pycom16g04370

floral organ abscission

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
2748542 .. 2748856
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGCTTCGACTTCCTCTTTGAAATCGAAACACTTTTTGTCGTGCAAAAATACTGTGTTCGTTGTTCTTCTCGTTCTCAATCTTCTTATGGGGTGCTGCACTGCTACAAGGCTGGGGAAGACTCTGGTTGTGAGTCTGGACGGGAAGGCTTTGATGAATCTGGATCACACAACAACGTTTAATCCCCGAAAACACGAGACAGGTTTTCGATACAAAGGTCAGATATTCAGCTACTTCCCCAAAGGGACTATCATCCCTCCTTCTGGTCCTTCCAAGAGGCACAACTCAGTGGTGGACTCTACACCTAGAAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

10.1

Isoelectric Point (pI)

25.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68765 AT3G25655
prunus_persica Prupe.1G303500_v2.0.a1
pyrus_communis pycom13g04300 pycom16g04370
rosa_chinensis RchiOBHm_Chr4g0436131
rosa_multiflora Rmu_sc0006301.1_g000002
rosa_roxburghii Rroxscaffold_5G00377230
rosa_rugosa Rorug04G0292100
rosa_wichuraiana Rw4G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 176
AclWI GGATC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 96
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 306
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 299
BspPI GGATC 1 cut(s) 171
BssMI GATC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 294
Cfr13I GGNCC 1 cut(s) 266
CviJI RGCY 4 cut(s) 5, 112, 149, 231
CviKI_1 RGCY 4 cut(s) 5, 112, 149, 231
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 266
FaiI YATR 1 cut(s) 89
FaqI GGGAC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 97
GsaI CCCAGC 1 cut(s) 116
HinfI GANTC 4 cut(s) 121, 133, 157, 296
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 137, 161
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 139, 270, 279
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 45, 99
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 176
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 98, 110, 122, 146, 186, 249
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 176
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 59, 74, 130
MluCI AATT 1 cut(s) 310
MlyI GAGTC 3 cut(s) 115, 142, 290
MnlI CCTC 3 cut(s) 25, 267, 270
MseI TTAA 2 cut(s) 180, 313
NdeII GATC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 3 cut(s) 115, 141, 290
PpsI GAGTC 3 cut(s) 115, 141, 290
Psp1406I AACGTT 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 180, 313
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 3 cut(s) 115, 142, 290
SetI ASST 5 cut(s) 179, 205, 220, 233, 307
SinI GGWCC 1 cut(s) 266
Sse9I AATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 8, 26, 208
TasI AATT 1 cut(s) 310
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 180, 313
Tru9I TTAA 2 cut(s) 180, 313
TscAI CASTG 2 cut(s) 106, 294
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 2 cut(s) 106, 294
VpaK11BI GGWCC 1 cut(s) 266
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.