Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom16g12240 |
| rosa_chinensis | RchiOBHm_Chr4g0425871 |
| rosa_roxburghii | Rroxscaffold_5G00369180 |
| rosa_samantha | Rh4CG282600 |
| rosa_wichuraiana | Rw4G022800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 115, 347 |
| AclWI | GGATC | 3 cut(s) | 294, 514, 527 |
| AcsI | RAATTY | 1 cut(s) | 495 |
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AgsI | TTSAA | 2 cut(s) | 98, 186 |
| AjnI | CCWGG | 2 cut(s) | 484, 539 |
| AleI | CACNNNNGTG | 1 cut(s) | 212 |
| AluBI | AGCT | 4 cut(s) | 182, 340, 403, 532 |
| AluI | AGCT | 4 cut(s) | 182, 340, 403, 532 |
| Alw26I | GTCTC | 2 cut(s) | 239, 375 |
| AlwI | GGATC | 3 cut(s) | 294, 514, 527 |
| ApeKI | GCWGC | 1 cut(s) | 400 |
| ApoI | RAATTY | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 1 cut(s) | 566 |
| BamHI | GGATCC | 1 cut(s) | 519 |
| BbsI | GAAGAC | 1 cut(s) | 223 |
| BbvI | GCAGC | 1 cut(s) | 412 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 70, 104 |
| BciT130I | CCWGG | 2 cut(s) | 486, 541 |
| BcoDI | GTCTC | 2 cut(s) | 239, 375 |
| BfaI | CTAG | 2 cut(s) | 341, 524 |
| BisI | GCNGC | 1 cut(s) | 401 |
| BlsI | GCNGC | 1 cut(s) | 402 |
| Bme1390I | CCNGG | 2 cut(s) | 486, 541 |
| BmiI | GGNNCC | 2 cut(s) | 436, 521 |
| BmrFI | CCNGG | 2 cut(s) | 486, 541 |
| BmsI | GCATC | 2 cut(s) | 334, 387 |
| BpiI | GAAGAC | 1 cut(s) | 223 |
| BpmI | CTGGAG | 2 cut(s) | 27, 399 |
| Bsa29I | ATCGAT | 1 cut(s) | 289 |
| BsaI | GGTCTC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 1 cut(s) | 411 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 213, 243 |
| Bse3DI | GCAATG | 2 cut(s) | 372, 544 |
| BseBI | CCWGG | 2 cut(s) | 486, 541 |
| BseCI | ATCGAT | 1 cut(s) | 289 |
| BseDI | CCNNGG | 1 cut(s) | 411 |
| BseGI | GGATG | 1 cut(s) | 132 |
| BseMI | GCAATG | 2 cut(s) | 372, 544 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseXI | GCAGC | 1 cut(s) | 412 |
| BshVI | ATCGAT | 1 cut(s) | 289 |
| BsmAI | GTCTC | 2 cut(s) | 239, 375 |
| BsmI | GAATGC | 1 cut(s) | 541 |
| Bso31I | GGTCTC | 1 cut(s) | 375 |
| Bsp1407I | TGTACA | 1 cut(s) | 303 |
| Bsp143I | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| BspACI | CCGC | 2 cut(s) | 115, 347 |
| BspCNI | CTCAG | 1 cut(s) | 374 |
| BspDI | ATCGAT | 1 cut(s) | 289 |
| BspLI | GGNNCC | 2 cut(s) | 436, 521 |
| BspPI | GGATC | 3 cut(s) | 294, 514, 527 |
| BspTNI | GGTCTC | 1 cut(s) | 375 |
| BsrDI | GCAATG | 2 cut(s) | 372, 544 |
| BsrGI | TGTACA | 1 cut(s) | 303 |
| BssECI | CCNNGG | 1 cut(s) | 411 |
| BssMI | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| BssT1I | CCWWGG | 1 cut(s) | 411 |
| Bst2UI | CCWGG | 2 cut(s) | 486, 541 |
| Bst6I | CTCTTC | 1 cut(s) | 483 |
| BstAUI | TGTACA | 1 cut(s) | 303 |
| BstDEI | CTNAG | 1 cut(s) | 361 |
| BstF5I | GGATG | 1 cut(s) | 132 |
| BstKTI | GATC | 5 cut(s) | 70, 151, 289, 293, 522 |
| BstMAI | GTCTC | 2 cut(s) | 239, 375 |
| BstMBI | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| BstNI | CCWGG | 2 cut(s) | 486, 541 |
| BstSCI | CCNGG | 2 cut(s) | 484, 539 |
| BstV1I | GCAGC | 1 cut(s) | 412 |
| BstV2I | GAAGAC | 1 cut(s) | 223 |
| BstX2I | RGATCY | 1 cut(s) | 519 |
| BstYI | RGATCY | 1 cut(s) | 519 |
| Bsu15I | ATCGAT | 1 cut(s) | 289 |
| BsuTUI | ATCGAT | 1 cut(s) | 289 |
| BtsCI | GGATG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| ClaI | ATCGAT | 1 cut(s) | 289 |
| CseI | GACGC | 1 cut(s) | 257 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviJI | RGCY | 8 cut(s) | 170, 182, 340, 403, 423, 464, 489, 532 |
| CviKI_1 | RGCY | 8 cut(s) | 170, 182, 340, 403, 423, 464, 489, 532 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 1 cut(s) | 361 |
| DpnI | GATC | 5 cut(s) | 69, 150, 288, 292, 521 |
| DpnII | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| Eam1104I | CTCTTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 1 cut(s) | 411 |
| Eco31I | GGTCTC | 1 cut(s) | 375 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| EcoRII | CCWGG | 2 cut(s) | 484, 539 |
| EcoT14I | CCWWGG | 1 cut(s) | 411 |
| ErhI | CCWWGG | 1 cut(s) | 411 |
| FaiI | YATR | 7 cut(s) | 42, 62, 123, 200, 302, 501, 552 |
| Fnu4HI | GCNGC | 1 cut(s) | 401 |
| FokI | GGATG | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 1 cut(s) | 401 |
| FspBI | CTAG | 2 cut(s) | 341, 524 |
| GluI | GCNGC | 1 cut(s) | 401 |
| GsuI | CTGGAG | 2 cut(s) | 27, 399 |
| HgaI | GACGC | 1 cut(s) | 257 |
| HindIII | AAGCTT | 1 cut(s) | 180 |
| HinfI | GANTC | 3 cut(s) | 144, 350, 359 |
| HphI | GGTGA | 1 cut(s) | 566 |
| Hpy166II | GTNNAC | 1 cut(s) | 510 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 72, 364 |
| Hpy188III | TCNNGA | 2 cut(s) | 6, 98 |
| Hpy8I | GTNNAC | 1 cut(s) | 510 |
| HpyAV | CCTTC | 2 cut(s) | 181, 551 |
| HpyCH4IV | ACGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 2 cut(s) | 400, 503 |
| HpyF3I | CTNAG | 1 cut(s) | 361 |
| HpySE526I | ACGT | 1 cut(s) | 330 |
| Kzo9I | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| LmnI | GCTCC | 3 cut(s) | 8, 22, 221 |
| Lsp1109I | GCAGC | 1 cut(s) | 412 |
| LweI | GCATC | 2 cut(s) | 334, 387 |
| MaeI | CTAG | 2 cut(s) | 341, 524 |
| MaeII | ACGT | 1 cut(s) | 330 |
| MalI | GATC | 5 cut(s) | 69, 150, 288, 292, 521 |
| MboI | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| MboII | GAAGA | 6 cut(s) | 21, 86, 223, 285, 406, 470 |
| MflI | RGATCY | 1 cut(s) | 519 |
| MluCI | AATT | 3 cut(s) | 82, 152, 495 |
| MlyI | GAGTC | 1 cut(s) | 353 |
| MmeI | TCCRAC | 1 cut(s) | 412 |
| MnlI | CCTC | 3 cut(s) | 220, 312, 492 |
| MslI | CAYNNNNRTG | 2 cut(s) | 212, 549 |
| MspA1I | CMGCKG | 1 cut(s) | 532 |
| MspR9I | CCNGG | 2 cut(s) | 486, 541 |
| Mva1269I | GAATGC | 1 cut(s) | 541 |
| MvaI | CCWGG | 2 cut(s) | 486, 541 |
| NdeII | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| NlaIV | GGNNCC | 2 cut(s) | 436, 521 |
| OliI | CACNNNNGTG | 1 cut(s) | 212 |
| PctI | GAATGC | 1 cut(s) | 541 |
| PfeI | GAWTC | 2 cut(s) | 144, 350 |
| PkrI | GCNGC | 1 cut(s) | 402 |
| PleI | GAGTC | 1 cut(s) | 353 |
| PpsI | GAGTC | 1 cut(s) | 353 |
| Psp6I | CCWGG | 2 cut(s) | 484, 539 |
| PspGI | CCWGG | 2 cut(s) | 484, 539 |
| PspN4I | GGNNCC | 2 cut(s) | 436, 521 |
| PsuI | RGATCY | 1 cut(s) | 519 |
| PvuII | CAGCTG | 1 cut(s) | 532 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| RseI | CAYNNNNRTG | 2 cut(s) | 212, 549 |
| SatI | GCNGC | 1 cut(s) | 401 |
| Sau3AI | GATC | 5 cut(s) | 67, 148, 286, 290, 519 |
| SchI | GAGTC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 2 cut(s) | 486, 541 |
| SetI | ASST | 9 cut(s) | 56, 184, 231, 333, 342, 405, 440, 534, 562 |
| SfaNI | GCATC | 2 cut(s) | 334, 387 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 212, 549 |
| Sse9I | AATT | 3 cut(s) | 82, 152, 495 |
| SsiI | CCGC | 2 cut(s) | 115, 347 |
| SspMI | CTAG | 2 cut(s) | 341, 524 |
| StyD4I | CCNGG | 2 cut(s) | 484, 539 |
| StyI | CCWWGG | 1 cut(s) | 411 |
| TaiI | ACGT | 1 cut(s) | 333 |
| TaqI | TCGA | 4 cut(s) | 66, 135, 147, 289 |
| TasI | AATT | 3 cut(s) | 82, 152, 495 |
| TatI | WGTACW | 1 cut(s) | 303 |
| TfiI | GAWTC | 2 cut(s) | 144, 350 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TseI | GCWGC | 1 cut(s) | 400 |
| TspDTI | ATGAA | 3 cut(s) | 110, 143, 361 |
| TspGWI | ACGGA | 1 cut(s) | 532 |
| TspRI | CASTG | 1 cut(s) | 181 |
| XapI | RAATTY | 1 cut(s) | 495 |
| XspI | CTAG | 2 cut(s) | 341, 524 |