Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006458.1

Orthogroup ID

OG0020451

Physical Location & Seq

Genomic Coordinates Forward (+)

7133 .. 8736

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006458.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgagtaaaatcaagggatcggagatcggggagggacttacaagagaagacgagagctgcggcggtgatgacgaggatggagacgagagaggggaagaagaagagccgcttcagtgtctgcaagggattcccatgccattgtgtctgtctaagacgtttgatttggtgaacgacacgtcgctggatttgatcatatcgtggggttctactggaagaagctttgtggtttgggaccctgtggagtttgcgaggcttgtcttgcctcggaatttcaagcacaaaaatttatctacctttgtctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

4.37

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020451)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g32890
rosa_multiflora	Rmu_sc0000999.1_g000036 Rmu_sc0001551.1_g000035 Rmu_sc0006458.1_g000003 Rmu_sc0006763.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 63, 107
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	268, 283
AcuI	CTGAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	177
AluBI	AGCT	2 cut(s)	57, 219
AluI	AGCT	2 cut(s)	57, 219
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	2 cut(s)	268, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	77, 178
AvaII	GGWCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	304
BisI	GCNGC	3 cut(s)	58, 61, 107
BlsI	GCNGC	3 cut(s)	59, 62, 108
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	233, 234
BpiI	GAAGAC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	48, 245
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	48, 245
Bsp143I	GATC	3 cut(s)	17, 24, 189
BspACI	CCGC	3 cut(s)	60, 63, 107
BspLI	GGNNCC	2 cut(s)	233, 234
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	3 cut(s)	17, 24, 189
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	20, 27, 192
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	17, 24, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	4 cut(s)	57, 106, 219, 253
CviKI_1	RGCY	4 cut(s)	57, 106, 219, 253
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	19, 26, 191
DpnII	GATC	3 cut(s)	17, 24, 189
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	134, 194
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	2 cut(s)	48, 245
FatI	CATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	58, 61, 107
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	58, 61, 107
FspBI	CTAG	1 cut(s)	304
GluI	GCNGC	3 cut(s)	58, 61, 107
Hin1II	CATG	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	2 cut(s)	77, 178
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	22, 267
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	155, 176
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	155, 176
Hsp92II	CATG	1 cut(s)	136
KflI	GGGWCCC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	17, 24, 189
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	3 cut(s)	167, 195, 249
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	304
MaeII	ACGT	2 cut(s)	155, 176
MalI	GATC	3 cut(s)	19, 26, 191
MboI	GATC	3 cut(s)	17, 24, 189
MboII	GAAGA	5 cut(s)	59, 107, 110, 113, 225
MluCI	AATT	2 cut(s)	268, 283
MnlI	CCTC	5 cut(s)	25, 67, 83, 243, 273
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeII	GATC	3 cut(s)	17, 24, 189
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	233, 234
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	59, 62, 108
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	96
SatI	GCNGC	3 cut(s)	58, 61, 107
Sau3AI	GATC	3 cut(s)	17, 24, 189
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	5 cut(s)	59, 158, 179, 221, 296
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	268, 283
SsiI	CCGC	3 cut(s)	60, 63, 107
SspMI	CTAG	1 cut(s)	304
TaiI	ACGT	2 cut(s)	158, 179
TasI	AATT	2 cut(s)	268, 283
TauI	GCSGC	2 cut(s)	63, 109
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	57
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	268, 283
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.