Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006763.1

Orthogroup ID

OG0020451

Physical Location & Seq

Genomic Coordinates Reverse (-)

97530 .. 97814

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006763.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggtgaggagagcaagattgaacctttcagtggtgggagtagcgattatgtgggagtgccgcagccgcttcagtgtctgcatgagactccggtgccgccgtttttgtgcaaagacatttgatttggtggacgacccgtcgttggatttgatcatatcgtggggttctactggaagaagcttcgtggtttgggaccctgtggagtttgcgaggcttgtcttgccccggaatttcaagcacaacaatttgcaaagagagaaggaggagaaattcgatgagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

94

Amino Acids

11.18

Weight (kDa)

9.49

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020451)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g32890
rosa_multiflora	Rmu_sc0000999.1_g000036 Rmu_sc0001551.1_g000035 Rmu_sc0006458.1_g000003 Rmu_sc0006763.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	3 cut(s)	61, 67, 97
AcsI	RAATTY	2 cut(s)	229, 269
AcuI	CTGAAG	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	31, 142
AgsI	TTSAA	2 cut(s)	22, 235
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	229, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	4 cut(s)	61, 64, 67, 97
BlsI	GCNGC	4 cut(s)	62, 65, 68, 98
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	193
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	95, 194, 195
BmrFI	CCNGG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 142
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	31, 142
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	22, 278
BseXI	GCAGC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	91, 226
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	31, 142
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	61, 67, 97
BspLI	GGNNCC	3 cut(s)	95, 194, 195
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 220
BstSCI	CCNGG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	36, 79
CaiI	CAGNNNCTG	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	3 cut(s)	66, 180, 214
CviKI_1	RGCY	3 cut(s)	66, 180, 214
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	193
FaeI	CATG	1 cut(s)	85
FaiI	YATR	3 cut(s)	50, 83, 155
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	61, 64, 67, 97
Fsp4HI	GCNGC	4 cut(s)	61, 64, 67, 97
GluI	GCNGC	4 cut(s)	61, 64, 67, 97
HapII	CCGG	2 cut(s)	91, 226
Hin1II	CATG	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	91, 226
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	81, 110, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 220
Hsp92II	CATG	1 cut(s)	85
KflI	GGGWCCC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	4 cut(s)	104, 156, 210, 239
Lsp1109I	GCAGC	1 cut(s)	75
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	186
MluCI	AATT	3 cut(s)	229, 244, 269
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	2 cut(s)	204, 256
MspI	CCGG	2 cut(s)	91, 226
MspR9I	CCNGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	66, 220
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	95, 194, 195
PkrI	GCNGC	4 cut(s)	62, 65, 68, 98
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	95, 194, 195
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	78
SatI	GCNGC	4 cut(s)	61, 64, 67, 97
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	2 cut(s)	27, 182
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	229, 244, 269
SsiI	CCGC	3 cut(s)	61, 67, 97
StyD4I	CCNGG	1 cut(s)	224
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	229, 244, 269
TauI	GCSGC	3 cut(s)	63, 69, 99
TscAI	CASTG	2 cut(s)	36, 79
TseI	GCWGC	1 cut(s)	63
TspRI	CASTG	2 cut(s)	36, 79
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	229, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.