Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0021288

Physical Location & Seq

Genomic Coordinates Reverse (-)

8536037 .. 8536836

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCTGGAGCAACTGCTCCCCAGATTTCTTCGGAAGTGTATGCTGTTTTCAGGTTGTTTATACTCGATCAGAATAACGGCAATTACTTCGTTCTTCAAGAACCAAAGGAAAGGCGGTTTCATAGGATGAAACTCGATTGGGGATTCGATCAATTTCTTTCCCACAAAGCCTTCACTGAAGCTTCAAATGGATTTCTCATAGATGACACTTGTGTGTTGGGAGCAGAGGTCTTCGTTTCTAAAGAGACAAGCAAAGGCAAAGGAGAGCGTCTATCAATGGTAAAGGATCGATCTTCTGGTATGTACAAGAATACTTGGAGGATTGACAACGTATCAAAGCTAGATGCGGAATCCTACGACTCAGAAACATTCATTGCTGGAGACCAGAAATGGAAGATGCAGCTCTATCCCAAGGGAAAAGGCTTGGGAGTTGGAACCTATCTTGCTTTTTATCTGGCGTTAGCCGAACCGAAATCTCTTCCTCCTGGCTGTCAAATTTATGCAAAGTTTACCCTACGGATCCTAGACCAGCTGAATGCCTGGCATTGCTATGGTGAAGGTAAAGATTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

192

Amino Acids

21.73

Weight (kDa)

6.83

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	1 - 77	6.4e-16	MATH domain
MATH_2	PF22486	105 - 179	1.4e-19	MATH domain
MATH	PF00917	108 - 177	5.7e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021288)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g12240
rosa_chinensis	RchiOBHm_Chr4g0425871
rosa_roxburghii	Rroxscaffold_5G00369180
rosa_samantha	Rh4CG282600
rosa_wichuraiana	Rw4G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 347
AclWI	GGATC	3 cut(s)	294, 514, 527
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	98, 186
AjnI	CCWGG	2 cut(s)	484, 539
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	182, 340, 403, 532
AluI	AGCT	4 cut(s)	182, 340, 403, 532
Alw26I	GTCTC	2 cut(s)	239, 375
AlwI	GGATC	3 cut(s)	294, 514, 527
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	2 cut(s)	486, 541
BcoDI	GTCTC	2 cut(s)	239, 375
BfaI	CTAG	2 cut(s)	341, 524
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	486, 541
BmiI	GGNNCC	2 cut(s)	436, 521
BmrFI	CCNGG	2 cut(s)	486, 541
BmsI	GCATC	2 cut(s)	334, 387
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	27, 399
Bsa29I	ATCGAT	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse3DI	GCAATG	2 cut(s)	372, 544
BseBI	CCWGG	2 cut(s)	486, 541
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	132
BseMI	GCAATG	2 cut(s)	372, 544
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	239, 375
BsmI	GAATGC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	5 cut(s)	67, 148, 286, 290, 519
BspACI	CCGC	2 cut(s)	115, 347
BspCNI	CTCAG	1 cut(s)	374
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	436, 521
BspPI	GGATC	3 cut(s)	294, 514, 527
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	372, 544
BsrGI	TGTACA	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	67, 148, 286, 290, 519
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	486, 541
Bst6I	CTCTTC	1 cut(s)	483
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	5 cut(s)	70, 151, 289, 293, 522
BstMAI	GTCTC	2 cut(s)	239, 375
BstMBI	GATC	5 cut(s)	67, 148, 286, 290, 519
BstNI	CCWGG	2 cut(s)	486, 541
BstSCI	CCNGG	2 cut(s)	484, 539
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	8 cut(s)	170, 182, 340, 403, 423, 464, 489, 532
CviKI_1	RGCY	8 cut(s)	170, 182, 340, 403, 423, 464, 489, 532
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	5 cut(s)	69, 150, 288, 292, 521
DpnII	GATC	5 cut(s)	67, 148, 286, 290, 519
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	484, 539
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaiI	YATR	7 cut(s)	42, 62, 123, 200, 302, 501, 552
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	2 cut(s)	341, 524
GluI	GCNGC	1 cut(s)	401
GsuI	CTGGAG	2 cut(s)	27, 399
HgaI	GACGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	3 cut(s)	144, 350, 359
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	34, 72, 364
Hpy188III	TCNNGA	2 cut(s)	6, 98
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	181, 551
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	400, 503
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	67, 148, 286, 290, 519
LmnI	GCTCC	3 cut(s)	8, 22, 221
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	334, 387
MaeI	CTAG	2 cut(s)	341, 524
MaeII	ACGT	1 cut(s)	330
MalI	GATC	5 cut(s)	69, 150, 288, 292, 521
MboI	GATC	5 cut(s)	67, 148, 286, 290, 519
MboII	GAAGA	6 cut(s)	21, 86, 223, 285, 406, 470
MflI	RGATCY	1 cut(s)	519
MluCI	AATT	3 cut(s)	82, 152, 495
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	3 cut(s)	220, 312, 492
MslI	CAYNNNNRTG	2 cut(s)	212, 549
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	486, 541
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	486, 541
NdeII	GATC	5 cut(s)	67, 148, 286, 290, 519
NlaIV	GGNNCC	2 cut(s)	436, 521
OliI	CACNNNNGTG	1 cut(s)	212
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	144, 350
PkrI	GCNGC	1 cut(s)	402
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	484, 539
PspGI	CCWGG	2 cut(s)	484, 539
PspN4I	GGNNCC	2 cut(s)	436, 521
PsuI	RGATCY	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	212, 549
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	5 cut(s)	67, 148, 286, 290, 519
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	486, 541
SetI	ASST	9 cut(s)	56, 184, 231, 333, 342, 405, 440, 534, 562
SfaNI	GCATC	2 cut(s)	334, 387
SmiMI	CAYNNNNRTG	2 cut(s)	212, 549
Sse9I	AATT	3 cut(s)	82, 152, 495
SsiI	CCGC	2 cut(s)	115, 347
SspMI	CTAG	2 cut(s)	341, 524
StyD4I	CCNGG	2 cut(s)	484, 539
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	66, 135, 147, 289
TasI	AATT	3 cut(s)	82, 152, 495
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	144, 350
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	110, 143, 361
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	495
XspI	CTAG	2 cut(s)	341, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.