Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021288

Physical Location & Seq

Genomic Coordinates Reverse (-)

54011117 .. 54011760

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG282600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTTTTGCAAAGGAAATTTGCTTTCACCGGAGGATGTTTCGCTCGCCCAGCTTTGATAAGCTTATGCCTCTTAAAGAATTTACTGATTCCTCGAATGGATATCTCATTGACGACACCTGCGTGCTTGCATGGAGCTGAGGTTTTCGTTTGTAAAGAAAGAACAAAAGGCAAAAGAGAGTATTTATCAAAGATAAATGATGCCTTTATCTGCAAGCAGGTCTGGAAGGTTAAGAATTTTTCAAAGTTGACATGTGAACCATTCGATGCTGGAGACCAGAAACGGCGGATAAAGCTCTATCCCAAGGGATTTGGCAAAGGAAATGGTACTTATCTTTCTATTTTCTTGGCATTGGCTGATTGGAAACCAATTCCTCCTGTGTCCAAAATATTTGTAGCGTTTACCCTGCGCATCGTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

9.92

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	74 - 139	8.4e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021288)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g12240
rosa_chinensis	RchiOBHm_Chr4g0425871
rosa_roxburghii	Rroxscaffold_5G00369180
rosa_samantha	Rh4CG282600
rosa_wichuraiana	Rw4G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc16I	TGCGCA	1 cut(s)	410
Acc36I	ACCTGC	2 cut(s)	127, 208
AciI	CCGC	1 cut(s)	286
AcsI	RAATTY	3 cut(s)	17, 79, 235
AfaI	GTAC	1 cut(s)	328
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	243
AleI	CACNNNNGTG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	53, 63, 137, 295
AluI	AGCT	4 cut(s)	53, 63, 137, 295
Alw26I	GTCTC	1 cut(s)	267
ApoI	RAATTY	3 cut(s)	17, 79, 235
AspLEI	GCGC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	267
BfuAI	ACCTGC	2 cut(s)	127, 208
BmsI	GCATC	2 cut(s)	190, 256
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	130
BspMI	ACCTGC	2 cut(s)	127, 208
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	303
BstC8I	GCNNGC	4 cut(s)	46, 124, 128, 215
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 292, 417
BstNSI	RCATGY	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	41
BveI	ACCTGC	2 cut(s)	127, 208
Cac8I	GCNNGC	4 cut(s)	46, 124, 128, 215
CfoI	GCGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	2 cut(s)	131, 252
CviJI	RGCY	6 cut(s)	53, 63, 137, 295, 356, 420
CviKI_1	RGCY	6 cut(s)	53, 63, 137, 295, 356, 420
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	134, 255
FaiI	YATR	3 cut(s)	67, 132, 253
FatI	CATG	2 cut(s)	130, 251
FokI	GGATG	1 cut(s)	48
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	291
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	134, 255
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	3 cut(s)	249, 257, 402
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	249, 257, 402
HpyAV	CCTTC	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	10, 130, 213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 292, 417
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	134, 255
HspAI	GCGC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	9 cut(s)	43, 63, 132, 203, 208, 255, 290, 390, 419
LweI	GCATC	2 cut(s)	190, 256
MluCI	AATT	4 cut(s)	17, 79, 235, 369
MnlI	CCTC	5 cut(s)	26, 80, 102, 133, 384
MseI	TTAA	2 cut(s)	74, 231
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	50, 292, 417
NlaIII	CATG	2 cut(s)	134, 255
NsbI	TGCGCA	1 cut(s)	410
NspI	RCATGY	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	74, 231
SetI	ASST	8 cut(s)	55, 65, 121, 139, 144, 222, 231, 297
SfaNI	GCATC	2 cut(s)	190, 256
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	4 cut(s)	17, 79, 235, 369
SsiI	CCGC	1 cut(s)	286
SspI	AATATT	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	2 cut(s)	94, 264
TasI	AATT	4 cut(s)	17, 79, 235, 369
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	74, 231
Tru9I	TTAA	2 cut(s)	74, 231
XapI	RAATTY	3 cut(s)	17, 79, 235
XceI	RCATGY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.