Cytochrome p450
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g23820 |
| malus_domestica | MD13G1118500.v1.1 MD16G1118600.v1.1 |
| prunus_persica | Prupe.1G226500_v2.0.a1 |
| pyrus_communis | pycom13g10320 pycom16g10160 |
| rosa_chinensis | RchiOBHm_Chr4g0430371 |
| rosa_laevigata | RLG00000006981 |
| rosa_multiflora | Rmu_ssc0000082.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00372170 |
| rosa_rugosa | Rorug04G0242700 |
| rosa_samantha | Rh4AG299100 Rh4BG305700 Rh4CG321600 Rh4DG303000 |
| rosa_wichuraiana | Rw4G025960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 495 |
| AatII | GACGTC | 1 cut(s) | 62 |
| Acc16I | TGCGCA | 1 cut(s) | 491 |
| Acc36I | ACCTGC | 2 cut(s) | 495, 1149 |
| AccB1I | GGYRCC | 1 cut(s) | 480 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 253 |
| AccI | GTMKAC | 1 cut(s) | 1506 |
| AccII | CGCG | 2 cut(s) | 447, 1563 |
| AciI | CCGC | 4 cut(s) | 836, 903, 1220, 1561 |
| AclI | AACGTT | 1 cut(s) | 719 |
| AclWI | GGATC | 1 cut(s) | 1386 |
| AcoI | YGGCCR | 1 cut(s) | 1405 |
| AcuI | CTGAAG | 1 cut(s) | 450 |
| AcvI | CACGTG | 2 cut(s) | 1099, 1117 |
| AcyI | GRCGYC | 2 cut(s) | 59, 481 |
| AdeI | CACNNNGTG | 1 cut(s) | 1577 |
| AfaI | GTAC | 4 cut(s) | 55, 65, 709, 746 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 207, 233, 253, 1219 |
| AflIII | ACRYGT | 2 cut(s) | 1096, 1359 |
| AgsI | TTSAA | 2 cut(s) | 1483, 1538 |
| AjiI | CACGTC | 1 cut(s) | 1360 |
| AjnI | CCWGG | 2 cut(s) | 308, 1420 |
| AleI | CACNNNNGTG | 1 cut(s) | 1097 |
| AluBI | AGCT | 8 cut(s) | 218, 327, 425, 932, 1259, 1387, 1598, 1602 |
| AluI | AGCT | 8 cut(s) | 218, 327, 425, 932, 1259, 1387, 1598, 1602 |
| Alw26I | GTCTC | 3 cut(s) | 127, 143, 1116 |
| AlwI | GGATC | 1 cut(s) | 1386 |
| AoxI | GGCC | 7 cut(s) | 224, 535, 1192, 1209, 1287, 1334, 1405 |
| ApaI | GGGCCC | 2 cut(s) | 1196, 1213 |
| ApeKI | GCWGC | 2 cut(s) | 354, 500 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspA2I | CCTAGG | 1 cut(s) | 382 |
| AspLEI | GCGC | 4 cut(s) | 447, 449, 483, 492 |
| AspS9I | GGNCC | 8 cut(s) | 212, 1192, 1193, 1209, 1210, 1222, 1287, 1318 |
| AsuC2I | CCSGG | 3 cut(s) | 147, 209, 1191 |
| AsuHPI | GGTGA | 2 cut(s) | 510, 856 |
| AsuNHI | GCTAGC | 3 cut(s) | 16, 928, 1598 |
| AvaII | GGWCC | 3 cut(s) | 212, 1222, 1318 |
| AvrII | CCTAGG | 1 cut(s) | 382 |
| AxyI | CCTNAGG | 1 cut(s) | 548 |
| BaeGI | GKGCMC | 2 cut(s) | 1196, 1213 |
| BanI | GGYRCC | 1 cut(s) | 480 |
| BanII | GRGCYC | 3 cut(s) | 1196, 1213, 1376 |
| BauI | CACGAG | 1 cut(s) | 339 |
| BbrPI | CACGTG | 2 cut(s) | 1099, 1117 |
| BbvCI | CCTCAGC | 1 cut(s) | 840 |
| BbvI | GCAGC | 2 cut(s) | 366, 512 |
| BccI | CCATC | 6 cut(s) | 255, 366, 1267, 1312, 1316, 1318 |
| BceAI | ACGGC | 1 cut(s) | 488 |
| BciT130I | CCWGG | 2 cut(s) | 310, 1422 |
| BcnI | CCSGG | 3 cut(s) | 147, 209, 1191 |
| BcoDI | GTCTC | 3 cut(s) | 127, 143, 1116 |
| BfoI | RGCGCY | 1 cut(s) | 484 |
| BfuAI | ACCTGC | 2 cut(s) | 495, 1149 |
| BisI | GCNGC | 5 cut(s) | 355, 501, 837, 904, 1561 |
| BlnI | CCTAGG | 1 cut(s) | 382 |
| BlpI | GCTNAGC | 1 cut(s) | 1497 |
| BlsI | GCNGC | 5 cut(s) | 356, 502, 838, 905, 1562 |
| Bme1390I | CCNGG | 5 cut(s) | 147, 209, 310, 1191, 1422 |
| Bme18I | GGWCC | 3 cut(s) | 212, 1222, 1318 |
| BmgBI | CACGTC | 1 cut(s) | 1360 |
| BmgT120I | GGNCC | 8 cut(s) | 212, 1192, 1193, 1209, 1210, 1222, 1287, 1318 |
| BmiI | GGNNCC | 7 cut(s) | 199, 213, 482, 1194, 1195, 1211, 1320 |
| BmrFI | CCNGG | 5 cut(s) | 147, 209, 310, 1191, 1422 |
| BmtI | GCTAGC | 3 cut(s) | 20, 932, 1602 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1516, 1548 |
| BpmI | CTGGAG | 1 cut(s) | 1046 |
| Bpu10I | CCTNAGC | 2 cut(s) | 328, 840 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1497 |
| BpuEI | CTTGAG | 2 cut(s) | 808, 1367 |
| BpuMI | CCSGG | 3 cut(s) | 147, 209, 1191 |
| BsaAI | YACGTR | 2 cut(s) | 1099, 1117 |
| BsaHI | GRCGYC | 2 cut(s) | 59, 481 |
| BsaJI | CCNNGG | 4 cut(s) | 145, 208, 382, 1420 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1346, 1376 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 207, 233, 253, 1219 |
| Bse118I | RCCGGY | 1 cut(s) | 1492 |
| Bse21I | CCTNAGG | 1 cut(s) | 548 |
| BseBI | CCWGG | 2 cut(s) | 310, 1422 |
| BseDI | CCNNGG | 4 cut(s) | 145, 208, 382, 1420 |
| BseGI | GGATG | 4 cut(s) | 358, 595, 1062, 1304 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 207, 233, 253, 1219 |
| BseMII | CTCAG | 5 cut(s) | 831, 931, 1189, 1329, 1488 |
| BsePI | GCGCGC | 1 cut(s) | 445 |
| BseRI | GAGGAG | 2 cut(s) | 86, 1367 |
| BseSI | GKGCMC | 2 cut(s) | 1196, 1213 |
| BseXI | GCAGC | 2 cut(s) | 366, 512 |
| BseYI | CCCAGC | 2 cut(s) | 218, 1255 |
| Bsh1236I | CGCG | 2 cut(s) | 447, 1563 |
| Bsh1285I | CGRYCG | 1 cut(s) | 406 |
| BshFI | GGCC | 7 cut(s) | 226, 537, 1194, 1211, 1289, 1336, 1407 |
| BshNI | GGYRCC | 1 cut(s) | 480 |
| BsiEI | CGRYCG | 1 cut(s) | 406 |
| BsiSI | CCGG | 6 cut(s) | 147, 208, 938, 1190, 1408, 1493 |
| BslFI | GGGAC | 3 cut(s) | 128, 225, 1015 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 207, 233, 253, 1219 |
| BsmAI | GTCTC | 3 cut(s) | 127, 143, 1116 |
| BsmFI | GGGAC | 3 cut(s) | 128, 225, 1015 |
| BsmI | GAATGC | 2 cut(s) | 320, 1185 |
| BsnI | GGCC | 7 cut(s) | 226, 537, 1194, 1211, 1289, 1336, 1407 |
| Bsp120I | GGGCCC | 2 cut(s) | 1192, 1209 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1196, 1213, 1376 |
| Bsp143I | GATC | 3 cut(s) | 30, 411, 1378 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1497 |
| BspACI | CCGC | 4 cut(s) | 836, 903, 1220, 1561 |
| BspANI | GGCC | 7 cut(s) | 226, 537, 1194, 1211, 1289, 1336, 1407 |
| BspCNI | CTCAG | 5 cut(s) | 832, 930, 1188, 1330, 1489 |
| BspFNI | CGCG | 2 cut(s) | 447, 1563 |
| BspLI | GGNNCC | 7 cut(s) | 199, 213, 482, 1194, 1195, 1211, 1320 |
| BspMI | ACCTGC | 2 cut(s) | 495, 1149 |
| BspOI | GCTAGC | 3 cut(s) | 20, 932, 1602 |
| BspPI | GGATC | 1 cut(s) | 1386 |
| BspT107I | GGYRCC | 1 cut(s) | 480 |
| BsrFI | RCCGGY | 1 cut(s) | 1492 |
| BssAI | RCCGGY | 1 cut(s) | 1492 |
| BssECI | CCNNGG | 4 cut(s) | 145, 208, 382, 1420 |
| BssHII | GCGCGC | 1 cut(s) | 445 |
| BssMI | GATC | 3 cut(s) | 30, 411, 1378 |
| BssNI | GRCGYC | 2 cut(s) | 59, 481 |
| BssSI | CACGAG | 1 cut(s) | 339 |
| BssT1I | CCWWGG | 1 cut(s) | 382 |
| Bst2BI | CACGAG | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 2 cut(s) | 310, 1422 |
| Bst4CI | ACNGT | 6 cut(s) | 137, 173, 197, 407, 1012, 1447 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 95, 809 |
| BstACI | GRCGYC | 2 cut(s) | 59, 481 |
| BstBAI | YACGTR | 2 cut(s) | 1099, 1117 |
| BstC8I | GCNNGC | 9 cut(s) | 18, 447, 930, 1155, 1261, 1389, 1461, 1558, 1600 |
| BstEII | GGTNACC | 1 cut(s) | 1488 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 231 |
| BstF5I | GGATG | 4 cut(s) | 358, 595, 1062, 1304 |
| BstFNI | CGCG | 2 cut(s) | 447, 1563 |
| BstH2I | RGCGCY | 1 cut(s) | 484 |
| BstHHI | GCGC | 4 cut(s) | 447, 449, 483, 492 |
| BstKTI | GATC | 3 cut(s) | 33, 414, 1381 |
| BstMAI | GTCTC | 3 cut(s) | 127, 143, 1116 |
| BstMBI | GATC | 3 cut(s) | 30, 411, 1378 |
| BstMCI | CGRYCG | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 487, 489, 929, 934, 1150, 1217, 1456, 1465 |
| BstNI | CCWGG | 2 cut(s) | 310, 1422 |
| BstNSI | RCATGY | 2 cut(s) | 1505, 1560 |
| BstPI | GGTNACC | 1 cut(s) | 1488 |
| BstSCI | CCNGG | 5 cut(s) | 145, 207, 308, 1189, 1420 |
| BstSLI | GKGCMC | 2 cut(s) | 1196, 1213 |
| BstUI | CGCG | 2 cut(s) | 447, 1563 |
| BstV1I | GCAGC | 2 cut(s) | 366, 512 |
| BstX2I | RGATCY | 1 cut(s) | 1378 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 222, 316, 1311 |
| BstYI | RGATCY | 1 cut(s) | 1378 |
| Bsu36I | CCTNAGG | 1 cut(s) | 548 |
| BsuRI | GGCC | 7 cut(s) | 226, 537, 1194, 1211, 1289, 1336, 1407 |
| BtgZI | GCGATG | 1 cut(s) | 1286 |
| BtrI | CACGTC | 1 cut(s) | 1360 |
| BtsCI | GGATG | 4 cut(s) | 358, 595, 1062, 1304 |
| BtsI | GCAGTG | 3 cut(s) | 366, 913, 1582 |
| BtsIMutI | CAGTG | 5 cut(s) | 133, 366, 913, 925, 1582 |
| BveI | ACCTGC | 2 cut(s) | 495, 1149 |
| Cac8I | GCNNGC | 9 cut(s) | 18, 447, 930, 1155, 1261, 1389, 1461, 1558, 1600 |
| CfoI | GCGC | 4 cut(s) | 447, 449, 483, 492 |
| Cfr10I | RCCGGY | 1 cut(s) | 1492 |
| Cfr13I | GGNCC | 8 cut(s) | 212, 1192, 1193, 1209, 1210, 1222, 1287, 1318 |
| CseI | GACGC | 1 cut(s) | 1552 |
| Csp6I | GTAC | 4 cut(s) | 54, 64, 708, 745 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1466, 1501 |
| CviQI | GTAC | 4 cut(s) | 54, 64, 708, 745 |
| DinI | GGCGCC | 1 cut(s) | 482 |
| DpnI | GATC | 3 cut(s) | 32, 413, 1380 |
| DpnII | GATC | 3 cut(s) | 30, 411, 1378 |
| DraIII | CACNNNGTG | 1 cut(s) | 1577 |
| EaeI | YGGCCR | 1 cut(s) | 1405 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 95, 809 |
| EarI | CTCTTC | 3 cut(s) | 14, 95, 809 |
| Eco130I | CCWWGG | 1 cut(s) | 382 |
| Eco147I | AGGCCT | 2 cut(s) | 537, 1336 |
| Eco24I | GRGCYC | 3 cut(s) | 1196, 1213, 1376 |
| Eco47I | GGWCC | 3 cut(s) | 212, 1222, 1318 |
| Eco57I | CTGAAG | 1 cut(s) | 450 |
| Eco72I | CACGTG | 2 cut(s) | 1099, 1117 |
| Eco81I | CCTNAGG | 1 cut(s) | 548 |
| Eco91I | GGTNACC | 1 cut(s) | 1488 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1193, 1318 |
| EcoO65I | GGTNACC | 1 cut(s) | 1488 |
| EcoRII | CCWGG | 2 cut(s) | 308, 1420 |
| EcoT14I | CCWWGG | 1 cut(s) | 382 |
| EcoT38I | GRGCYC | 3 cut(s) | 1196, 1213, 1376 |
| EgeI | GGCGCC | 1 cut(s) | 482 |
| EheI | GGCGCC | 1 cut(s) | 482 |
| ErhI | CCWWGG | 1 cut(s) | 382 |
| FaqI | GGGAC | 3 cut(s) | 128, 225, 1015 |
| FauNDI | CATATG | 2 cut(s) | 252, 510 |
| FblI | GTMKAC | 1 cut(s) | 1506 |
| Fnu4HI | GCNGC | 5 cut(s) | 355, 501, 837, 904, 1561 |
| FokI | GGATG | 4 cut(s) | 345, 602, 1049, 1291 |
| FriOI | GRGCYC | 3 cut(s) | 1196, 1213, 1376 |
| Fsp4HI | GCNGC | 5 cut(s) | 355, 501, 837, 904, 1561 |
| FspI | TGCGCA | 1 cut(s) | 491 |
| GlaI | GCGC | 4 cut(s) | 446, 448, 482, 491 |
| GluI | GCNGC | 5 cut(s) | 355, 501, 837, 904, 1561 |
| GsaI | CCCAGC | 2 cut(s) | 222, 1259 |
| GsuI | CTGGAG | 1 cut(s) | 1046 |
| HaeII | RGCGCY | 1 cut(s) | 484 |
| HaeIII | GGCC | 7 cut(s) | 226, 537, 1194, 1211, 1289, 1336, 1407 |
| HapII | CCGG | 6 cut(s) | 147, 208, 938, 1190, 1408, 1493 |
| HgaI | GACGC | 1 cut(s) | 1552 |
| HhaI | GCGC | 4 cut(s) | 447, 449, 483, 492 |
| Hin1I | GRCGYC | 2 cut(s) | 59, 481 |
| Hin6I | GCGC | 4 cut(s) | 445, 447, 481, 490 |
| HinP1I | GCGC | 4 cut(s) | 445, 447, 481, 490 |
| HincII | GTYRAC | 1 cut(s) | 579 |
| HindII | GTYRAC | 1 cut(s) | 579 |
| HinfI | GANTC | 5 cut(s) | 237, 528, 959, 1124, 1413 |
| HpaII | CCGG | 6 cut(s) | 147, 208, 938, 1190, 1408, 1493 |
| HphI | GGTGA | 2 cut(s) | 510, 856 |
| Hpy166II | GTNNAC | 3 cut(s) | 579, 1240, 1507 |
| Hpy188I | TCNGA | 8 cut(s) | 403, 411, 533, 964, 1129, 1178, 1378, 1516 |
| Hpy188III | TCNNGA | 6 cut(s) | 362, 468, 661, 1025, 1312, 1535 |
| Hpy8I | GTNNAC | 3 cut(s) | 579, 1240, 1507 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 64, 1568 |
| HpyAV | CCTTC | 5 cut(s) | 474, 592, 691, 1142, 1309 |
| HpyCH4III | ACNGT | 6 cut(s) | 137, 173, 197, 407, 1012, 1447 |
| HpyCH4IV | ACGT | 5 cut(s) | 59, 719, 1098, 1116, 1359 |
| HpyCH4V | TGCA | 7 cut(s) | 158, 634, 1153, 1183, 1450, 1474, 1580 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 487, 489, 929, 934, 1150, 1217, 1456, 1465 |
| HpySE526I | ACGT | 5 cut(s) | 59, 719, 1098, 1116, 1359 |
| Hsp92I | GRCGYC | 2 cut(s) | 59, 481 |
| HspAI | GCGC | 4 cut(s) | 445, 447, 481, 490 |
| KasI | GGCGCC | 1 cut(s) | 480 |
| Kzo9I | GATC | 3 cut(s) | 30, 411, 1378 |
| LmnI | GCTCC | 2 cut(s) | 466, 859 |
| Lsp1109I | GCAGC | 2 cut(s) | 366, 512 |
| MaeII | ACGT | 5 cut(s) | 59, 719, 1098, 1116, 1359 |
| MaeIII | GTNAC | 5 cut(s) | 131, 167, 824, 908, 1488 |
| MalI | GATC | 3 cut(s) | 32, 413, 1380 |
| MboI | GATC | 3 cut(s) | 30, 411, 1378 |
| MboII | GAAGA | 5 cut(s) | 82, 826, 953, 956, 1555 |
| MflI | RGATCY | 1 cut(s) | 1378 |
| MhlI | GDGCHC | 3 cut(s) | 1196, 1213, 1376 |
| MluCI | AATT | 6 cut(s) | 582, 679, 766, 830, 864, 1478 |
| Mly113I | GGCGCC | 1 cut(s) | 481 |
| MlyI | GAGTC | 3 cut(s) | 968, 1118, 1422 |
| MmeI | TCCRAC | 2 cut(s) | 426, 1152 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 7 cut(s) | 620, 722, 735, 765, 1164, 1439, 1590 |
| MslI | CAYNNNNRTG | 3 cut(s) | 163, 1097, 1555 |
| MspA1I | CMGCKG | 2 cut(s) | 218, 1259 |
| MspI | CCGG | 6 cut(s) | 147, 208, 938, 1190, 1408, 1493 |
| MspR9I | CCNGG | 5 cut(s) | 147, 209, 310, 1191, 1422 |
| Mva1269I | GAATGC | 2 cut(s) | 320, 1185 |
| MvaI | CCWGG | 2 cut(s) | 310, 1422 |
| MvnI | CGCG | 2 cut(s) | 447, 1563 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 487, 489, 929, 934, 1150, 1217, 1456, 1465 |
| NarI | GGCGCC | 1 cut(s) | 481 |
| NciI | CCSGG | 3 cut(s) | 147, 209, 1191 |
| NdeI | CATATG | 2 cut(s) | 252, 510 |
| NdeII | GATC | 3 cut(s) | 30, 411, 1378 |
| NheI | GCTAGC | 3 cut(s) | 16, 928, 1598 |
| NlaIV | GGNNCC | 7 cut(s) | 199, 213, 482, 1194, 1195, 1211, 1320 |
| NmuCI | GTSAC | 3 cut(s) | 131, 824, 908 |
| NsbI | TGCGCA | 1 cut(s) | 491 |
| NspI | RCATGY | 2 cut(s) | 1505, 1560 |
| OliI | CACNNNNGTG | 1 cut(s) | 1097 |
| PaeI | GCATGC | 1 cut(s) | 1560 |
| PaqCI | CACCTGC | 1 cut(s) | 495 |
| PauI | GCGCGC | 1 cut(s) | 445 |
| PceI | AGGCCT | 2 cut(s) | 537, 1336 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 65, 1356, 1560 |
| PctI | GAATGC | 2 cut(s) | 320, 1185 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 237, 528 |
| PflFI | GACNNNGTC | 1 cut(s) | 1244 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 253 |
| PkrI | GCNGC | 5 cut(s) | 356, 502, 838, 905, 1562 |
| PleI | GAGTC | 3 cut(s) | 967, 1118, 1421 |
| PluTI | GGCGCC | 1 cut(s) | 484 |
| PmaCI | CACGTG | 2 cut(s) | 1099, 1117 |
| PmlI | CACGTG | 2 cut(s) | 1099, 1117 |
| PpsI | GAGTC | 3 cut(s) | 967, 1118, 1421 |
| Ppu21I | YACGTR | 2 cut(s) | 1099, 1117 |
| PpuMI | RGGWCCY | 1 cut(s) | 1318 |
| Psp1406I | AACGTT | 1 cut(s) | 719 |
| Psp5II | RGGWCCY | 1 cut(s) | 1318 |
| Psp6I | CCWGG | 2 cut(s) | 308, 1420 |
| PspCI | CACGTG | 2 cut(s) | 1099, 1117 |
| PspEI | GGTNACC | 1 cut(s) | 1488 |
| PspFI | CCCAGC | 2 cut(s) | 218, 1255 |
| PspGI | CCWGG | 2 cut(s) | 308, 1420 |
| PspN4I | GGNNCC | 7 cut(s) | 199, 213, 482, 1194, 1195, 1211, 1320 |
| PspOMI | GGGCCC | 2 cut(s) | 1192, 1209 |
| PspPI | GGNCC | 8 cut(s) | 212, 1192, 1193, 1209, 1210, 1222, 1287, 1318 |
| PspPPI | RGGWCCY | 1 cut(s) | 1318 |
| PsuI | RGATCY | 1 cut(s) | 1378 |
| PsyI | GACNNNGTC | 1 cut(s) | 1244 |
| PteI | GCGCGC | 1 cut(s) | 445 |
| PvuII | CAGCTG | 2 cut(s) | 218, 1259 |
| RsaI | GTAC | 4 cut(s) | 55, 65, 709, 746 |
| RsaNI | GTAC | 4 cut(s) | 54, 64, 708, 745 |
| RseI | CAYNNNNRTG | 3 cut(s) | 163, 1097, 1555 |
| SaqAI | TTAA | 7 cut(s) | 620, 722, 735, 765, 1164, 1439, 1590 |
| SatI | GCNGC | 5 cut(s) | 355, 501, 837, 904, 1561 |
| Sau3AI | GATC | 3 cut(s) | 30, 411, 1378 |
| Sau96I | GGNCC | 8 cut(s) | 212, 1192, 1193, 1209, 1210, 1222, 1287, 1318 |
| SchI | GAGTC | 3 cut(s) | 968, 1118, 1422 |
| ScrFI | CCNGG | 5 cut(s) | 147, 209, 310, 1191, 1422 |
| SduI | GDGCHC | 3 cut(s) | 1196, 1213, 1376 |
| SfoI | GGCGCC | 1 cut(s) | 482 |
| SinI | GGWCC | 3 cut(s) | 212, 1222, 1318 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 163, 1097, 1555 |
| SmlI | CTYRAG | 2 cut(s) | 787, 1382 |
| SmoI | CTYRAG | 2 cut(s) | 787, 1382 |
| SphI | GCATGC | 1 cut(s) | 1560 |
| Sse9I | AATT | 6 cut(s) | 582, 679, 766, 830, 864, 1478 |
| SseBI | AGGCCT | 2 cut(s) | 537, 1336 |
| SsiI | CCGC | 4 cut(s) | 836, 903, 1220, 1561 |
| SspDI | GGCGCC | 1 cut(s) | 480 |
| SspI | AATATT | 1 cut(s) | 630 |
| StuI | AGGCCT | 2 cut(s) | 537, 1336 |
| StyD4I | CCNGG | 5 cut(s) | 145, 207, 308, 1189, 1420 |
| StyI | CCWWGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 6 cut(s) | 137, 173, 197, 407, 1012, 1447 |
| TaiI | ACGT | 5 cut(s) | 62, 722, 1101, 1119, 1362 |
| TaqI | TCGA | 4 cut(s) | 29, 68, 997, 1350 |
| TasI | AATT | 6 cut(s) | 582, 679, 766, 830, 864, 1478 |
| TauI | GCSGC | 3 cut(s) | 839, 906, 1563 |
| TfiI | GAWTC | 2 cut(s) | 237, 528 |
| Tru1I | TTAA | 7 cut(s) | 620, 722, 735, 765, 1164, 1439, 1590 |
| Tru9I | TTAA | 7 cut(s) | 620, 722, 735, 765, 1164, 1439, 1590 |
| TscAI | CASTG | 5 cut(s) | 140, 373, 913, 925, 1582 |
| TseFI | GTSAC | 3 cut(s) | 131, 824, 908 |
| TseI | GCWGC | 2 cut(s) | 354, 500 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 824, 908 |
| TspDTI | ATGAA | 5 cut(s) | 17, 582, 611, 1336, 1556 |
| TspRI | CASTG | 5 cut(s) | 140, 373, 913, 925, 1582 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 3 cut(s) | 212, 1222, 1318 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 231 |
| XceI | RCATGY | 2 cut(s) | 1505, 1560 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 668 |
| XmaJI | CCTAGG | 1 cut(s) | 382 |
| XmiI | GTMKAC | 1 cut(s) | 1506 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| ZraI | GACGTC | 1 cut(s) | 60 |