Rroxscaffold_5G00347450

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
18827769 .. 18833790
6022 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00347450.1

Sequence Viewer

Length: 159 bp
ATGGTGAGGAGAGCAAGATTGAACCTTTCAAAGGTGGGAGTAGCGATTATGTGGGAGTGCCACAGCCGCTTCGTTGTCCGCAGAAGACTCGCGGGAGATGAATCTTTGAGGAGAGCATGTAGGCTCACCGGGGTTGGAGATATGGTTGGCAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.93

Weight (kDa)

11.64

Isoelectric Point (pI)

76.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020451)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 67, 79, 92
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 22, 30
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 16, 118
BbsI GAAGAC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcnI CCSGG 1 cut(s) 130
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 4 cut(s) 103, 129, 133, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 22, 124
Bsh1236I CGCG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 31
BspACI CCGC 3 cut(s) 67, 79, 92
BspFNI CGCG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 91
CviAII CATG 1 cut(s) 117
CviJI RGCY 2 cut(s) 66, 124
CviKI_1 RGCY 2 cut(s) 66, 124
EcoNI CCTNNNNNAGG 1 cut(s) 29
FaeI CATG 1 cut(s) 120
FaiI YATR 4 cut(s) 50, 118, 143, 157
FatI CATG 1 cut(s) 116
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 120
HinfI GANTC 2 cut(s) 87, 101
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 16, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 120
LpnPI CCDG 1 cut(s) 142
MboII GAAGA 1 cut(s) 96
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 1 cut(s) 102
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 130
NlaIII CATG 1 cut(s) 120
NspI RCATGY 1 cut(s) 120
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
SatI GCNGC 1 cut(s) 67
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 130
SetI ASST 2 cut(s) 27, 36
SgeI CNNG 7 cut(s) 27, 101, 103, 105, 129, 141, 142
Sse9I AATT 1 cut(s) 152
SsiI CCGC 3 cut(s) 67, 79, 92
StyD4I CCNGG 1 cut(s) 128
TasI AATT 1 cut(s) 152
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.