Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

37700292 .. 37701017

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTGCAACTCTTATGGCAATACCAGCAAAGCCCCCATGCTGGACAATATCCGACAAATTCAGATGCTTTTCAAAATATGATAGTGGATTCTCACGCAGGAAGTGAGTCAAAATCTGAAGGACAATTCATTGAGGCTTCGGAAAATAGCCCATCTAGTTCCAGTCTTGAAGAGTTGGATCGTTTTTGCAAGGAGGGGAAAGTTAAGGAAGCTGTGGATATCTTGGGACAGCTAGAGATGCAGCATGTTCATGTGGATTTGCATCTCTATTTACAGTTAATGCAGGCATGCGGTGAGGCTAAGGCTTTAGAAGAAGCAAAAGTTGTTCATGACAACATTACCAGATTATTGCCTACTTTGAATGTGAGTACGTACAACAAAATCTTGGAGATGTATTCTAAATGTGGTTCTATGGACAACGCATTTTTGGTTTTCAACAAGATGCCAAATCGGAATTTGACATCGTGGGACATTATGATAACATGGTTTGCTATGAATGGTCTTGGGGAAGATGCCATTGATCTATTTACCCAATTCAAGAAAGCAGGCTTGAAACCTGATGGCCAATTGTTCATTGGGGTTTTATACGCTTGTAGTGTCGTGGGAGATATTAATGAGGGATTGCTGCATTTTGAATCGATGAGCAATGATTATGCTATTGTCCCAAATATGGATCGATTATGTGAGTGTAATAGATATGTTAGGAAGTACGGGCCATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

4.96

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 153	1.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	186, 681
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	58, 454
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	370, 374, 710
AfiI	CCNNNNNNNGG	2 cut(s)	41, 670
AgsI	TTSAA	7 cut(s)	74, 170, 361, 436, 538, 553, 635
AluBI	AGCT	2 cut(s)	212, 232
AluI	AGCT	2 cut(s)	212, 232
AlwI	GGATC	2 cut(s)	186, 681
AoxI	GGCC	2 cut(s)	562, 713
ApeKI	GCWGC	2 cut(s)	241, 625
ApoI	RAATTY	2 cut(s)	58, 454
AseI	ATTAAT	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	253, 612
BccI	CCATC	3 cut(s)	160, 554, 724
BfaI	CTAG	2 cut(s)	156, 233
BisI	GCNGC	2 cut(s)	242, 626
BlsI	GCNGC	2 cut(s)	243, 627
BmgT120I	GGNCC	1 cut(s)	713
BmsI	GCATC	5 cut(s)	55, 228, 271, 432, 502
Bpu10I	CCTNAGC	1 cut(s)	300
Bsa29I	ATCGAT	2 cut(s)	638, 676
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 670
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	652
Bse8I	GATNNNNATC	1 cut(s)	261
BseCI	ATCGAT	2 cut(s)	638, 676
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	41, 670
BseMI	GCAATG	1 cut(s)	652
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	253, 612
BshFI	GGCC	2 cut(s)	564, 715
BshVI	ATCGAT	2 cut(s)	638, 676
BslFI	GGGAC	3 cut(s)	240, 482, 647
BslI	CCNNNNNNNGG	2 cut(s)	41, 670
BsmFI	GGGAC	3 cut(s)	240, 482, 647
BsnI	GGCC	2 cut(s)	564, 715
Bsp143I	GATC	3 cut(s)	178, 520, 673
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	564, 715
BspDI	ATCGAT	2 cut(s)	638, 676
BspHI	TCATGA	1 cut(s)	328
BspPI	GGATC	2 cut(s)	186, 681
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	178, 520, 673
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	285, 289, 547
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	181, 523, 676
BstMBI	GATC	3 cut(s)	178, 520, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 238
BstNSI	RCATGY	2 cut(s)	248, 291
BstSNI	TACGTA	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	253, 612
Bsu15I	ATCGAT	2 cut(s)	638, 676
BsuRI	GGCC	2 cut(s)	564, 715
BsuTUI	ATCGAT	2 cut(s)	638, 676
Cac8I	GCNNGC	3 cut(s)	285, 289, 547
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	2 cut(s)	638, 676
Csp6I	GTAC	3 cut(s)	369, 373, 709
CviAII	CATG	6 cut(s)	38, 245, 251, 288, 329, 483
CviQI	GTAC	3 cut(s)	369, 373, 709
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	180, 522, 675
DpnII	GATC	3 cut(s)	178, 520, 673
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
FaqI	GGGAC	3 cut(s)	240, 482, 647
FatI	CATG	6 cut(s)	37, 244, 250, 287, 328, 482
Fnu4HI	GCNGC	2 cut(s)	242, 626
Fsp4HI	GCNGC	2 cut(s)	242, 626
FspBI	CTAG	2 cut(s)	156, 233
GluI	GCNGC	2 cut(s)	242, 626
HaeIII	GGCC	2 cut(s)	564, 715
Hin1II	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
HinfI	GANTC	3 cut(s)	89, 107, 635
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	5 cut(s)	54, 64, 118, 142, 453
Hpy188III	TCNNGA	4 cut(s)	167, 329, 538, 720
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	6 cut(s)	7, 189, 241, 262, 283, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 238
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
Kzo9I	GATC	3 cut(s)	178, 520, 673
LpnPI	CCDG	9 cut(s)	27, 38, 84, 175, 269, 355, 531, 570, 705
Lsp1109I	GCAGC	2 cut(s)	253, 612
LweI	GCATC	5 cut(s)	55, 228, 271, 432, 502
MaeI	CTAG	2 cut(s)	156, 233
MaeII	ACGT	1 cut(s)	371
MalI	GATC	3 cut(s)	180, 522, 675
MboI	GATC	3 cut(s)	178, 520, 673
MboII	GAAGA	3 cut(s)	182, 323, 521
MfeI	CAATTG	1 cut(s)	566
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	5 cut(s)	58, 125, 454, 533, 566
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	77, 156
MnlI	CCTC	4 cut(s)	127, 187, 289, 610
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	3 cut(s)	204, 278, 612
MslI	CAYNNNNRTG	2 cut(s)	249, 721
Msp20I	TGGCCA	1 cut(s)	564
MunI	CAATTG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	25, 238
NdeII	GATC	3 cut(s)	178, 520, 673
NlaIII	CATG	6 cut(s)	41, 248, 254, 291, 332, 486
NspI	RCATGY	2 cut(s)	248, 291
PaeI	GCATGC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	89, 635
PkrI	GCNGC	2 cut(s)	243, 627
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	713
RsaI	GTAC	3 cut(s)	370, 374, 710
RsaNI	GTAC	3 cut(s)	369, 373, 709
RseI	CAYNNNNRTG	2 cut(s)	249, 721
SaqAI	TTAA	3 cut(s)	204, 278, 612
SatI	GCNGC	2 cut(s)	242, 626
Sau3AI	GATC	3 cut(s)	178, 520, 673
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	1 cut(s)	116
SetI	ASST	4 cut(s)	214, 234, 374, 559
SfaNI	GCATC	5 cut(s)	55, 228, 271, 432, 502
SmiMI	CAYNNNNRTG	2 cut(s)	249, 721
SnaBI	TACGTA	1 cut(s)	372
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	5 cut(s)	58, 125, 454, 533, 566
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	156, 233
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	638, 676
TasI	AATT	5 cut(s)	58, 125, 454, 533, 566
TfiI	GAWTC	2 cut(s)	89, 635
Tru1I	TTAA	3 cut(s)	204, 278, 612
Tru9I	TTAA	3 cut(s)	204, 278, 612
TseI	GCWGC	2 cut(s)	241, 625
TspDTI	ATGAA	5 cut(s)	118, 239, 317, 509, 562
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	2 cut(s)	58, 454
XceI	RCATGY	2 cut(s)	248, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XspI	CTAG	2 cut(s)	156, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.