pycom16g11460

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014570
Physical Location & Seq
Forward (+)
7973378 .. 7974973
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGGCCCAAATGTATGTTCTGTATCCCACAGAGAGAGAGAGAGTTGACGAGAGCAGAGAAGATAGGAAAATGGCGAAGAGGTGGTGGACAATCGGAGCGGCTGTGGCGATAATTGGAATAGGGAGGGAGCTGAGCAAGCACTATGGGTTGGACAAGGACGCTGTGATCAAGGTGTTTGCTGAATTGTCCGATCGCCTGGGAGTATGGGCCATCCCACTGTACGTTTCGATCCACACTATCACTCTCGCTCTCTGCCTGCCCTACGCTGTCTTCTTCGAGGCCGCCGCTTCTATGCTCTTCGGCTTCTTCCCGGCCGTCATTTGCGTCTTTGCCGCCAAGCTGCTCGGCGCTTCCCTCTCTTTCTGGATTGGCAGGTTAATTTTCAAGAGTTCAAGTTCAGCAATGGACTGGGTCCAGAAGAATAAGTACTTCAATGTCCTATCCAGAGGAGTTGAGCGAGATGGTTGGAGATTTGTCCTACTTGCCCGGTTCTCGCCAATGCCATCCTACATTATAAATTATGCCCTTGCTGCAACAAAAGTTCGGTTTGTCGTGGATTTTCTGCTGCCGACAGTTATTGGATGCATGCCGATGATTTTACAAAACACATCCATTGGCAGCCTGGCTGGTGCTGCCGTTTCTTCGGCATCGGGCTCTCAAAAATCTCAAATTTGGTCGTACCTTTTTCCTTTACTAGGAATTGTGTCAAGCATTCTTATTTCCTTGAGAATTAAGAAGTACTCTACTGAAAATTTAGTGACCGAATCATCTCCAAGTCACGACTCCAGTAACTTAGTTAACTCTAATGACAAGGACTTGAAAAAAGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

278

Amino Acids

30.79

Weight (kDa)

9.45

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 87 - 207 9.2e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44960
fragaria_vesca FvH4_4g22120
malus_domestica MD13G1134400.v1.1 MD16G1145000.v1.1
prunus_persica Prupe.1G211100_v2.0.a1
pyrus_communis pycom13g11720 pycom16g11460
rosa_chinensis RchiOBHm_Chr4g0428371
rosa_laevigata RLG00000007157
rosa_multiflora Rmu_sc0004698.1_g000011
rosa_roxburghii Rroxscaffold_5G00370030
rosa_rugosa Rorug04G0225100
rosa_samantha Rh4AG282100 Rh4BG287700 Rh4CG303400 Rh4DG284700
rosa_wichuraiana Rw4G024480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 363
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 4 cut(s) 98, 282, 285, 333
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 669, 751
AfaI GTAC 4 cut(s) 221, 428, 680, 740
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 4 cut(s) 385, 393, 433, 820
AjnI CCWGG 2 cut(s) 195, 621
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 2 cut(s) 130, 340
AluI AGCT 2 cut(s) 130, 340
AlwI GGATC 1 cut(s) 223
AoxI GGCC 4 cut(s) 3, 207, 279, 312
ApeKI GCWGC 5 cut(s) 340, 530, 565, 618, 632
ApoI RAATTY 2 cut(s) 669, 751
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 4, 207, 412
AsuC2I CCSGG 2 cut(s) 311, 487
AvaII GGWCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 656
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 5 cut(s) 327, 517, 552, 619, 630
BccI CCATC 3 cut(s) 218, 455, 511
BceAI ACGGC 2 cut(s) 299, 620
BciT130I CCWGG 2 cut(s) 197, 623
BciVI GTATCC 1 cut(s) 33
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 2 cut(s) 311, 487
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 363
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 9 cut(s) 99, 282, 285, 333, 341, 531, 566, 619, 633
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 9 cut(s) 100, 283, 286, 334, 342, 532, 567, 620, 634
BmcAI AGTACT 2 cut(s) 428, 740
Bme1390I CCNGG 4 cut(s) 197, 311, 487, 623
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 4, 207, 412
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 4 cut(s) 197, 311, 487, 623
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 2 cut(s) 572, 656
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 769
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 2 cut(s) 311, 487
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 413, 786
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 197, 623
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 4 cut(s) 210, 503, 587, 608
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 413, 786
BseRI GAGGAG 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 5 cut(s) 327, 517, 552, 619, 630
Bsh1285I CGRYCG 2 cut(s) 193, 315
BshFI GGCC 4 cut(s) 5, 209, 281, 314
BsiEI CGRYCG 2 cut(s) 193, 315
BsiSI CCGG 2 cut(s) 311, 487
BslI CCNNNNNNNGG 1 cut(s) 695
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 4 cut(s) 5, 209, 281, 314
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 3 cut(s) 165, 190, 228
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 4 cut(s) 98, 282, 285, 333
BspANI GGCC 4 cut(s) 5, 209, 281, 314
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 413
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 2 cut(s) 413, 786
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 165, 190, 228
Bst2UI CCWGG 2 cut(s) 197, 623
Bst4CI ACNGT 2 cut(s) 219, 574
Bst6I CTCTTC 2 cut(s) 71, 302
BstC8I GCNNGC 3 cut(s) 137, 257, 587
BstDEI CTNAG 2 cut(s) 131, 793
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 4 cut(s) 210, 503, 587, 608
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 3 cut(s) 168, 193, 231
BstMBI GATC 3 cut(s) 165, 190, 228
BstMCI CGRYCG 2 cut(s) 193, 315
BstMWI GCNNNNNNNGC 4 cut(s) 104, 136, 530, 632
BstNI CCWGG 2 cut(s) 197, 623
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 4 cut(s) 195, 309, 485, 621
BstV1I GCAGC 5 cut(s) 327, 517, 552, 619, 630
BstV2I GAAGAC 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 4 cut(s) 5, 209, 281, 314
BtsCI GGATG 4 cut(s) 210, 503, 587, 608
BtsIMutI CAGTG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 137, 257, 587
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 4, 207, 412
CseI GACGC 2 cut(s) 167, 313
Csp6I GTAC 4 cut(s) 220, 427, 679, 739
CviAII CATG 1 cut(s) 586
CviQI GTAC 4 cut(s) 220, 427, 679, 739
DdeI CTNAG 2 cut(s) 131, 793
DpnI GATC 3 cut(s) 167, 192, 230
DpnII GATC 3 cut(s) 165, 190, 228
EaeI YGGCCR 1 cut(s) 312
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 71, 302
EarI CTCTTC 2 cut(s) 71, 302
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 412
Eco52I CGGCCG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 195, 621
EcoT22I ATGCAT 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 656
FaeI CATG 1 cut(s) 589
FaiI YATR 7 cut(s) 15, 144, 205, 293, 515, 522, 587
FatI CATG 1 cut(s) 585
FbaI TGATCA 1 cut(s) 165
Fnu4HI GCNGC 9 cut(s) 99, 282, 285, 333, 341, 531, 566, 619, 633
FokI GGATG 4 cut(s) 197, 490, 594, 595
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 9 cut(s) 99, 282, 285, 333, 341, 531, 566, 619, 633
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 349
GluI GCNGC 9 cut(s) 99, 282, 285, 333, 341, 531, 566, 619, 633
GsuI CTGGAG 1 cut(s) 769
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 4 cut(s) 5, 209, 281, 314
HapII CCGG 2 cut(s) 311, 487
HgaI GACGC 2 cut(s) 167, 313
HhaI GCGC 1 cut(s) 350
Hin1II CATG 1 cut(s) 589
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 2 cut(s) 46, 799
HindII GTYRAC 2 cut(s) 46, 799
HinfI GANTC 2 cut(s) 764, 782
HpaI GTTAAC 1 cut(s) 799
HpaII CCGG 2 cut(s) 311, 487
Hpy166II GTNNAC 3 cut(s) 46, 87, 799
Hpy188I TCNGA 2 cut(s) 95, 190
Hpy188III TCNNGA 5 cut(s) 364, 385, 415, 444, 779
Hpy8I GTNNAC 3 cut(s) 46, 87, 799
HpyCH4III ACNGT 2 cut(s) 219, 574
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 533, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 136, 530, 632
HpyF3I CTNAG 2 cut(s) 131, 793
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 589
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 165
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 3 cut(s) 165, 190, 228
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 2 cut(s) 95, 127
Lsp1109I GCAGC 5 cut(s) 327, 517, 552, 619, 630
LweI GCATC 2 cut(s) 572, 656
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 757, 776, 788
MalI GATC 3 cut(s) 167, 192, 230
MbiI CCGCTC 1 cut(s) 98
MboI GATC 3 cut(s) 165, 190, 228
MboII GAAGA 8 cut(s) 71, 88, 262, 265, 289, 298, 430, 633
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 8 cut(s) 111, 182, 378, 517, 669, 699, 729, 751
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 2 cut(s) 129, 446
MnlI CCTC 5 cut(s) 72, 117, 271, 365, 440
Mph1103I ATGCAT 1 cut(s) 587
MseI TTAA 3 cut(s) 377, 732, 798
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 2 cut(s) 311, 487
MspR9I CCNGG 4 cut(s) 197, 311, 487, 623
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 197, 623
MwoI GCNNNNNNNGC 4 cut(s) 104, 136, 530, 632
NciI CCSGG 2 cut(s) 311, 487
NdeII GATC 3 cut(s) 165, 190, 228
NlaIII CATG 1 cut(s) 589
NlaIV GGNNCC 1 cut(s) 413
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 757, 776
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 589
PaeI GCATGC 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 302
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 764
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 9 cut(s) 100, 283, 286, 334, 342, 532, 567, 620, 634
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 195, 621
PspGI CCWGG 2 cut(s) 195, 621
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 3 cut(s) 4, 207, 412
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 193
RsaI GTAC 4 cut(s) 221, 428, 680, 740
RsaNI GTAC 4 cut(s) 220, 427, 679, 739
RseI CAYNNNNRTG 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 377, 732, 798
SatI GCNGC 9 cut(s) 99, 282, 285, 333, 341, 531, 566, 619, 633
Sau3AI GATC 3 cut(s) 165, 190, 228
Sau96I GGNCC 3 cut(s) 4, 207, 412
ScaI AGTACT 2 cut(s) 428, 740
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 4 cut(s) 197, 311, 487, 623
SduI GDGCHC 1 cut(s) 656
SetI ASST 8 cut(s) 83, 132, 174, 225, 342, 377, 684, 829
SfaNI GCATC 2 cut(s) 572, 656
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
SphI GCATGC 1 cut(s) 589
Sse9I AATT 8 cut(s) 111, 182, 378, 517, 669, 699, 729, 751
SsiI CCGC 4 cut(s) 98, 282, 285, 333
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 4 cut(s) 195, 309, 485, 621
TaaI ACNGT 2 cut(s) 219, 574
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 227, 276
TaqII GACCGA 1 cut(s) 776
TasI AATT 8 cut(s) 111, 182, 378, 517, 669, 699, 729, 751
TatI WGTACW 2 cut(s) 426, 738
TauI GCSGC 4 cut(s) 101, 284, 287, 335
TfiI GAWTC 1 cut(s) 764
Tru1I TTAA 3 cut(s) 377, 732, 798
Tru9I TTAA 3 cut(s) 377, 732, 798
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 757, 776
TseI GCWGC 5 cut(s) 340, 530, 565, 618, 632
Tsp45I GTSAC 2 cut(s) 757, 776
TspRI CASTG 1 cut(s) 222
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 412
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 2 cut(s) 669, 751
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 2 cut(s) 428, 740
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.