Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013841

Physical Location & Seq

Genomic Coordinates Reverse (-)

32921171 .. 32924189

Gene Structure 3019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGTGTCCTTCCTCTCAACTGTCCCTTCATTTCTTCCACTTCCTCCTGCCACTCTCAACGCCCCGAAATATCCAATTCTTTCTGTTAAAATACATTGTAACAAAATTGAAGCTGATGCTGCTACTGAGAACAGATTTCATAGGAGGGACATTCTCAAATGCGTTGGCGCCACGATTGGCGTGGAAATGGTAAGAAGCTCAGGAACATTTGTTGAAGTAGCCGAGGCTGCTGATCTGATACAGCGCAGACAGCGTTCTGAATTTCTTTCAAGTATCAAGGACACCCTCTTTAAGGCTATAAAGGAAAATCGGGAACTTATCCCATCCTTACTAACTTTGGCACTGAATGATGCCGTCACTTATGATAAGGCTTCAAAATCGGGGGGCCCGAATGGTTCAATCAGATTCAGCTCAGAGATAAGCAGACCTGAAAACAAGGGGCTTGCTGCTGCTTTGAATTTAATAGAAGAAGCAAAGAAGGAAATCGATTCTAATTCGAAGGGTGGACCCATTTCGTATGCTGATCTGATCCAGTTAGCAGCACAAAGTGCTACTAAGCAAACTTTTCTCGCTGCTGCAATTCGCAAATGCGGAGGGAATGAAGAGAAGGGAAATTTATTATACACCGCATATGGTTCGAATGGTCAGTGGGGCTTGTTTGAGAGGAATTTTGGAAGAACAGATACGGAGGAGCCAGATCCAGAGGGAAGAGTTCCCCAGTGGGACAAAGCAAGTGTCCAGGAATCGAAAGACAAGTTCTCTGCCCTTGGCTTCGGCCCCCGCCAGCTAGCAGTTATGTCTGCATTCTTGGGTCCTGATCAAATAGCCACAGAAACCCTATTAGCCGCTGATCCAGAAGTTTTTCCGTGGGTTCAGAAATACCAACGCAGCCGCGAAACAGTATCAGAAACAGATTATGAGGTTGATCTGATAACTACTTTCACAAAACTGAGCACTTTGGGCCAACAAATCAATTATGAAGCCTATACATATCCAGTACAAAAGATTGATTTCAGCAAACTCAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

345

Amino Acids

37.9

Weight (kDa)

5.94

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	94 - 268	8.1e-20	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09010 AT4G09010 AT4G09010
fragaria_vesca	FvH4_5g36620
malus_domestica	MD15G1373900.v1.1
prunus_persica	Prupe.1G522500_v2.0.a1
pyrus_communis	pycom15g33500
rosa_chinensis	RchiOBHm_Chr7g0242391 RchiOBHm_Chr7g0242541
rosa_laevigata	RLG00000000895
rosa_roxburghii	Rroxscaffold_3G00222710
rosa_rugosa	Rorug07G0315200
rosa_samantha	Rh7AG470700 Rh7BG440600 Rh7CG487300 Rh7DG455800
rosa_wichuraiana	Rw0G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	897
AciI	CCGC	6 cut(s)	5, 594, 630, 784, 849, 895
AclWI	GGATC	3 cut(s)	526, 695, 848
AcsI	RAATTY	4 cut(s)	263, 460, 616, 670
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	1002
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	113, 218, 273, 378, 402, 460
AjnI	CCWGG	1 cut(s)	741
AluBI	AGCT	4 cut(s)	116, 201, 414, 790
AluI	AGCT	4 cut(s)	116, 201, 414, 790
Alw21I	GWGCWC	1 cut(s)	959
AlwI	GGATC	3 cut(s)	526, 695, 848
AoxI	GGCC	3 cut(s)	388, 778, 964
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	8 cut(s)	122, 230, 449, 452, 542, 575, 578, 891
ApoI	RAATTY	4 cut(s)	263, 460, 616, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	173, 249
AspS9I	GGNCC	6 cut(s)	388, 389, 509, 779, 815, 964
AsuII	TTCGAA	2 cut(s)	500, 641
AsuNHI	GCTAGC	1 cut(s)	790
AvaII	GGWCC	2 cut(s)	509, 815
BaeGI	GKGCMC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	8 cut(s)	109, 217, 436, 439, 554, 562, 565, 903
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	743
BclI	TGATCA	1 cut(s)	820
BfaI	CTAG	1 cut(s)	791
BfoI	RGCGCY	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	2 cut(s)	509, 815
BmgT120I	GGNCC	6 cut(s)	388, 389, 509, 779, 815, 964
BmiI	GGNNCC	7 cut(s)	172, 389, 390, 511, 696, 781, 816
BmrFI	CCNGG	1 cut(s)	743
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	109, 343
BmtI	GCTAGC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	202
Bpu14I	TTCGAA	2 cut(s)	500, 641
Bsa29I	ATCGAT	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	225, 769, 869
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	3 cut(s)	535, 721, 998
BseBI	CCWGG	1 cut(s)	743
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	3 cut(s)	225, 769, 869
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	4 cut(s)	120, 216, 429, 944
BseNI	ACTGG	3 cut(s)	535, 721, 998
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	8 cut(s)	109, 217, 436, 439, 554, 562, 565, 903
Bsh1236I	CGCG	1 cut(s)	897
BshFI	GGCC	3 cut(s)	390, 780, 966
BshNI	GGYRCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	959
BslFI	GGGAC	3 cut(s)	11, 164, 740
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmFI	GGGAC	3 cut(s)	11, 164, 740
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	3 cut(s)	390, 780, 966
Bsp119I	TTCGAA	2 cut(s)	500, 641
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	392, 959
Bsp143I	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
BspACI	CCGC	6 cut(s)	5, 594, 630, 784, 849, 895
BspANI	GGCC	3 cut(s)	390, 780, 966
BspCNI	CTCAG	4 cut(s)	121, 215, 428, 945
BspDI	ATCGAT	1 cut(s)	489
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	7 cut(s)	172, 389, 390, 511, 696, 781, 816
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	526, 695, 848
BspT104I	TTCGAA	2 cut(s)	500, 641
BspT107I	GGYRCC	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	535, 721, 998
BssECI	CCNNGG	3 cut(s)	225, 769, 869
BssMI	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	25, 904
Bst6I	CTCTTC	2 cut(s)	600, 706
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBI	TTCGAA	2 cut(s)	500, 641
BstC8I	GCNNGC	3 cut(s)	447, 788, 792
BstDEI	CTNAG	5 cut(s)	129, 202, 415, 558, 953
BstDSI	CCRYGG	1 cut(s)	869
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	897
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	173, 249
BstKTI	GATC	7 cut(s)	238, 529, 534, 703, 823, 856, 931
BstMBI	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 230, 253, 551, 963
BstNI	CCWGG	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	8 cut(s)	109, 217, 436, 439, 554, 562, 565, 903
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	390, 780, 966
BsuTUI	ATCGAT	1 cut(s)	489
BtgI	CCRYGG	1 cut(s)	869
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	344, 656, 728
Cac8I	GCNNGC	3 cut(s)	447, 788, 792
CfoI	GCGC	2 cut(s)	173, 249
Cfr13I	GGNCC	6 cut(s)	388, 389, 509, 779, 815, 964
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	1001
CviQI	GTAC	1 cut(s)	1001
DdeI	CTNAG	5 cut(s)	129, 202, 415, 558, 953
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	7 cut(s)	237, 528, 533, 702, 822, 855, 930
DpnII	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	600, 706
EarI	CTCTTC	2 cut(s)	600, 706
Eco130I	CCWWGG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	509, 815
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoO109I	RGGNCCY	2 cut(s)	388, 815
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	769
EcoT38I	GRGCYC	1 cut(s)	392
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	769
FaqI	GGGAC	3 cut(s)	11, 164, 740
FauI	CCCGC	1 cut(s)	791
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	820
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	2 cut(s)	172, 248
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	390, 780, 966
HhaI	GCGC	2 cut(s)	173, 249
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	2 cut(s)	171, 247
HinP1I	GCGC	2 cut(s)	171, 247
HinfI	GANTC	3 cut(s)	408, 491, 746
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	8 cut(s)	240, 262, 407, 418, 531, 879, 910, 933
Hpy188III	TCNNGA	5 cut(s)	204, 314, 704, 818, 857
Hpy8I	GTNNAC	1 cut(s)	509
HpyAV	CCTTC	5 cut(s)	22, 39, 475, 496, 604
HpyCH4III	ACNGT	2 cut(s)	25, 904
HpyCH4V	TGCA	2 cut(s)	581, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 230, 253, 551, 963
HpyF3I	CTNAG	5 cut(s)	129, 202, 415, 558, 953
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	2 cut(s)	171, 247
KasI	GGCGCC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	8 cut(s)	109, 217, 436, 439, 554, 562, 565, 903
LweI	GCATC	2 cut(s)	109, 343
MaeI	CTAG	1 cut(s)	791
MaeIII	GTNAC	2 cut(s)	101, 358
MalI	GATC	7 cut(s)	237, 528, 533, 702, 822, 855, 930
MboI	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
MboII	GAAGA	5 cut(s)	29, 482, 617, 690, 723
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	2 cut(s)	392, 959
Mly113I	GGCGCC	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	3 cut(s)	90, 294, 464
MspA1I	CMGCKG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	743
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	743
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	5 cut(s)	122, 230, 253, 551, 963
NarI	GGCGCC	1 cut(s)	171
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
NheI	GCTAGC	1 cut(s)	790
NlaIV	GGNNCC	7 cut(s)	172, 389, 390, 511, 696, 781, 816
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	358
NspV	TTCGAA	2 cut(s)	500, 641
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PctI	GAATGC	1 cut(s)	806
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	3 cut(s)	408, 491, 746
PfoI	TCCNGGA	1 cut(s)	741
PluTI	GGCGCC	1 cut(s)	174
PpuMI	RGGWCCY	1 cut(s)	815
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	7 cut(s)	172, 389, 390, 511, 696, 781, 816
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	6 cut(s)	388, 389, 509, 779, 815, 964
PspPPI	RGGWCCY	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	1 cut(s)	1002
RsaNI	GTAC	1 cut(s)	1001
SaqAI	TTAA	3 cut(s)	90, 294, 464
Sau3AI	GATC	7 cut(s)	235, 526, 531, 700, 820, 853, 928
Sau96I	GGNCC	6 cut(s)	388, 389, 509, 779, 815, 964
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	2 cut(s)	392, 959
SetI	ASST	6 cut(s)	118, 203, 416, 433, 792, 927
SfaNI	GCATC	2 cut(s)	109, 343
SfoI	GGCGCC	1 cut(s)	172
SfuI	TTCGAA	2 cut(s)	500, 641
SinI	GGWCC	2 cut(s)	509, 815
SsiI	CCGC	6 cut(s)	5, 594, 630, 784, 849, 895
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	2 cut(s)	25, 904
TaqI	TCGA	4 cut(s)	489, 500, 641, 749
TatI	WGTACW	1 cut(s)	1000
TauI	GCSGC	2 cut(s)	851, 897
TfiI	GAWTC	3 cut(s)	408, 491, 746
Tru1I	TTAA	3 cut(s)	90, 294, 464
Tru9I	TTAA	3 cut(s)	90, 294, 464
TscAI	CASTG	3 cut(s)	351, 656, 728
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	8 cut(s)	122, 230, 449, 452, 542, 575, 578, 891
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	21, 131, 618, 996
TspGWI	ACGGA	2 cut(s)	704, 858
TspRI	CASTG	3 cut(s)	351, 656, 728
VpaK11BI	GGWCC	2 cut(s)	509, 815
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	4 cut(s)	263, 460, 616, 670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.