pycom16g13040

Huntingtin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015094
Physical Location & Seq
Forward (+)
9268432 .. 9269337
906 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGGAGGGAGGTGGAGAAGAAGGAGTCGAGATGGTGGTGGACTCCAAGGACTTGCAGCAGCAGAGCAAAGCCTTCGATAAGCTCACCGACCGCGTGGAGGATCGATCCAGCGTGGGAATGGAAGTCGATTCCACCCGCGTCCAGGAGGCCATGGCTTCCATCGCCGCCTCCTCCGAAGCCGACTGGAATGCTATGCGATTGAGGGAGAAGGAATTGGCTGCAGTGAAGATCAATGCAGGTGATGTTGACATAATTGCAAATGAGCTAGAGTTGGACAACAAGGTTGCCGAGAGGACCTTGCGGGAGCACAAAGGCGATGCCGTCGCTGCCATTCGACACTTGCTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.77

Weight (kDa)

4.7

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_HYPK PF19026 75 - 115 1.1e-16 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06610
fragaria_vesca FvH4_4g19820
malus_domestica MD13G1153200.v1.1 MD16G1153600.v1.1
prunus_persica Prupe.1G116800_v2.0.a1
pyrus_communis pycom16g13040
rosa_chinensis RchiOBHm_Chr4g0425361
rosa_laevigata RLG00000007373
rosa_multiflora Rmu_sc0001900.1_g000049
rosa_roxburghii Rroxscaffold_5G00367350
rosa_rugosa Rorug04G0202500
rosa_samantha Rh4AG259700 Rh4BG265600 Rh4CG276900 Rh4DG261600
rosa_wichuraiana Rw4G022480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
AccII CGCG 2 cut(s) 93, 138
AciI CCGC 4 cut(s) 91, 136, 165, 301
AclWI GGATC 2 cut(s) 99, 108
AfiI CCNNNNNNNGG 2 cut(s) 97, 142
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 82, 265
AluI AGCT 2 cut(s) 82, 265
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 2 cut(s) 99, 108
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 4 cut(s) 55, 58, 218, 326
ArsI GACNNNNNNTTYG 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 76, 251
AvaII GGWCC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 67, 70, 205, 313
BccI CCATC 2 cut(s) 25, 167
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 4 cut(s) 55, 89, 170, 204
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 2 cut(s) 266, 349
BfmI CTRYAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 5 cut(s) 56, 59, 165, 219, 327
BlsI GCNGC 5 cut(s) 57, 60, 166, 220, 328
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 45, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 142
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 45, 150
BseLI CCNNNNNNNGG 2 cut(s) 97, 142
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 4 cut(s) 67, 70, 205, 313
Bsh1236I CGCG 2 cut(s) 93, 138
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 97, 142
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 100, 104, 228
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 4 cut(s) 91, 136, 165, 301
BspANI GGCC 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 103
BspFNI CGCG 2 cut(s) 93, 138
BspMAI CTGCAG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 99, 108
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 45, 150
BssMI GATC 3 cut(s) 100, 104, 228
BssT1I CCWWGG 2 cut(s) 45, 150
Bst2UI CCWGG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 150
BstFNI CGCG 2 cut(s) 93, 138
BstKTI GATC 3 cut(s) 103, 107, 231
BstMBI GATC 3 cut(s) 100, 104, 228
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 161, 326
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 2 cut(s) 93, 138
BstV1I GCAGC 4 cut(s) 67, 70, 205, 313
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 1 cut(s) 149
BsuTUI ATCGAT 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 150
BtgZI GCGATG 2 cut(s) 145, 330
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 103
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 151
CviJI RGCY 7 cut(s) 71, 82, 149, 155, 179, 218, 265
CviKI_1 RGCY 7 cut(s) 71, 82, 149, 155, 179, 218, 265
DpnI GATC 3 cut(s) 102, 106, 230
DpnII GATC 3 cut(s) 100, 104, 228
Eco130I CCWWGG 2 cut(s) 45, 150
Eco47I GGWCC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 45, 150
ErhI CCWWGG 2 cut(s) 45, 150
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 152, 194, 251
FatI CATG 1 cut(s) 150
FauI CCCGC 2 cut(s) 143, 294
Fnu4HI GCNGC 5 cut(s) 56, 59, 165, 219, 327
Fsp4HI GCNGC 5 cut(s) 56, 59, 165, 219, 327
FspBI CTAG 2 cut(s) 266, 349
GluI GCNGC 5 cut(s) 56, 59, 165, 219, 327
HaeIII GGCC 1 cut(s) 149
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 24, 41, 128
HphI GGTGA 2 cut(s) 76, 251
Hpy166II GTNNAC 2 cut(s) 40, 247
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 40, 247
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 14, 82, 202
HpyCH4V TGCA 4 cut(s) 55, 221, 236, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 326
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 3 cut(s) 100, 104, 228
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 121, 128, 155, 169, 222
Lsp1109I GCAGC 4 cut(s) 67, 70, 205, 313
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 266, 349
MalI GATC 3 cut(s) 102, 106, 230
MboI GATC 3 cut(s) 100, 104, 228
MboII GAAGA 2 cut(s) 29, 238
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 212, 252
MlyI GAGTC 2 cut(s) 33, 35
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 6 cut(s) 91, 139, 178, 181, 195, 285
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 93, 138
MwoI GCNNNNNNNGC 2 cut(s) 161, 326
NcoI CCATGG 1 cut(s) 150
NdeII GATC 3 cut(s) 100, 104, 228
NlaIII CATG 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 227
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 5 cut(s) 57, 60, 166, 220, 328
PleI GAGTC 2 cut(s) 32, 35
PpsI GAGTC 2 cut(s) 32, 35
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PstI CTGCAG 1 cut(s) 223
SatI GCNGC 5 cut(s) 56, 59, 165, 219, 327
Sau3AI GATC 3 cut(s) 100, 104, 228
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 2 cut(s) 33, 35
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 13, 84, 241, 267, 285, 299
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 294
Sse9I AATT 2 cut(s) 212, 252
SsiI CCGC 4 cut(s) 91, 136, 165, 301
SspMI CTAG 2 cut(s) 266, 349
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 45, 150
TaqI TCGA 5 cut(s) 27, 75, 103, 126, 334
TasI AATT 2 cut(s) 212, 252
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 228
TseI GCWGC 4 cut(s) 55, 58, 218, 326
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XspI CTAG 2 cut(s) 266, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.