Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0021288

Physical Location & Seq

Genomic Coordinates Reverse (-)

48298914 .. 48300452

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCTGGAGACCAGAAATGGTATCTCTCCTTATCCTTCTTATATTCGTCCTTCTTTTCAACAAAAACAGAGGAGAAATGCTTATCTCTATCCCAAGGGATTTGGCAAAGGAAATGGTACTTATCTTTCTATTTTCTTGGCATTGGCTGATTGGAAACCAATTCCTCTTTGCCAAGTCGTTGTCGTGGGTTTGGCTCAGTTCATTAGTCTAAGCATTTTGGAGGCGGAGAAAGAGTTTTTGATGAAGAATACTTGCATTGTGGAGGCAGAGGTCATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

93

Amino Acids

10.51

Weight (kDa)

9.0

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021288)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g12240
rosa_chinensis	RchiOBHm_Chr4g0425871
rosa_roxburghii	Rroxscaffold_5G00369180
rosa_samantha	Rh4CG282600
rosa_wichuraiana	Rw4G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	2
BpmI	CTGGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
BseDI	CCNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	2
Bso31I	GGTCTC	1 cut(s)	2
BspACI	CCGC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	2
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	195, 209
BstMAI	GTCTC	1 cut(s)	2
Csp6I	GTAC	1 cut(s)	117
CviJI	RGCY	2 cut(s)	146, 194
CviKI_1	RGCY	2 cut(s)	146, 194
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	195, 209
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	2
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaiI	YATR	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	45, 60
HpyCH4V	TGCA	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	195, 209
LpnPI	CCDG	1 cut(s)	25
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	5 cut(s)	63, 174, 214, 256, 262
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SetI	ASST	1 cut(s)	273
SgeI	CNNG	7 cut(s)	17, 24, 106, 148, 185, 196, 264
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	93
TasI	AATT	1 cut(s)	159
TspDTI	ATGAA	2 cut(s)	190, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.