Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

37666097 .. 37667426

Gene Structure 1330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTGGAAGCGAGTGGTACAAGCACCTTCAGCTCAGCTCCGAACCCTAGCCTCACAGAGATCCTCATGTCTCAAACACAGCTTTCGACTCCTCATCTTATCACCATCTTCCTCTTCAGTGACGCTGTTTCAGCGATCTTCTCTTTCCTCCACCCACGCCACCTTTACTTCCTGGTCCAGTGCGTCTGCATTTATGGGTCATGAGCACGAGGAGTTTGAGGCTGAGCATCAGAGTAGGATCTATACATCCAAGCAAGGTGGAACTGATACTGGGTATTATTGTCAAAATAGTGGGCAGTTGCAACAGAAACTAAATGGGGCATGCACTGATGGTTCATGGGATCCCCAGCAGAGCTCAAATCAGTATAGTCAAAGTAACAATGGGCCTTTCTGGAGAAGCACAGGCAACGAATTTCTGAATGACCCAGTTCAACAAAATGGAAATTTTAGAGGGTATTACGGTCATGAAAATAGGGGGTTGCAAAAAACCCCAAACTTGCATGGGAAAGATTTAGGAAATGGAAATATACAGAATTCATATGTGCCTGGGAAGGAGCCATCCATAGAAGTCAGACAGAACCTCGATTGTTATAAATCACAAGGAAATCCGGGGTCTCAGGGAAACCTAAATCAGAATTTTATGCAAAGTTATGCACAGCATCAGCAAAATACCGATGGTTATTCTGAATTGCATCAGCCGAACCCTAGTTATGGACAACATCAACAGAATTCTAGTTATGGATATGAACAGTATCAGCAACAACCTAGTTATAGGCAATACCAGCAAAACCCTAGTCATAGGCAATACCAGCAAAACCCTAGTGATGGGCAATACCAGCACAGCCCCCATGCCAGACAATATCCGACAAATTCAGATGCTTTTAAAAATATGATAGTGGATTCTCACGCAGGAAGTGAGTCAAAATCTGAAGGACAATTGATTGAGGCTTCGGAAAATAGCCCATCTAGTTCCAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAGGCTGCGGATATCTTGGGACTGCTAGAGAAGCAGCATGTTCATGTGGATTTGCATCTCTATTTACAGTTAATACAGGCATGCGGTGAGGCTAAGGCTTTAGAAGAAGCAAAAGTTGTTCATGACAACATCAAGATTTCAAAGGATACCAAGATTTCAAAGGATCTCGACGAATTGCTGTTCATGACAAAAGTTGTTCTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

408

Amino Acids

45.83

Weight (kDa)

6.31

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AciI	CCGC	2 cut(s)	1025, 1101
AclWI	GGATC	6 cut(s)	54, 245, 335, 348, 996, 1188
AcsI	RAATTY	6 cut(s)	410, 442, 532, 634, 727, 868
AcuI	CTGAAG	3 cut(s)	12, 99, 948
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	710, 824
AgsI	TTSAA	4 cut(s)	431, 980, 1158, 1176
AjnI	CCWGG	2 cut(s)	170, 544
AluBI	AGCT	4 cut(s)	32, 37, 81, 354
AluI	AGCT	4 cut(s)	32, 37, 81, 354
Alw21I	GWGCWC	2 cut(s)	207, 356
Alw26I	GTCTC	2 cut(s)	74, 618
AlwI	GGATC	6 cut(s)	54, 245, 335, 348, 996, 1188
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	1022, 1051
ApoI	RAATTY	6 cut(s)	410, 442, 532, 634, 727, 868
ArsI	GACNNNNNNTTYG	2 cut(s)	778, 810
AspS9I	GGNCC	2 cut(s)	174, 383
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	93, 1115
AvaII	GGWCC	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	207, 356
BbvI	GCAGC	2 cut(s)	1009, 1063
BccI	CCATC	6 cut(s)	112, 323, 565, 668, 818, 970
BciT130I	CCWGG	2 cut(s)	172, 546
BciVI	GTATCC	1 cut(s)	1156
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	74, 618
BfaI	CTAG	8 cut(s)	47, 705, 732, 765, 792, 819, 966, 1043
BfuI	GTATCC	1 cut(s)	1156
BisI	GCNGC	2 cut(s)	1023, 1052
BlpI	GCTNAGC	2 cut(s)	33, 222
BlsI	GCNGC	2 cut(s)	1024, 1053
Bme1390I	CCNGG	3 cut(s)	172, 546, 609
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	174, 383
BmiI	GGNNCC	2 cut(s)	342, 555
BmrFI	CCNGG	3 cut(s)	172, 546, 609
BmrI	ACTGGG	2 cut(s)	279, 419
BmsI	GCATC	5 cut(s)	235, 667, 700, 865, 1081
BmuI	ACTGGG	2 cut(s)	279, 419
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	1110
Bpu1102I	GCTNAGC	2 cut(s)	33, 222
BpuMI	CCSGG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	545, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 824
Bse1I	ACTGG	4 cut(s)	177, 274, 425, 972
Bse8I	GATNNNNATC	1 cut(s)	1071
BseBI	CCWGG	2 cut(s)	172, 546
BseDI	CCNNGG	2 cut(s)	545, 608
BseGI	GGATG	2 cut(s)	245, 557
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	2 cut(s)	710, 824
BseMII	CTCAG	3 cut(s)	47, 213, 629
BseNI	ACTGG	4 cut(s)	177, 274, 425, 972
BseRI	GAGGAG	2 cut(s)	80, 224
BseXI	GCAGC	2 cut(s)	1009, 1063
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	207, 356
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	1050
BslI	CCNNNNNNNGG	2 cut(s)	710, 824
BsmAI	GTCTC	2 cut(s)	74, 618
BsmFI	GGGAC	1 cut(s)	1050
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	618
Bsp1286I	GDGCHC	2 cut(s)	207, 356
Bsp143I	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
Bsp1720I	GCTNAGC	2 cut(s)	33, 222
BspACI	CCGC	2 cut(s)	1025, 1101
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	3 cut(s)	46, 214, 628
BspHI	TCATGA	4 cut(s)	199, 463, 1138, 1200
BspLI	GGNNCC	2 cut(s)	342, 555
BspPI	GGATC	6 cut(s)	54, 245, 335, 348, 996, 1188
BspTNI	GGTCTC	1 cut(s)	618
BsrI	ACTGG	4 cut(s)	177, 274, 425, 972
BssECI	CCNNGG	2 cut(s)	545, 608
BssMI	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	172, 546
Bst4CI	ACNGT	3 cut(s)	461, 750, 1086
Bst6I	CTCTTC	2 cut(s)	118, 975
BstC8I	GCNNGC	2 cut(s)	322, 1099
BstDEI	CTNAG	4 cut(s)	33, 222, 615, 1110
BstF5I	GGATG	2 cut(s)	245, 557
BstKTI	GATC	6 cut(s)	62, 137, 240, 343, 991, 1183
BstMAI	GTCTC	2 cut(s)	74, 618
BstMBI	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 130, 781, 808, 835, 1048
BstNI	CCWGG	2 cut(s)	172, 546
BstNSI	RCATGY	3 cut(s)	324, 1058, 1101
BstSCI	CCNGG	3 cut(s)	170, 544, 607
BstV1I	GCAGC	2 cut(s)	1009, 1063
BstX2I	RGATCY	4 cut(s)	59, 237, 340, 1180
BstYI	RGATCY	4 cut(s)	59, 237, 340, 1180
BsuI	GTATCC	1 cut(s)	1156
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	245, 557
BtsIMutI	CAGTG	3 cut(s)	123, 184, 324
Cac8I	GCNNGC	2 cut(s)	322, 1099
CciI	TCATGA	4 cut(s)	199, 463, 1138, 1200
Cfr13I	GGNCC	2 cut(s)	174, 383
CseI	GACGC	2 cut(s)	130, 171
Csp6I	GTAC	1 cut(s)	17
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	4 cut(s)	33, 222, 615, 1110
DpnI	GATC	6 cut(s)	61, 136, 239, 342, 990, 1182
DpnII	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
DraI	TTTAAA	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	118, 975
EarI	CTCTTC	2 cut(s)	118, 975
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	618
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	3 cut(s)	12, 99, 948
EcoICRI	GAGCTC	1 cut(s)	354
EcoRI	GAATTC	2 cut(s)	532, 727
EcoRII	CCWGG	2 cut(s)	170, 544
EcoRV	GATATC	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	356
FalI	AAGNNNNNCTT	1 cut(s)	1200
FaqI	GGGAC	1 cut(s)	1050
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	1023, 1052
FokI	GGATG	2 cut(s)	232, 544
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	1023, 1052
FspBI	CTAG	8 cut(s)	47, 705, 732, 765, 792, 819, 966, 1043
GluI	GCNGC	2 cut(s)	1023, 1052
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	2 cut(s)	130, 171
HinfI	GANTC	3 cut(s)	87, 899, 917
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	93, 1115
Hpy188III	TCNNGA	8 cut(s)	200, 391, 464, 977, 1139, 1150, 1184, 1201
Hpy99I	CGWCG	1 cut(s)	1190
HpyAV	CCTTC	3 cut(s)	36, 544, 923
HpyCH4III	ACNGT	3 cut(s)	461, 750, 1086
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 130, 781, 808, 835, 1048
HpyF3I	CTNAG	4 cut(s)	33, 222, 615, 1110
Kzo9I	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
LmnI	GCTCC	2 cut(s)	42, 553
Lsp1109I	GCAGC	2 cut(s)	1009, 1063
LweI	GCATC	5 cut(s)	235, 667, 700, 865, 1081
MaeI	CTAG	8 cut(s)	47, 705, 732, 765, 792, 819, 966, 1043
MaeIII	GTNAC	2 cut(s)	118, 374
MalI	GATC	6 cut(s)	61, 136, 239, 342, 990, 1182
MboI	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
MboII	GAAGA	5 cut(s)	99, 105, 129, 992, 1133
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	4 cut(s)	59, 237, 340, 1180
MhlI	GDGCHC	2 cut(s)	207, 356
MluCI	AATT	9 cut(s)	410, 442, 532, 634, 686, 727, 868, 935, 1190
MlyI	GAGTC	2 cut(s)	81, 926
MmeI	TCCRAC	2 cut(s)	887, 966
MseI	TTAA	3 cut(s)	882, 1014, 1088
MslI	CAYNNNNRTG	1 cut(s)	1059
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	3 cut(s)	172, 546, 609
MunI	CAATTG	1 cut(s)	935
MvaI	CCWGG	2 cut(s)	172, 546
MwoI	GCNNNNNNNGC	6 cut(s)	29, 130, 781, 808, 835, 1048
NciI	CCSGG	1 cut(s)	609
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
NlaIV	GGNNCC	2 cut(s)	342, 555
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	3 cut(s)	324, 1058, 1101
PaeI	GCATGC	2 cut(s)	324, 1101
PagI	TCATGA	4 cut(s)	199, 463, 1138, 1200
PfeI	GAWTC	1 cut(s)	899
PkrI	GCNGC	2 cut(s)	1024, 1053
PleI	GAGTC	2 cut(s)	81, 925
PpsI	GAGTC	2 cut(s)	81, 925
PsiI	TTATAA	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	170, 544
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	170, 544
PspN4I	GGNNCC	2 cut(s)	342, 555
PspPI	GGNCC	2 cut(s)	174, 383
PsuI	RGATCY	4 cut(s)	59, 237, 340, 1180
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	882, 1014, 1088
SatI	GCNGC	2 cut(s)	1023, 1052
Sau3AI	GATC	6 cut(s)	59, 134, 237, 340, 988, 1180
Sau96I	GGNCC	2 cut(s)	174, 383
SchI	GAGTC	2 cut(s)	81, 926
ScrFI	CCNGG	3 cut(s)	172, 546, 609
SduI	GDGCHC	2 cut(s)	207, 356
SfaNI	GCATC	5 cut(s)	235, 667, 700, 865, 1081
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SphI	GCATGC	2 cut(s)	324, 1101
Sse9I	AATT	9 cut(s)	410, 442, 532, 634, 686, 727, 868, 935, 1190
SsiI	CCGC	2 cut(s)	1025, 1101
SspMI	CTAG	8 cut(s)	47, 705, 732, 765, 792, 819, 966, 1043
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	170, 544, 607
TaaI	ACNGT	3 cut(s)	461, 750, 1086
TaqI	TCGA	3 cut(s)	85, 582, 1185
TasI	AATT	9 cut(s)	410, 442, 532, 634, 686, 727, 868, 935, 1190
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	3 cut(s)	882, 1014, 1088
Tru9I	TTAA	3 cut(s)	882, 1014, 1088
TscAI	CASTG	3 cut(s)	123, 184, 331
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	1022, 1051
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	7 cut(s)	324, 480, 525, 759, 1049, 1127, 1189
TspRI	CASTG	3 cut(s)	123, 184, 331
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	6 cut(s)	410, 442, 532, 634, 727, 868
XceI	RCATGY	3 cut(s)	324, 1058, 1101
XspI	CTAG	8 cut(s)	47, 705, 732, 765, 792, 819, 966, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.