pycom16g13930

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011083
Physical Location & Seq
Forward (+)
9979017 .. 9981338
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGGATGATAGATATTCAGAGCCCAGGGACTTGGATGATTCAGATGATGACGGTGATGATCCATGGAAGCCACTGAATCCCCATGAACCCGGGAACTTGAAAGTGAAACCATTTAGGAAAGTCAAAGCTTCTAAAAGGAAAGGATTCAATTCTACTAAGCATGTCTCTATTATTACACTTTTTCCACCTGCAAAATTGCATGGTACTATTAGTCCAGAGCTCATAGAAATGTGGCAGATTCGATGTCATGCTGAGGAGAGACAAAAGGGATCCCAATCTCCTCCATTATTTGAAAAGCTACGGGAATCCCTTGTTAATGGAAGAGAAGAATCCTTTGATGCCTTTTGCAATCCTCTAGATGGAAATGAGGATACTGAATATGATAATGAGATCCCTGATATTGGGCAACCAGATGCTGACTTGCCAGAATTCATGGATGGTGTACCTGGGCACAGTGATATGAATGAGGACAGTGGTCCTCAATTTGGTAATGTTGAAACATTTGACGACAATCCAAATCCTCATGCAAGCCTGGAAGATTTGTGTCGCTCTCACTTGGACACTCTCCTTGCTAGCATAGCTGAAACCGAGAAACAAACTGAACTAGCTGCTCGTGTTTCAACATGGAAACAGAAAATTGAGTACAACCTGGAAGAGCAAGAATCACACCCTGCTTTTGATATTCATGACTACGGAGAAAGAATTCTTGATAGACTATCCTTCGAACCAGACAATGAGAATGTCTTGTCGTTTGCTGATGTTGTAAAGGGTCAGGAAAAGTATGATGTCGCTCGGAGTTTTTCTGCGCTCCTGCAACTGGTTAACAATGGAGACGTTGAGTTGAATAGGAGTGGGGTTGATGGTGAGTCTGTTTGTTACACAGCCGCAAATCCCTTCCATGTTCGGCTCCTTAGGCATGACAAGAGAAGAGAGCAAACTGGATTTCGGTTGTCCAGAAAGAGAGTTAAGTCTCCCTTGAGGAAAGCATCTCAAAATGTGGACAACAGCAACACAGGGACTGAGAAATCTCCTTCAGTCAAGTCATCTTCTAAGGCACATAAATCAACAGAGACATCTCCTCAAATAAACGGCAAGTTACCTGTGAAAGTTGGAAATGTTGGTGGCAAACGGTGCACTCCTGAAGCAAAGCGGAGAAGAAAGTCTCGATTTGTTGAACCAGTTGACCTACATTCTGCTGAGTGA

Protein Analysis

401

Amino Acids

45.08

Weight (kDa)

5.44

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNDH2_C PF16858 177 - 312 5e-43 Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16730
fragaria_vesca FvH4_4g18640 FvH4_4g18640 FvH4_4g18640
malus_domestica MD13G1164900.v1.1 MD16G1164600.v1.1
prunus_persica Prupe.1G123900_v2.0.a1
pyrus_communis pycom13g14100 pycom16g13930
rosa_chinensis RchiOBHm_Chr4g0423341
rosa_laevigata RLG00000007567
rosa_multiflora Rmu_sc0001290.1_g000016
rosa_roxburghii Rroxscaffold_5G00365530
rosa_rugosa Rorug04G0186700.1 Rorug04G0186800
rosa_samantha Rh4AG245900 Rh4BG251300 Rh4CG259700 Rh4DG246200
rosa_wichuraiana Rw4G021130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 2 cut(s) 885, 1150
AclWI GGATC 4 cut(s) 53, 264, 277, 385
AcsI RAATTY 2 cut(s) 428, 702
AcuI CTGAAG 2 cut(s) 1017, 1161
AfaI GTAC 3 cut(s) 205, 444, 644
AfiI CCNNNNNNNGG 4 cut(s) 359, 401, 485, 817
AgsI TTSAA 7 cut(s) 100, 148, 293, 497, 621, 844, 1175
AjnI CCWGG 4 cut(s) 23, 445, 531, 648
AluBI AGCT 5 cut(s) 128, 220, 298, 581, 608
AluI AGCT 5 cut(s) 128, 220, 298, 581, 608
Alw21I GWGCWC 2 cut(s) 222, 1136
Alw26I GTCTC 6 cut(s) 169, 253, 825, 975, 1064, 1167
Alw44I GTGCAC 1 cut(s) 1132
AlwI GGATC 4 cut(s) 53, 264, 277, 385
AlwNI CAGNNNCTG 2 cut(s) 416, 1019
Ama87I CYCGRG 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 1132
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 428, 702
Asp700I GAANNNNTTC 2 cut(s) 143, 702
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 2 cut(s) 90, 91
AsuHPI GGTGA 2 cut(s) 65, 875
AsuII TTCGAA 1 cut(s) 723
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 476
AxyI CCTNAGG 1 cut(s) 911
BaeGI GKGCMC 2 cut(s) 453, 1136
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 24, 222
BauI CACGAG 1 cut(s) 612
Bbv12I GWGCWC 2 cut(s) 222, 1136
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 353, 431, 854
BceAI ACGGC 1 cut(s) 1105
BciT130I CCWGG 4 cut(s) 25, 447, 533, 650
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 90, 91
BcoDI GTCTC 6 cut(s) 169, 253, 825, 975, 1064, 1167
BfaI CTAG 3 cut(s) 356, 573, 605
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 2 cut(s) 609, 885
BlsI GCNGC 2 cut(s) 610, 886
Bme1390I CCNGG 6 cut(s) 25, 90, 91, 447, 533, 650
Bme18I GGWCC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 271, 908
BmrFI CCNGG 6 cut(s) 25, 90, 91, 447, 533, 650
BmsI GCATC 3 cut(s) 328, 403, 995
BmtI GCTAGC 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 997
BpuMI CCSGG 2 cut(s) 90, 91
BsaBI GATNNNNATC 1 cut(s) 274
BsaJI CCNNGG 5 cut(s) 23, 24, 62, 89, 446
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 401, 485, 817
Bse1I ACTGG 3 cut(s) 822, 943, 1178
Bse21I CCTNAGG 1 cut(s) 911
Bse8I GATNNNNATC 1 cut(s) 274
BseBI CCWGG 4 cut(s) 25, 447, 533, 650
BseDI CCNNGG 5 cut(s) 23, 24, 62, 89, 446
BseGI GGATG 3 cut(s) 10, 40, 442
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 359, 401, 485, 817
BseMII CTCAG 3 cut(s) 243, 1011, 1188
BseNI ACTGG 3 cut(s) 822, 943, 1178
BseRI GAGGAG 3 cut(s) 269, 270, 1068
BseSI GKGCMC 2 cut(s) 453, 1136
BseXI GCAGC 1 cut(s) 595
BsiHKAI GWGCWC 2 cut(s) 222, 1136
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 41, 1030
BslI CCNNNNNNNGG 4 cut(s) 359, 401, 485, 817
BsmAI GTCTC 6 cut(s) 169, 253, 825, 975, 1064, 1167
BsmBI CGTCTC 1 cut(s) 825
BsmFI GGGAC 2 cut(s) 41, 1030
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 723
Bsp1286I GDGCHC 4 cut(s) 24, 222, 453, 1136
Bsp143I GATC 3 cut(s) 58, 269, 390
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 2 cut(s) 885, 1150
BspCNI CTCAG 3 cut(s) 244, 1012, 1189
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 271, 908
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 4 cut(s) 53, 264, 277, 385
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 723
BsrI ACTGG 3 cut(s) 822, 943, 1178
BssECI CCNNGG 5 cut(s) 23, 24, 62, 89, 446
BssMI GATC 3 cut(s) 58, 269, 390
BssSI CACGAG 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 4 cut(s) 25, 447, 533, 650
Bst4CI ACNGT 4 cut(s) 53, 455, 473, 1131
Bst6I CTCTTC 3 cut(s) 316, 648, 922
BstAPI GCANNNNNTGC 1 cut(s) 1131
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 2 cut(s) 529, 574
BstDEI CTNAG 6 cut(s) 156, 252, 911, 1020, 1050, 1197
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 3 cut(s) 10, 40, 442
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 3 cut(s) 61, 272, 393
BstMAI GTCTC 6 cut(s) 169, 253, 825, 975, 1064, 1167
BstMBI GATC 3 cut(s) 58, 269, 390
BstMWI GCNNNNNNNGC 3 cut(s) 578, 913, 1131
BstNI CCWGG 4 cut(s) 25, 447, 533, 650
BstNSI RCATGY 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 6 cut(s) 23, 88, 89, 445, 531, 648
BstSLI GKGCMC 2 cut(s) 453, 1136
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 269, 390
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 2 cut(s) 269, 390
Bsu36I CCTNAGG 1 cut(s) 911
BsuI GTATCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 3 cut(s) 10, 40, 442
BtsIMutI CAGTG 3 cut(s) 71, 460, 478
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 529, 574
CaiI CAGNNNCTG 2 cut(s) 416, 1019
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 808
Cfr13I GGNCC 1 cut(s) 476
Cfr9I CCCGGG 1 cut(s) 89
Csp6I GTAC 3 cut(s) 204, 443, 643
CviQI GTAC 3 cut(s) 204, 443, 643
DdeI CTNAG 6 cut(s) 156, 252, 911, 1020, 1050, 1197
DpnI GATC 3 cut(s) 60, 271, 392
DpnII GATC 3 cut(s) 58, 269, 390
Eam1104I CTCTTC 3 cut(s) 316, 648, 922
EarI CTCTTC 3 cut(s) 316, 648, 922
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 2 cut(s) 24, 222
Eco47I GGWCC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 1017, 1161
Eco81I CCTNAGG 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 428, 702
EcoRII CCWGG 4 cut(s) 23, 445, 531, 648
EcoT14I CCWWGG 1 cut(s) 62
EcoT38I GRGCYC 2 cut(s) 24, 222
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 825
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FaqI GGGAC 2 cut(s) 41, 1030
Fnu4HI GCNGC 2 cut(s) 609, 885
FokI GGATG 3 cut(s) 17, 47, 449
FriOI GRGCYC 2 cut(s) 24, 222
Fsp4HI GCNGC 2 cut(s) 609, 885
FspBI CTAG 3 cut(s) 356, 573, 605
GlaI GCGC 1 cut(s) 807
GluI GCNGC 2 cut(s) 609, 885
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 808
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HincII GTYRAC 2 cut(s) 823, 1183
HindII GTYRAC 2 cut(s) 823, 1183
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 8 cut(s) 38, 76, 144, 238, 305, 329, 662, 866
HpaI GTTAAC 1 cut(s) 823
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 65, 875
Hpy166II GTNNAC 5 cut(s) 443, 823, 1000, 1134, 1183
Hpy188I TCNGA 3 cut(s) 19, 43, 795
Hpy188III TCNNGA 8 cut(s) 215, 356, 686, 707, 773, 954, 1139, 1164
Hpy8I GTNNAC 5 cut(s) 443, 823, 1000, 1134, 1183
HpyAV CCTTC 3 cut(s) 730, 904, 1041
HpyCH4III ACNGT 4 cut(s) 53, 455, 473, 1131
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 6 cut(s) 191, 199, 348, 527, 814, 1134
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 913, 1131
HpyF3I CTNAG 6 cut(s) 156, 252, 911, 1020, 1050, 1197
HpySE526I ACGT 1 cut(s) 834
HspAI GCGC 1 cut(s) 806
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 3 cut(s) 58, 269, 390
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 813, 912
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 3 cut(s) 328, 403, 995
MaeI CTAG 3 cut(s) 356, 573, 605
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 2 cut(s) 875, 1095
MalI GATC 3 cut(s) 60, 271, 392
MboI GATC 3 cut(s) 58, 269, 390
MboII GAAGA 7 cut(s) 333, 338, 548, 665, 939, 1038, 1167
MflI RGATCY 2 cut(s) 269, 390
MhlI GDGCHC 4 cut(s) 24, 222, 453, 1136
MluCI AATT 6 cut(s) 148, 194, 428, 482, 636, 702
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 1090
MnlI CCTC 9 cut(s) 247, 291, 361, 363, 460, 489, 531, 972, 1089
MroXI GAANNNNTTC 2 cut(s) 143, 702
MseI TTAA 3 cut(s) 315, 822, 966
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 6 cut(s) 25, 90, 91, 447, 533, 650
MvaI CCWGG 4 cut(s) 25, 447, 533, 650
MwoI GCNNNNNNNGC 3 cut(s) 578, 913, 1131
NciI CCSGG 2 cut(s) 90, 91
NcoI CCATGG 1 cut(s) 62
NdeII GATC 3 cut(s) 58, 269, 390
NheI GCTAGC 1 cut(s) 572
NlaIV GGNNCC 2 cut(s) 271, 908
NspI RCATGY 1 cut(s) 164
NspV TTCGAA 1 cut(s) 723
PagI TCATGA 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 196
PasI CCCWGGG 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 648
PdmI GAANNNNTTC 2 cut(s) 143, 702
PfeI GAWTC 7 cut(s) 38, 76, 144, 238, 305, 329, 662
PkrI GCNGC 2 cut(s) 610, 886
PleI GAGTC 1 cut(s) 874
PpsI GAGTC 1 cut(s) 874
PshAI GACNNNNGTC 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 23, 445, 531, 648
PspGI CCWGG 4 cut(s) 23, 445, 531, 648
PspN4I GGNNCC 2 cut(s) 271, 908
PspPI GGNCC 1 cut(s) 476
PstNI CAGNNNCTG 2 cut(s) 416, 1019
PsuI RGATCY 2 cut(s) 269, 390
RsaI GTAC 3 cut(s) 205, 444, 644
RsaNI GTAC 3 cut(s) 204, 443, 643
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 315, 822, 966
SatI GCNGC 2 cut(s) 609, 885
Sau3AI GATC 3 cut(s) 58, 269, 390
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 6 cut(s) 25, 90, 91, 447, 533, 650
SduI GDGCHC 4 cut(s) 24, 222, 453, 1136
SfaNI GCATC 3 cut(s) 328, 403, 995
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 1 cut(s) 476
SmaI CCCGGG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 976
SmoI CTYRAG 1 cut(s) 976
Sse9I AATT 6 cut(s) 148, 194, 428, 482, 636, 702
SsiI CCGC 2 cut(s) 885, 1150
SspMI CTAG 3 cut(s) 356, 573, 605
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 6 cut(s) 23, 88, 89, 445, 531, 648
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 4 cut(s) 53, 455, 473, 1131
TaiI ACGT 1 cut(s) 837
TaqI TCGA 3 cut(s) 241, 723, 1165
TasI AATT 6 cut(s) 148, 194, 428, 482, 636, 702
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 887
TfiI GAWTC 7 cut(s) 38, 76, 144, 238, 305, 329, 662
Tru1I TTAA 3 cut(s) 315, 822, 966
Tru9I TTAA 3 cut(s) 315, 822, 966
TscAI CASTG 3 cut(s) 78, 460, 478
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 4 cut(s) 99, 421, 476, 674
TspGWI ACGGA 1 cut(s) 708
TspMI CCCGGG 1 cut(s) 89
TspRI CASTG 3 cut(s) 78, 460, 478
VneI GTGCAC 1 cut(s) 1132
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 2 cut(s) 428, 702
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 143, 702
XspI CTAG 3 cut(s) 356, 573, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.