pycom16g13060

Iron-Sulfur binding protein C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014717
Physical Location & Seq
Reverse (-)
9313194 .. 9316642
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGGCAAGCATCCATCGGTACGACATTGCACCATACTTCATCTTGATATGCCTTCCTAAGAGAAAAAGCACAACCAAAGTGAAGGTTACAAGCAGCAAGGGCATTGAAGAAGTGAAGAATCTCATAAAAACTGTTGGGATTCCATCAAAAACCTCCTCTCCAGCAAAATCTCTTGAAAATGGCAACTGGGTCAAGCTCATCTGCGGCGCAAGCTTCGAGGATGTGGTTGATATCAGGAATCTTTCTCTGGTTTACACTCTTGCAGGAGTTGATTGCATAGACTGTGCGGCGGATGTGTCAGTGGTGAGTGCAGTGAACGAGGGGATTGATGCTGCAATTGGGATTTGTCCCCTTCCGAGGCCTTGGGTGATGATCAGCGTTAATGATGACAAAGATCTTCACTTTCGCAAGGCCGAGTTTGATCCAGAGGATTGTCCACTTGACTGTTCACGGCCTTGTGAGAGAGTTTGTCCTGCTGATGCAATATCATTGGGGGCTCAAAAATCAACAGGACAGTTCTTTTATGGAACCAATATACCTGATACATTTAAGGGTGGAGTTCTAACTGAACGCTGCTATGGCTGTGGCCGCTGCATTCCAGTATGCCCCTACGATAAAATAAGAGTGTCCTCGTACATAAGAGATGCTTATGCGACCTCCGAACTTCTCAAAAGAAATGATGTTGATGCCTTAGAGATTCATACAACTGGAAGGCAGATTGCTCCATTTAAAGAACTTTGGGATGGCTTGGGTGATTCAGTTAAGCATCTGCGACTAGCAGCAGTTAGCTTGCCTGATAATGGGGAATCAACTGTATCGTCAATGAATGCTATGTACTCAGTTATGGAACCAGATCTGTGTTGCTTCAATCTATGGCAGTTGGATGGCCGCCCCATGAGTGGAGATATTGGTCGAGGTGCCACAAGAGAATCGATTGCTTTTGCTCTTCGTTTGGCTGCTATAAAAGAAAGGCCTCGTGGATTTCTTCAATTAGCTGGTGGCACCAATGCTCACACCGTTGATGGGTTGAGGAAAGTCGGACTTTTCCAAACGGCATCCTTCCCAAATACAACTGGATCACCTAATTCACTGCATCCTATGATTAGTGGTGTTGCATATGGTGGCTATGCACGAAAGATTGTTGGAAGAATCCTGAGCTATATGCAATCACAGCACGGCGTCACCAGTATTGAGGATTATCCAGAGCATCTCCTTCAGGCAATCAGAGAGGCACTTTCTTTGGTAGGAACTGTCAAATGTTACAATCCGTTTCCAGTAAATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fer4 Fer4_9 LdpA_C

Protein Analysis

429

Amino Acids

46.63

Weight (kDa)

7.03

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LdpA_Fe-S-bd PF25160 145 - 212 2.5e-21 LdpA Fe-S cluster-binding domain
Fer4_9 PF13187 148 - 205 5.9e-06 4Fe-4S dicluster domain
Fer4_7 PF12838 151 - 205 5.7e-06 4Fe-4S dicluster domain
LdpA_C PF12617 222 - 416 4.2e-63 Light dependent period A C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014717)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730 FvH4_4g19730
malus_domestica MD16G1154200.v1.1
prunus_persica Prupe.1G117500_v2.0.a1 Prupe.1G117500_v2.0.a1
pyrus_communis pycom16g13060
rosa_chinensis RchiOBHm_Chr4g0425231
rosa_laevigata RLG00000007384
rosa_multiflora Rmu_sc0004716.1_g000005
rosa_roxburghii Rroxscaffold_5G00367260
rosa_rugosa Rorug04G0202000
rosa_samantha Rh4BG264400 Rh4DG260500
rosa_wichuraiana Rw4G022410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 917, 1001
AciI CCGC 5 cut(s) 204, 287, 290, 589, 889
AclWI GGATC 2 cut(s) 416, 1084
AcoI YGGCCR 2 cut(s) 586, 886
AcuI CTGAAG 1 cut(s) 1199
AcyI GRCGYC 1 cut(s) 1179
AfaI GTAC 3 cut(s) 20, 635, 836
AfiI CCNNNNNNNGG 4 cut(s) 357, 800, 899, 1023
AgsI TTSAA 4 cut(s) 107, 176, 868, 989
AluBI AGCT 5 cut(s) 196, 213, 789, 995, 1158
AluI AGCT 5 cut(s) 196, 213, 789, 995, 1158
AlwI GGATC 2 cut(s) 416, 1084
AoxI GGCC 6 cut(s) 359, 411, 452, 586, 886, 971
ApeKI GCWGC 6 cut(s) 93, 332, 573, 591, 779, 956
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 5 cut(s) 316, 379, 764, 1071, 1174
BanI GGYRCC 2 cut(s) 917, 1001
BanII GRGCYC 1 cut(s) 499
BauI CACGAG 1 cut(s) 975
BbvI GCAGC 6 cut(s) 105, 319, 560, 578, 791, 943
BccI CCATC 5 cut(s) 21, 151, 737, 878, 1016
BceAI ACGGC 3 cut(s) 467, 1068, 1192
BclI TGATCA 1 cut(s) 372
BfaI CTAG 1 cut(s) 776
BglII AGATCT 2 cut(s) 394, 853
BmiI GGNNCC 4 cut(s) 529, 849, 919, 1003
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 9 cut(s) 18, 319, 469, 634, 676, 775, 1064, 1102, 1216
BmuI ACTGGG 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 1154
Bsa29I ATCGAT 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 1179
BsaJI CCNNGG 2 cut(s) 356, 362
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 800, 899, 1023
Bse1I ACTGG 6 cut(s) 191, 599, 712, 1078, 1185, 1274
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 932
BseDI CCNNGG 2 cut(s) 356, 362
BseGI GGATG 7 cut(s) 9, 226, 298, 748, 889, 1055, 1093
BseLI CCNNNNNNNGG 4 cut(s) 357, 800, 899, 1023
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 852, 1145
BseNI ACTGG 6 cut(s) 191, 599, 712, 1078, 1185, 1274
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 6 cut(s) 105, 319, 560, 578, 791, 943
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 6 cut(s) 361, 413, 454, 588, 888, 973
BshNI GGYRCC 2 cut(s) 917, 1001
BshVI ATCGAT 1 cut(s) 932
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 357, 800, 899, 1023
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 2 cut(s) 594, 832
BsnI GGCC 6 cut(s) 361, 413, 454, 588, 888, 973
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 5 cut(s) 372, 394, 421, 853, 1076
BspACI CCGC 5 cut(s) 204, 287, 290, 589, 889
BspANI GGCC 6 cut(s) 361, 413, 454, 588, 888, 973
BspCNI CTCAG 2 cut(s) 851, 1146
BspDI ATCGAT 1 cut(s) 932
BspLI GGNNCC 4 cut(s) 529, 849, 919, 1003
BspPI GGATC 2 cut(s) 416, 1084
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 2 cut(s) 917, 1001
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 6 cut(s) 191, 599, 712, 1078, 1185, 1274
BssECI CCNNGG 2 cut(s) 356, 362
BssMI GATC 5 cut(s) 372, 394, 421, 853, 1076
BssNI GRCGYC 1 cut(s) 1179
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 975
Bst4CI ACNGT 7 cut(s) 133, 284, 446, 516, 814, 1018, 1252
Bst6I CTCTTC 1 cut(s) 951
BstACI GRCGYC 1 cut(s) 1179
BstC8I GCNNGC 3 cut(s) 7, 211, 791
BstDEI CTNAG 4 cut(s) 57, 691, 838, 1154
BstF5I GGATG 7 cut(s) 9, 226, 298, 748, 889, 1055, 1093
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 5 cut(s) 375, 397, 424, 856, 1079
BstMBI GATC 5 cut(s) 372, 394, 421, 853, 1076
BstMWI GCNNNNNNNGC 5 cut(s) 99, 210, 579, 588, 1171
BstV1I GCAGC 6 cut(s) 105, 319, 560, 578, 791, 943
BstX2I RGATCY 2 cut(s) 394, 853
BstYI RGATCY 2 cut(s) 394, 853
Bsu15I ATCGAT 1 cut(s) 932
BsuRI GGCC 6 cut(s) 361, 413, 454, 588, 888, 973
BsuTUI ATCGAT 1 cut(s) 932
BtsCI GGATG 7 cut(s) 9, 226, 298, 748, 889, 1055, 1093
BtsI GCAGTG 2 cut(s) 318, 1088
BtsIMutI CAGTG 3 cut(s) 306, 318, 1088
Cac8I GCNNGC 3 cut(s) 7, 211, 791
CfoI GCGC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 932
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 3 cut(s) 19, 634, 835
CviAII CATG 1 cut(s) 895
CviQI GTAC 3 cut(s) 19, 634, 835
DdeI CTNAG 4 cut(s) 57, 691, 838, 1154
DpnI GATC 5 cut(s) 374, 396, 423, 855, 1078
DpnII GATC 5 cut(s) 372, 394, 421, 853, 1076
DraI TTTAAA 1 cut(s) 730
EaeI YGGCCR 2 cut(s) 586, 886
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 362
Eco147I AGGCCT 2 cut(s) 361, 973
Eco24I GRGCYC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 1199
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 898
FalI AAGNNNNNCTT 4 cut(s) 631, 663, 1026, 1058
FaqI GGGAC 1 cut(s) 333
FatI CATG 1 cut(s) 894
FauNDI CATATG 1 cut(s) 1117
FbaI TGATCA 1 cut(s) 372
FokI GGATG 6 cut(s) 233, 305, 755, 896, 1042, 1080
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 1 cut(s) 776
GlaI GCGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 6 cut(s) 361, 413, 454, 588, 888, 973
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 1179
Hin1II CATG 1 cut(s) 898
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 8 cut(s) 118, 139, 238, 697, 755, 806, 929, 1149
HphI GGTGA 5 cut(s) 316, 379, 764, 1071, 1174
Hpy166II GTNNAC 4 cut(s) 253, 316, 437, 449
Hpy188I TCNGA 4 cut(s) 357, 661, 1040, 1226
Hpy188III TCNNGA 6 cut(s) 43, 173, 235, 425, 1153, 1202
Hpy8I GTNNAC 4 cut(s) 253, 316, 437, 449
HpyAV CCTTC 6 cut(s) 62, 76, 362, 705, 1069, 1223
HpyCH4III ACNGT 7 cut(s) 133, 284, 446, 516, 814, 1018, 1252
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 210, 579, 588, 1171
HpyF3I CTNAG 4 cut(s) 57, 691, 838, 1154
Hsp92I GRCGYC 1 cut(s) 1179
Hsp92II CATG 1 cut(s) 898
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 5 cut(s) 372, 394, 421, 853, 1076
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 6 cut(s) 105, 319, 560, 578, 791, 943
LweI GCATC 9 cut(s) 18, 319, 469, 634, 676, 775, 1064, 1102, 1216
MaeI CTAG 1 cut(s) 776
MaeIII GTNAC 3 cut(s) 85, 1180, 1259
MalI GATC 5 cut(s) 374, 396, 423, 855, 1078
MboI GATC 5 cut(s) 372, 394, 421, 853, 1076
MboII GAAGA 6 cut(s) 119, 127, 389, 938, 977, 1158
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 394, 853
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 3 cut(s) 336, 989, 1084
MmeI TCCRAC 3 cut(s) 861, 1018, 1123
MseI TTAA 4 cut(s) 381, 549, 729, 762
MspA1I CMGCKG 1 cut(s) 591
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 2 cut(s) 594, 832
MwoI GCNNNNNNNGC 5 cut(s) 99, 210, 579, 588, 1171
NdeI CATATG 1 cut(s) 1117
NdeII GATC 5 cut(s) 372, 394, 421, 853, 1076
NlaIII CATG 1 cut(s) 898
NlaIV GGNNCC 4 cut(s) 529, 849, 919, 1003
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 1180
PceI AGGCCT 2 cut(s) 361, 973
PciSI GCTCTTC 1 cut(s) 951
PctI GAATGC 2 cut(s) 594, 832
PfeI GAWTC 8 cut(s) 118, 139, 238, 697, 755, 806, 929, 1149
PspN4I GGNNCC 4 cut(s) 529, 849, 919, 1003
PsuI RGATCY 2 cut(s) 394, 853
RsaI GTAC 3 cut(s) 20, 635, 836
RsaNI GTAC 3 cut(s) 19, 634, 835
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 4 cut(s) 381, 549, 729, 762
Sau3AI GATC 5 cut(s) 372, 394, 421, 853, 1076
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 9 cut(s) 18, 319, 469, 634, 676, 775, 1064, 1102, 1216
Sse9I AATT 3 cut(s) 336, 989, 1084
SseBI AGGCCT 2 cut(s) 361, 973
SsiI CCGC 5 cut(s) 204, 287, 290, 589, 889
SspMI CTAG 1 cut(s) 776
StuI AGGCCT 2 cut(s) 361, 973
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 7 cut(s) 133, 284, 446, 516, 814, 1018, 1252
TaqI TCGA 3 cut(s) 216, 913, 932
TasI AATT 3 cut(s) 336, 989, 1084
TatI WGTACW 1 cut(s) 834
TauI GCSGC 4 cut(s) 207, 290, 591, 891
TfiI GAWTC 8 cut(s) 118, 139, 238, 697, 755, 806, 929, 1149
Tru1I TTAA 4 cut(s) 381, 549, 729, 762
Tru9I TTAA 4 cut(s) 381, 549, 729, 762
TscAI CASTG 3 cut(s) 306, 318, 1095
TseFI GTSAC 1 cut(s) 1180
TseI GCWGC 6 cut(s) 93, 332, 573, 591, 779, 956
Tsp45I GTSAC 1 cut(s) 1180
TspDTI ATGAA 3 cut(s) 28, 689, 839
TspGWI ACGGA 1 cut(s) 1257
TspRI CASTG 3 cut(s) 306, 318, 1095
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.