Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000999.1

Orthogroup ID

OG0020451

Physical Location & Seq

Genomic Coordinates Reverse (-)

114269 .. 114574

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000999.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggttaggagagcaagattgaacctttcagtactgagagtagcaattatgtgggagtgtcgcagccgcttcagtgtctgcaagagactccggtgccgccgtttttgtgtaaagacatttgatttggtggacgacccgtcgctggatttgatcatatcgtggggttctactagaagaagcttcgtggtttgggatcctgtggagtttgcgaggcttgtctcagacaggacccgcccagaatttcaccctgaaatccgaagtggccctgcggggcccaccttagaagaaattttaccaaaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

101

Amino Acids

11.86

Weight (kDa)

10.26

Isoelectric Point (pI)

72.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020451)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g32890
rosa_multiflora	Rmu_sc0000999.1_g000036 Rmu_sc0001551.1_g000035 Rmu_sc0006458.1_g000003 Rmu_sc0006763.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	4 cut(s)	67, 97, 232, 269
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	3 cut(s)	239, 288, 300
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	79, 223
AlwI	GGATC	2 cut(s)	188, 201
AlwNI	CAGNNNCTG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	262, 272
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	3 cut(s)	239, 288, 300
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspS9I	GGNCC	4 cut(s)	228, 263, 272, 273
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	79, 223
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	64, 67, 97
BlsI	GCNGC	3 cut(s)	65, 68, 98
BmcAI	AGTACT	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	4 cut(s)	228, 263, 272, 273
BmiI	GGNNCC	5 cut(s)	95, 195, 230, 273, 274
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	26, 234
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	264, 274
BshNI	GGYRCC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	79, 223
BsnI	GGCC	2 cut(s)	264, 274
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	150, 193
BspACI	CCGC	4 cut(s)	67, 97, 232, 269
BspANI	GGCC	2 cut(s)	264, 274
BspCNI	CTCAG	2 cut(s)	27, 233
BspLI	GGNNCC	5 cut(s)	95, 195, 230, 273, 274
BspPI	GGATC	2 cut(s)	188, 201
BspT107I	GGYRCC	1 cut(s)	93
BssMI	GATC	2 cut(s)	150, 193
BstDEI	CTNAG	3 cut(s)	35, 220, 280
BstKTI	GATC	2 cut(s)	153, 196
BstMAI	GTCTC	2 cut(s)	79, 223
BstMBI	GATC	2 cut(s)	150, 193
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	264, 274
BtsIMutI	CAGTG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	228, 263, 272, 273
Csp6I	GTAC	1 cut(s)	32
CviJI	RGCY	5 cut(s)	66, 180, 214, 264, 274
CviKI_1	RGCY	5 cut(s)	66, 180, 214, 264, 274
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	35, 220, 280
DpnI	GATC	2 cut(s)	152, 195
DpnII	GATC	2 cut(s)	150, 193
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	55
EcoO109I	RGGNCCY	2 cut(s)	228, 272
EcoT38I	GRGCYC	1 cut(s)	276
FaiI	YATR	2 cut(s)	50, 155
FauI	CCCGC	2 cut(s)	239, 262
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	64, 67, 97
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	64, 67, 97
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	3 cut(s)	64, 67, 97
HaeIII	GGCC	2 cut(s)	264, 274
HapII	CCGG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	223, 257
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	35, 220, 280
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 193
LpnPI	CCDG	7 cut(s)	104, 128, 210, 211, 249, 261, 279
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	171
MalI	GATC	2 cut(s)	152, 195
MboI	GATC	2 cut(s)	150, 193
MboII	GAAGA	2 cut(s)	186, 296
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	45, 239, 288, 300
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	204
MspI	CCGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	150, 193
NlaIV	GGNNCC	5 cut(s)	95, 195, 230, 273, 274
PkrI	GCNGC	3 cut(s)	65, 68, 98
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
PspN4I	GGNNCC	5 cut(s)	95, 195, 230, 273, 274
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	4 cut(s)	228, 263, 272, 273
PspPPI	RGGWCCY	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SatI	GCNGC	3 cut(s)	64, 67, 97
Sau3AI	GATC	2 cut(s)	150, 193
Sau96I	GGNCC	4 cut(s)	228, 263, 272, 273
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	3 cut(s)	27, 182, 281
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	4 cut(s)	45, 239, 288, 300
SsiI	CCGC	4 cut(s)	67, 97, 232, 269
SspMI	CTAG	1 cut(s)	171
TasI	AATT	4 cut(s)	45, 239, 288, 300
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	2 cut(s)	69, 99
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	63
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	3 cut(s)	239, 288, 300
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.