
Cfr42I	CCGCGG	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	353
CpoI	CGGWCCG	1 cut(s)	360
CseI	GACGC	1 cut(s)	176
CspI	CGGWCCG	1 cut(s)	360
CviAII	CATG	2 cut(s)	39, 333
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	3 cut(s)	156, 352, 356
DpnII	GATC	3 cut(s)	154, 350, 354
DraIII	CACNNNGTG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	4 cut(s)	113, 360, 426, 434
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	179, 374
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
FaeI	CATG	2 cut(s)	42, 336
FaiI	YATR	5 cut(s)	40, 298, 300, 334, 344
FaqI	GGGAC	2 cut(s)	227, 425
FatI	CATG	2 cut(s)	38, 332
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	83, 86, 101, 397
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	83, 86, 101, 397
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	4 cut(s)	83, 86, 101, 397
GsuI	CTGGAG	2 cut(s)	202, 256
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	358, 448
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	3 cut(s)	168, 388, 394
Hin1II	CATG	2 cut(s)	42, 336
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	73
HpaII	CCGG	2 cut(s)	358, 448
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	116, 434
Hpy188III	TCNNGA	3 cut(s)	130, 358, 442
Hpy8I	GTNNAC	2 cut(s)	116, 434
Hpy99I	CGWCG	2 cut(s)	67, 393
HpyAV	CCTTC	2 cut(s)	168, 396
HpyCH4III	ACNGT	2 cut(s)	46, 263
HpyCH4IV	ACGT	2 cut(s)	137, 388
HpyCH4V	TGCA	4 cut(s)	42, 103, 332, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 192
HpySE526I	ACGT	2 cut(s)	137, 388
Hsp92I	GRCGYC	3 cut(s)	168, 388, 394
Hsp92II	CATG	2 cut(s)	42, 336
HspAI	GCGC	1 cut(s)	394
KasI	GGCGCC	1 cut(s)	393
Kpn2I	TCCGGA	1 cut(s)	357
KspI	CCGCGG	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	154, 350, 354
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	7 cut(s)	166, 193, 286, 322, 361, 371, 388
Lsp1109I	GCAGC	2 cut(s)	87, 97
MaeII	ACGT	2 cut(s)	137, 388
MaeIII	GTNAC	3 cut(s)	34, 232, 263
MalI	GATC	3 cut(s)	156, 352, 356
MboI	GATC	3 cut(s)	154, 350, 354
MboII	GAAGA	4 cut(s)	51, 145, 230, 233
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	303, 370
Mly113I	GGCGCC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	16, 19, 22, 79, 88, 100, 145, 255
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	2 cut(s)	358, 448
MspR9I	CCNGG	2 cut(s)	181, 376
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	181, 376
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	48, 192
NarI	GGCGCC	1 cut(s)	394
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	154, 350, 354
NlaIII	CATG	2 cut(s)	42, 336
NlaIV	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
NmuCI	GTSAC	2 cut(s)	34, 232
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	42, 336
PaeI	GCATGC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	84, 87, 102, 398
PluTI	GGCGCC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	179, 374
PspGI	CCWGG	2 cut(s)	179, 374
PspN4I	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
PspPI	GGNCC	5 cut(s)	113, 360, 426, 434, 450
PsuI	RGATCY	1 cut(s)	154
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SacII	CCGCGG	1 cut(s)	400
SatI	GCNGC	4 cut(s)	83, 86, 101, 397
Sau3AI	GATC	3 cut(s)	154, 350, 354
Sau96I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
ScrFI	CCNGG	2 cut(s)	181, 376
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	33, 77, 111, 140, 193, 203, 278, 291, 391
SfoI	GGCGCC	1 cut(s)	395
Sfr303I	CCGCGG	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	400
SinI	GGWCC	4 cut(s)	113, 360, 426, 434
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	303, 370
SsiI	CCGC	4 cut(s)	83, 119, 397, 399
SspDI	GGCGCC	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	179, 374
TaaI	ACNGT	2 cut(s)	46, 263
TaiI	ACGT	2 cut(s)	140, 391
TaqI	TCGA	2 cut(s)	247, 353
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	303, 370
TauI	GCSGC	2 cut(s)	85, 399
TseFI	GTSAC	2 cut(s)	34, 232
TseI	GCWGC	2 cut(s)	85, 100
Tsp45I	GTSAC	2 cut(s)	34, 232
TspDTI	ATGAA	2 cut(s)	268, 315
TspGWI	ACGGA	2 cut(s)	179, 220
VpaK11BI	GGWCC	4 cut(s)	113, 360, 426, 434
XapI	RAATTY	2 cut(s)	303, 370
XceI	RCATGY	2 cut(s)	42, 336
ZraI	GACGTC	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.