Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0019134

Physical Location & Seq

Genomic Coordinates Forward (+)

37701079 .. 37701645

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAATCACTGTAGAGTTCATGGGCAGTTGGAGCTTGGGGACCGGTGTGCGGAGCTTATTGAGCAGGTAGATCCCTCCTGCTTGGATGAGCAATCAAAGGCTGGCCTTATTCCTGTCAAAGAATCTGACCTGGTAAAGGAGAAAGAGAAGAAAAAAATAGCAGCACAAAATCTTTTAGAAGTGAGGAGTCGAGTCCATGAATATCGAGCAGGTGATAAATCGCATCCTGAGAACGATGAGATTTATGCTCAACTTAGGGGTTTAAGGGAACAGATGAAGGAGGCAGGCTACATTCCGGAGACTAGATTTGTGTTACAAGACATAGATCAAGAAGGCAAGGAAGATGCTCTGCTTGCCCATAGTGAGAGACTTGCTCTTGCTCATGGCCTCATCAGCAGCTCAGCTCGTTCAACCATTAGGGTTATCAAGAATCTTCGTGTTTGTGGCGATTGCCATAACGCACTGAAGATCATTTCGAAAATTGTAGGCAGAGAACTCATCATGCGAGATGCTAAGAGGTTCCACCATTTCAAAGACGGATTGTGTTCTTGCCGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

189

Amino Acids

21.47

Weight (kDa)

7.11

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Eplus_motif	PF20430	65 - 88	1.2e-06	E+ motif
DYW_deaminase	PF14432	96 - 188	4e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019134)

Species	Orthologous Gene IDs
malus_domestica	MD08G1235200.v1.1 MD15G1426500.v1.1
pyrus_communis	pycom08g20340 pycom08g20350 pycom15g37740 pycom15g37800 pycom15g37810 pycom15g37840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	2 cut(s)	55, 200
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	49, 136
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	411, 532
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	34, 55, 399, 404
AluI	AGCT	4 cut(s)	34, 55, 399, 404
Alw26I	GTCTC	2 cut(s)	293, 361
AlwI	GGATC	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	2 cut(s)	103, 385
ApeKI	GCWGC	2 cut(s)	161, 396
AsiGI	ACCGGT	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	173, 408
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	293, 361
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	2 cut(s)	55, 200
BisI	GCNGC	2 cut(s)	162, 397
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	2 cut(s)	163, 398
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	41, 521
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	232, 334, 499
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu1102I	GCTNAGC	1 cut(s)	400
Bpu14I	TTCGAA	1 cut(s)	476
BsaWI	WCCGGW	2 cut(s)	42, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 136
Bse118I	RCCGGY	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	91, 223
BseLI	CCNNNNNNNGG	2 cut(s)	49, 136
BseMII	CTCAG	2 cut(s)	219, 414
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	173, 408
BshFI	GGCC	2 cut(s)	105, 387
BshTI	ACCGGT	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	43, 296
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	49, 136
BsmAI	GTCTC	2 cut(s)	293, 361
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	105, 387
Bsp119I	TTCGAA	1 cut(s)	476
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	70, 325, 468
Bsp1720I	GCTNAGC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	105, 387
BspCNI	CTCAG	2 cut(s)	220, 413
BspEI	TCCGGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	41, 521
BspMI	ACCTGC	2 cut(s)	55, 200
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	3 cut(s)	70, 325, 468
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	103, 286, 354
BstDEI	CTNAG	4 cut(s)	228, 254, 400, 513
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	91, 223
BstKTI	GATC	3 cut(s)	73, 328, 471
BstMAI	GTCTC	2 cut(s)	293, 361
BstMBI	GATC	3 cut(s)	70, 325, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 61, 353, 393
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	173, 408
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	105, 387
BtsCI	GGATG	2 cut(s)	91, 223
BtsIMutI	CAGTG	2 cut(s)	7, 461
BveI	ACCTGC	2 cut(s)	55, 200
Cac8I	GCNNGC	3 cut(s)	103, 286, 354
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	4 cut(s)	20, 197, 383, 502
CviJI	RGCY	8 cut(s)	34, 55, 101, 105, 288, 387, 399, 404
CviKI_1	RGCY	8 cut(s)	34, 55, 101, 105, 288, 387, 399, 404
DdeI	CTNAG	4 cut(s)	228, 254, 400, 513
DpnI	GATC	3 cut(s)	72, 327, 470
DpnII	GATC	3 cut(s)	70, 325, 468
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	23, 200, 386, 505
FaiI	YATR	8 cut(s)	21, 198, 246, 323, 360, 384, 456, 503
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	4 cut(s)	19, 196, 382, 501
Fnu4HI	GCNGC	2 cut(s)	162, 397
FokI	GGATG	2 cut(s)	98, 210
Fsp4HI	GCNGC	2 cut(s)	162, 397
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	162, 397
HaeIII	GGCC	2 cut(s)	105, 387
HapII	CCGG	2 cut(s)	43, 296
Hin1II	CATG	4 cut(s)	23, 200, 386, 505
HinfI	GANTC	5 cut(s)	4, 122, 187, 192, 430
HpaII	CCGG	2 cut(s)	43, 296
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	4 cut(s)	227, 296, 329, 427
HpyAV	CCTTC	2 cut(s)	271, 326
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 61, 353, 393
HpyF3I	CTNAG	4 cut(s)	228, 254, 400, 513
Hsp92II	CATG	4 cut(s)	23, 200, 386, 505
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	70, 325, 468
LmnI	GCTCC	2 cut(s)	31, 52
Lsp1109I	GCAGC	2 cut(s)	173, 408
LweI	GCATC	3 cut(s)	232, 334, 499
MabI	ACCWGGT	1 cut(s)	129
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	3 cut(s)	72, 327, 470
MboI	GATC	3 cut(s)	70, 325, 468
MboII	GAAGA	4 cut(s)	160, 353, 425, 478
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	196, 201
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	85, 177, 274, 398, 510
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	1 cut(s)	263
MspI	CCGG	2 cut(s)	43, 296
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	31, 61, 353, 393
NdeII	GATC	3 cut(s)	70, 325, 468
NlaIII	CATG	4 cut(s)	23, 200, 386, 505
NlaIV	GGNNCC	2 cut(s)	41, 521
NspV	TTCGAA	1 cut(s)	476
PaqCI	CACCTGC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	4, 122, 430
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	163, 398
PleI	GAGTC	2 cut(s)	195, 200
PpsI	GAGTC	2 cut(s)	195, 200
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	41, 521
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	162, 397
Sau3AI	GATC	3 cut(s)	70, 325, 468
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	196, 201
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	8 cut(s)	36, 57, 69, 132, 214, 401, 406, 521
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	3 cut(s)	232, 334, 499
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	190, 205, 476
TasI	AATT	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	4, 122, 430
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	14, 468
TseI	GCWGC	2 cut(s)	161, 396
TspDTI	ATGAA	4 cut(s)	8, 17, 213, 290
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	2 cut(s)	14, 468
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.