Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0020451

Physical Location & Seq

Genomic Coordinates Forward (+)

32200007 .. 32200787

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGGAGTGTTGGTGAAAGAGGAGGAGGTTGTGACATGCACCGTGGGCTCATCGTCTTCGTCGTCCTCAAGCTTCTCGCCGCAGCCAATAGAGGGGCTGCACGAGGTGGGTCCACCGCCGTTTCTCACGAAGACGTTTGAAATGGTGGAGGATCCTTCCACGGACGCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTTGTGTGGGACTTTCACAAGTTCTCCGTCACTCTTCTTCCTCGATACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGTCAGCTCAATACATATGAAATTTCAAGGCTTGCTCATCAACTGAATGCATGCAGGGTTATAGAAAGATCGATCCGGACCGATGGGAATTCCAGGCTTCCAAGACGTCGGCGCCGCGGAAGGCAAAAAAAAAAAAGTTATTGGACCCGTGGACCCGTCCCGAACCGGCCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

153

Amino Acids

17.44

Weight (kDa)

10.22

Isoelectric Point (pI)

70.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	42 - 110	4.5e-22	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020451)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g32890
rosa_multiflora	Rmu_sc0000999.1_g000036 Rmu_sc0001551.1_g000035 Rmu_sc0006458.1_g000003 Rmu_sc0006763.1_g000018
rosa_roxburghii	Rroxscaffold_5G00347450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	393
AccII	CGCG	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	4 cut(s)	83, 119, 397, 399
AclWI	GGATC	3 cut(s)	149, 162, 349
AcsI	RAATTY	2 cut(s)	303, 370
AcyI	GRCGYC	3 cut(s)	168, 388, 394
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	143, 256, 309
AjnI	CCWGG	2 cut(s)	179, 374
AluBI	AGCT	5 cut(s)	75, 191, 201, 276, 289
AluI	AGCT	5 cut(s)	75, 191, 201, 276, 289
AlwI	GGATC	3 cut(s)	149, 162, 349
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	85, 100
ApoI	RAATTY	2 cut(s)	303, 370
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	4 cut(s)	113, 360, 426, 434
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	51, 140
BbvI	GCAGC	2 cut(s)	87, 97
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	2 cut(s)	181, 376
BfoI	RGCGCY	1 cut(s)	397
BisI	GCNGC	4 cut(s)	83, 86, 101, 397
BlsI	GCNGC	4 cut(s)	84, 87, 102, 398
Bme1390I	CCNGG	2 cut(s)	181, 376
Bme18I	GGWCC	4 cut(s)	113, 360, 426, 434
BmgT120I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
BmiI	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
BmrFI	CCNGG	2 cut(s)	181, 376
BpiI	GAAGAC	2 cut(s)	51, 140
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	2 cut(s)	202, 256
BpuEI	CTTGAG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	353
BsaHI	GRCGYC	3 cut(s)	168, 388, 394
BsaJI	CCNNGG	4 cut(s)	45, 162, 397, 430
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	181, 376
BseCI	ATCGAT	1 cut(s)	353
BseDI	CCNNGG	4 cut(s)	45, 162, 397, 430
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	2 cut(s)	87, 97
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	358, 448
BslFI	GGGAC	2 cut(s)	227, 425
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	227, 425
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	154, 350, 354
BspACI	CCGC	4 cut(s)	83, 119, 397, 399
BspANI	GGCC	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	353
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
BspPI	GGATC	3 cut(s)	149, 162, 349
BspT107I	GGYRCC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	4 cut(s)	45, 162, 397, 430
BssMI	GATC	3 cut(s)	154, 350, 354
BssNI	GRCGYC	3 cut(s)	168, 388, 394
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	181, 376
Bst4CI	ACNGT	2 cut(s)	46, 263
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	3 cut(s)	168, 388, 394
BstC8I	GCNNGC	3 cut(s)	193, 315, 334
BstDSI	CCRYGG	4 cut(s)	45, 162, 397, 430
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	3 cut(s)	157, 353, 357
BstMBI	GATC	3 cut(s)	154, 350, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 192
BstNI	CCWGG	2 cut(s)	181, 376
BstNSI	RCATGY	2 cut(s)	42, 336
BstSCI	CCNGG	2 cut(s)	179, 374
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	87, 97
BstV2I	GAAGAC	2 cut(s)	51, 140
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	353
BtgI	CCRYGG	4 cut(s)	45, 162, 397, 430
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	193, 315, 334
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
Cfr42I	CCGCGG	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	353
CpoI	CGGWCCG	1 cut(s)	360
CseI	GACGC	1 cut(s)	176
CspI	CGGWCCG	1 cut(s)	360
CviAII	CATG	2 cut(s)	39, 333
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	3 cut(s)	156, 352, 356
DpnII	GATC	3 cut(s)	154, 350, 354
DraIII	CACNNNGTG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	4 cut(s)	113, 360, 426, 434
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	179, 374
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
FaeI	CATG	2 cut(s)	42, 336
FaiI	YATR	5 cut(s)	40, 298, 300, 334, 344
FaqI	GGGAC	2 cut(s)	227, 425
FatI	CATG	2 cut(s)	38, 332
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	83, 86, 101, 397
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	83, 86, 101, 397
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	4 cut(s)	83, 86, 101, 397
GsuI	CTGGAG	2 cut(s)	202, 256
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	358, 448
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	3 cut(s)	168, 388, 394
Hin1II	CATG	2 cut(s)	42, 336
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	73
HpaII	CCGG	2 cut(s)	358, 448
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	116, 434
Hpy188III	TCNNGA	3 cut(s)	130, 358, 442
Hpy8I	GTNNAC	2 cut(s)	116, 434
Hpy99I	CGWCG	2 cut(s)	67, 393
HpyAV	CCTTC	2 cut(s)	168, 396
HpyCH4III	ACNGT	2 cut(s)	46, 263
HpyCH4IV	ACGT	2 cut(s)	137, 388
HpyCH4V	TGCA	4 cut(s)	42, 103, 332, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 192
HpySE526I	ACGT	2 cut(s)	137, 388
Hsp92I	GRCGYC	3 cut(s)	168, 388, 394
Hsp92II	CATG	2 cut(s)	42, 336
HspAI	GCGC	1 cut(s)	394
KasI	GGCGCC	1 cut(s)	393
Kpn2I	TCCGGA	1 cut(s)	357
KspI	CCGCGG	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	154, 350, 354
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	7 cut(s)	166, 193, 286, 322, 361, 371, 388
Lsp1109I	GCAGC	2 cut(s)	87, 97
MaeII	ACGT	2 cut(s)	137, 388
MaeIII	GTNAC	3 cut(s)	34, 232, 263
MalI	GATC	3 cut(s)	156, 352, 356
MboI	GATC	3 cut(s)	154, 350, 354
MboII	GAAGA	4 cut(s)	51, 145, 230, 233
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	303, 370
Mly113I	GGCGCC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	16, 19, 22, 79, 88, 100, 145, 255
Mph1103I	ATGCAT	1 cut(s)	334
MroI	TCCGGA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	2 cut(s)	358, 448
MspR9I	CCNGG	2 cut(s)	181, 376
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	181, 376
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	48, 192
NarI	GGCGCC	1 cut(s)	394
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	154, 350, 354
NlaIII	CATG	2 cut(s)	42, 336
NlaIV	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
NmuCI	GTSAC	2 cut(s)	34, 232
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	42, 336
PaeI	GCATGC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	84, 87, 102, 398
PluTI	GGCGCC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	179, 374
PspGI	CCWGG	2 cut(s)	179, 374
PspN4I	GGNNCC	5 cut(s)	114, 156, 395, 428, 436
PspPI	GGNCC	5 cut(s)	113, 360, 426, 434, 450
PsuI	RGATCY	1 cut(s)	154
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SacII	CCGCGG	1 cut(s)	400
SatI	GCNGC	4 cut(s)	83, 86, 101, 397
Sau3AI	GATC	3 cut(s)	154, 350, 354
Sau96I	GGNCC	5 cut(s)	113, 360, 426, 434, 450
ScrFI	CCNGG	2 cut(s)	181, 376
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	33, 77, 111, 140, 193, 203, 278, 291, 391
SfoI	GGCGCC	1 cut(s)	395
Sfr303I	CCGCGG	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	400
SinI	GGWCC	4 cut(s)	113, 360, 426, 434
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	303, 370
SsiI	CCGC	4 cut(s)	83, 119, 397, 399
SspDI	GGCGCC	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	179, 374
TaaI	ACNGT	2 cut(s)	46, 263
TaiI	ACGT	2 cut(s)	140, 391
TaqI	TCGA	2 cut(s)	247, 353
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	303, 370
TauI	GCSGC	2 cut(s)	85, 399
TseFI	GTSAC	2 cut(s)	34, 232
TseI	GCWGC	2 cut(s)	85, 100
Tsp45I	GTSAC	2 cut(s)	34, 232
TspDTI	ATGAA	2 cut(s)	268, 315
TspGWI	ACGGA	2 cut(s)	179, 220
VpaK11BI	GGWCC	4 cut(s)	113, 360, 426, 434
XapI	RAATTY	2 cut(s)	303, 370
XceI	RCATGY	2 cut(s)	42, 336
ZraI	GACGTC	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.