pycom16g01470

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0017081
Physical Location & Seq
Forward (+)
918688 .. 920304
1617 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGGTAGGCTGCAAGGTTTGCATAAAAAACAGTACAGATAATTGGCTTAACACCCTTTTGCTTAGCAAATTCTTCGGTTCCTGCGGCGTTCATCAAGATCTTCGAAAAAACGAGAAGAATGTCTTCTGCATAGACTGCAGCCTCCTCCTCTGCAGGCATTGTATGACATCTCATTGCCTTCACACAAAGCTTCAGATCTGCAAATACGTTTATCATGATGTCGTTCGCCTTCAAGAAATTCAGAAGCATCTTGACTGCTCTAAAATTCAGACATATAAAATCAACGGAGAGAAAGCTGTGCATCTAAATCCTCGTCCTCAATCCAAAGACGCCAAACCATCAACAAAAGCAAAGTTCGGTGCTTCCTGTGAAGCTTGTGGGAAATATCTACAGGACATGCCAAATCGCTACTGCTCCATCGCGTGCAAGGCATCGGTAGTTTCAGTGACGCCGAAAGAGCACCAAAGTCACGAATTCATCACCGTTGCAGTACCCCAATATGCTGAATTTTCGCTAAAAGGTAACTACTACAATTCGGAAACAAATATGAGCGAAATGGAGTCGTCCTCTATCTCGTTAGCGGAGTCATCTGAGGAGATGAATACTTGGGTGTGTTCAGCATTGAAGCCGAGGAGGCTTTTGCACAAGAGGAAAGGCATTCCTCACAGAGCTCCTCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

228

Amino Acids

25.74

Weight (kDa)

8.95

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 68 - 143 5e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 422
AciI CCGC 2 cut(s) 84, 581
AcsI RAATTY 5 cut(s) 68, 237, 264, 473, 506
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 2 cut(s) 330, 449
AfaI GTAC 2 cut(s) 34, 492
AgsI TTSAA 2 cut(s) 233, 625
AluBI AGCT 4 cut(s) 190, 296, 374, 671
AluI AGCT 4 cut(s) 190, 296, 374, 671
Alw21I GWGCWC 2 cut(s) 462, 673
ApeKI GCWGC 2 cut(s) 9, 138
ApoI RAATTY 5 cut(s) 68, 237, 264, 473, 506
Asp700I GAANNNNTTC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 472
AsuII TTCGAA 1 cut(s) 103
BanII GRGCYC 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 462, 673
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 346, 425
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BfmI CTRYAG 3 cut(s) 136, 151, 389
BglI GCCNNNNNGGC 1 cut(s) 634
BglII AGATCT 2 cut(s) 97, 195
BisI GCNGC 3 cut(s) 10, 85, 139
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 3 cut(s) 11, 86, 140
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 3 cut(s) 256, 310, 440
BpiI GAAGAC 1 cut(s) 115
BplI GAGNNNNNCTC 3 cut(s) 551, 583, 660
Bpu1102I GCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 103
BsaHI GRCGYC 2 cut(s) 330, 449
BsaJI CCNNGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 629
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 5 cut(s) 134, 137, 608, 646, 663
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 462, 673
BsmI GAATGC 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 462, 673
Bsp143I GATC 2 cut(s) 97, 195
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 2 cut(s) 84, 581
BspCNI CTCAG 1 cut(s) 583
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 140, 155
BspT104I TTCGAA 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 2 cut(s) 97, 195
BssNI GRCGYC 2 cut(s) 330, 449
Bst4CI ACNGT 2 cut(s) 32, 484
BstACI GRCGYC 2 cut(s) 330, 449
BstAPI GCANNNNNTGC 2 cut(s) 18, 135
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 155, 424
BstDEI CTNAG 2 cut(s) 62, 591
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 2 cut(s) 100, 198
BstMBI GATC 2 cut(s) 97, 195
BstMWI GCNNNNNNNGC 5 cut(s) 18, 135, 428, 457, 634
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 3 cut(s) 136, 151, 389
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 2 cut(s) 97, 195
BstYI RGATCY 2 cut(s) 97, 195
BtgZI GCGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 155, 424
CciI TCATGA 1 cut(s) 214
CseI GACGC 2 cut(s) 338, 457
Csp6I GTAC 2 cut(s) 33, 491
CviAII CATG 2 cut(s) 215, 397
CviJI RGCY 9 cut(s) 9, 46, 141, 190, 296, 374, 628, 637, 671
CviKI_1 RGCY 9 cut(s) 9, 46, 141, 190, 296, 374, 628, 637, 671
CviQI GTAC 2 cut(s) 33, 491
DdeI CTNAG 2 cut(s) 62, 591
DpnI GATC 2 cut(s) 99, 197
DpnII GATC 2 cut(s) 97, 195
Ecl136II GAGCTC 1 cut(s) 671
Eco24I GRGCYC 1 cut(s) 673
Eco53kI GAGCTC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 671
EcoRI GAATTC 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 673
FaeI CATG 2 cut(s) 218, 400
FaiI YATR 9 cut(s) 23, 131, 164, 216, 274, 276, 398, 501, 548
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 214, 396
Fnu4HI GCNGC 3 cut(s) 10, 85, 139
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 3 cut(s) 10, 85, 139
GluI GCNGC 3 cut(s) 10, 85, 139
HgaI GACGC 2 cut(s) 338, 457
Hin1I GRCGYC 2 cut(s) 330, 449
Hin1II CATG 2 cut(s) 218, 400
HindIII AAGCTT 2 cut(s) 188, 372
HinfI GANTC 2 cut(s) 560, 584
HphI GGTGA 1 cut(s) 472
Hpy188I TCNGA 5 cut(s) 195, 243, 270, 538, 592
Hpy188III TCNNGA 5 cut(s) 95, 215, 233, 251, 470
HpyAV CCTTC 2 cut(s) 188, 239
HpyCH4III ACNGT 2 cut(s) 32, 484
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 135, 428, 457, 634
HpyF3I CTNAG 2 cut(s) 62, 591
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 2 cut(s) 330, 449
Hsp92II CATG 2 cut(s) 218, 400
Kzo9I GATC 2 cut(s) 97, 195
LmnI GCTCC 2 cut(s) 419, 676
LpnPI CCDG 4 cut(s) 94, 139, 377, 379
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 3 cut(s) 256, 310, 440
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 445, 467, 521
MalI GATC 2 cut(s) 99, 197
MboI GATC 2 cut(s) 97, 195
MboII GAAGA 4 cut(s) 64, 92, 115, 127
MflI RGATCY 2 cut(s) 97, 195
MhlI GDGCHC 2 cut(s) 462, 673
MluCI AATT 7 cut(s) 40, 68, 237, 264, 473, 506, 532
MlyI GAGTC 2 cut(s) 569, 593
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 657
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 5 cut(s) 18, 135, 428, 457, 634
NdeII GATC 2 cut(s) 97, 195
NlaIII CATG 2 cut(s) 218, 400
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 445, 467
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 1 cut(s) 103
PagI TCATGA 1 cut(s) 214
PctI GAATGC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 11, 86, 140
PleI GAGTC 2 cut(s) 568, 592
PpsI GAGTC 2 cut(s) 568, 592
Psp124BI GAGCTC 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 2 cut(s) 140, 155
PsuI RGATCY 2 cut(s) 97, 195
RsaI GTAC 2 cut(s) 34, 492
RsaNI GTAC 2 cut(s) 33, 491
SacI GAGCTC 1 cut(s) 673
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 10, 85, 139
Sau3AI GATC 2 cut(s) 97, 195
SchI GAGTC 2 cut(s) 569, 593
SduI GDGCHC 2 cut(s) 462, 673
SetI ASST 7 cut(s) 18, 192, 210, 298, 376, 523, 673
SfaNI GCATC 3 cut(s) 256, 310, 440
SfcI CTRYAG 3 cut(s) 136, 151, 389
SfuI TTCGAA 1 cut(s) 103
Sse9I AATT 7 cut(s) 40, 68, 237, 264, 473, 506, 532
SsiI CCGC 2 cut(s) 84, 581
SstI GAGCTC 1 cut(s) 673
TaaI ACNGT 2 cut(s) 32, 484
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 103
TasI AATT 7 cut(s) 40, 68, 237, 264, 473, 506, 532
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 445, 467
TseI GCWGC 2 cut(s) 9, 138
Tsp45I GTSAC 2 cut(s) 445, 467
TspDTI ATGAA 3 cut(s) 80, 466, 614
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 1 cut(s) 450
XapI RAATTY 5 cut(s) 68, 237, 264, 473, 506
XceI RCATGY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.