Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011083

Physical Location & Seq

Genomic Coordinates Reverse (-)

51408438 .. 51412736

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG259700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGACTAACGCCAGAGCGGAGCCAAGCGGCAGTGGCGGCGGCGCCGGAGGTGGGTTCCACACGGTGCAGGCGGAGCGTGACCTAGAATCCAATTGGGAACTAGATCTTGGAACAAAACTCGAAGAATATTTGCTGAGGATTTGCTCCGGCGAATTGCCCGCCGAAGCCGACGGCATTGTGTCTATTAATTTCGCCGAAGGTTGCCACACAGAGCAGAATGACCAATCAGACGGCACATCAGTTCAACCTGAAGAAGGTGGGAGTTCCAATGCAGTTGCTGACGAAGAAAATGATAGGTTTTGGGGATTAGATGACATTGCAGTGGAAGCAAAAAATTGCTTAGACAGTCCTTCAGGCAGAGATGTTCCTTCGAATCCCTTTGTGAAGCCCCCAGCAAATCTAGTTGTCCTTGAAGGTGATTGCTTAGATACAACTGGTGATTCCGGAGAACTAGAGTCATATCTGTTGGCCACAAATGATCTTTACCAGGATTTCATTTTGTTAGATCCATGTGATTCAGTAGCAGTTAATGATTATTTGGGTGTGGATGGAGTTAGTAGAGGACAAAATAGTGCTTATAGGGTCAGCTCAACTCGAAAAAGCTTTCTGTCTCCCACAGGACGTTCAGGAGGGACTGCACATAAGTCACAAAAGTCCCAGAATGCTAATGTCAATCAGTCTCCTATGGTTGAATCTCACTTTGAGGTCAATGGTTGTAATATTGGGCCTGATCCTCCTGGCTGCAATAATTTTGATGACGGCACTCATGGGTATGATATGGATGATAGATACTCGGAGCCTAGGGACTTGGATGAATTGGATGATGACGACGATGATCCATGGAAGCCTTTGAATCCACATGAACCTGGGAATTTGAAAGTAAAGCCTTTTAAAAAAGTCAAAGCTTTTAAAAGGAAAGGTGTTAATTCTTCTAAGCAGGCATCTATGGCAACAATGTTTCCACCTGCAAAATTGCATGGTACTATTAGTCCAGAACTCACAGAAATGTGGGAGATACGACGTCATGCTCAAGAACAGCAAAGGGGGTCCCAATCTCCTCCATTATTTGAGAAGCTGCGACAATCACTTATTGATGGAAAACATGAAAATTTTGATGGCTCTTCTAATCCTATGAATGGAAATGACGACGCCGAATATGATAATGACATCCCGGGTTTTGAGCAACCAGATGCTGACATACCAGAAGATGTACCTCTTCACAATGATGAGCACGAGGATGGTGGTCCTCACTTTGGCACTGATGAAGCTTTTGGATATGAGGATCCAAACCCTCATGCAAGCTTGGAAGATTTATGCCGTTCTCACCTAGATGCTCTACTTGCTAGCATAGCTGAAAACGAGAAGCAAACTGAACTGGCTGCTCGTGTTTCAACATGGAAACAGAAAATTGAGCACAACTTGGAAGAGCAAGAATCACACCCTCCTTTTGACATTCAAGACTATGGTGAAAGAATTCTTGATAGACTATCCCTTGAACCAGAAGATAGAAATGTATTGCCCTTTTCTGATGTCGTCAAAGGTCAGGGAAAGTATGATGTGGCCAGGAGCTTTTCTGCACTACTGCAACTGGTAAACAATGGAAATGTTGAGTTGGATAGGAGTGTAGTTGATGGTGGTCAGCCTGTTTGTTTCACAGCTGCCAATCCTTTCCATGTTCGGCTCCTAAGACATGACAGAAGAAGAGTGGAAACTGGATTTCGGCTGTCGAGAAAGAGAGTTAAGTCTCCATTGAGGAAAGCATGTAGAAAAGTCGACAACGACAAGAATGGAATTGAGAAATCACCCTTCGTCAAGTCATCATCAAAGACAAGTAAATCAAAAAGAAGATCTACTCCAACAAACTGCAAGTTGTCAGCCGGAAAGAATGGCGTCACAGGGCGCAGTCCTGATGCCAAGAGGAGAAAAAGTACTCGATTTGTTGAACCACTTGATGACCTACATTCTCCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006282 GO:0008150 GO:0009893 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045739 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0080135 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CNDH2_C CNDH2_M CNDH2_N

Protein Analysis

657

Amino Acids

72.39

Weight (kDa)

4.92

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNDH2_N	PF06278	20 - 67	8.8e-10	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
CNDH2_M	PF16869	129 - 277	3.8e-26	Condensin II complex subunit CAP-H2 or CNDH2, mid domain
CNDH2_C	PF16858	434 - 568	1.5e-38	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16730
fragaria_vesca	FvH4_4g18640 FvH4_4g18640 FvH4_4g18640
malus_domestica	MD13G1164900.v1.1 MD16G1164600.v1.1
prunus_persica	Prupe.1G123900_v2.0.a1
pyrus_communis	pycom13g14100 pycom16g13930
rosa_chinensis	RchiOBHm_Chr4g0423341
rosa_laevigata	RLG00000007567
rosa_multiflora	Rmu_sc0001290.1_g000016
rosa_roxburghii	Rroxscaffold_5G00365530
rosa_rugosa	Rorug04G0186700.1 Rorug04G0186800
rosa_samantha	Rh4AG245900 Rh4BG251300 Rh4CG259700 Rh4DG246200
rosa_wichuraiana	Rw4G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
AatII	GACGTC	1 cut(s)	1024
Acc36I	ACCTGC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	1773
AccIII	TCCGGA	1 cut(s)	443
AciI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
AclWI	GGATC	5 cut(s)	500, 725, 830, 1277, 1290
AcoI	YGGCCR	2 cut(s)	468, 1560
AcsI	RAATTY	3 cut(s)	871, 1108, 1473
AcuI	CTGAAG	2 cut(s)	270, 336
AcyI	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	3 cut(s)	982, 1212, 1930
AfiI	CCNNNNNNNGG	4 cut(s)	51, 254, 1136, 1253
AgsI	TTSAA	9 cut(s)	245, 413, 692, 853, 877, 1392, 1457, 1496, 1943
AjnI	CCWGG	5 cut(s)	486, 736, 865, 1562, 1966
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	9 cut(s)	588, 603, 905, 1075, 1268, 1302, 1352, 1569, 1658
AluI	AGCT	9 cut(s)	588, 603, 905, 1075, 1268, 1302, 1352, 1569, 1658
Alw21I	GWGCWC	2 cut(s)	1233, 1416
Alw26I	GTCTC	3 cut(s)	615, 684, 1749
AlwI	GGATC	5 cut(s)	500, 725, 830, 1277, 1290
AlwNI	CAGNNNCTG	2 cut(s)	278, 1193
Ama87I	CYCGRG	1 cut(s)	1171
Aor13HI	TCCGGA	1 cut(s)	443
AoxI	GGCC	3 cut(s)	468, 725, 1560
ApeKI	GCWGC	4 cut(s)	741, 1075, 1379, 1658
ApoI	RAATTY	3 cut(s)	871, 1108, 1473
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	1473
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	2 cut(s)	44, 1902
AspS9I	GGNCC	3 cut(s)	725, 1047, 1244
AsuC2I	CCSGG	2 cut(s)	1172, 1173
AsuHPI	GGTGA	5 cut(s)	428, 449, 1316, 1478, 1794
AsuII	TTCGAA	1 cut(s)	371
AsuNHI	GCTAGC	1 cut(s)	1343
AvaI	CYCGRG	1 cut(s)	1171
AvaII	GGWCC	2 cut(s)	1047, 1244
AvrII	CCTAGG	1 cut(s)	800
BalI	TGGCCA	2 cut(s)	470, 1562
BamHI	GGATCC	1 cut(s)	1282
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	2 cut(s)	1232, 1383
Bbv12I	GWGCWC	2 cut(s)	1233, 1416
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	728, 1062, 1366, 1645
BccI	CCATC	5 cut(s)	542, 1088, 1109, 1232, 1625
BceAI	ACGGC	4 cut(s)	187, 247, 775, 1302
BciT130I	CCWGG	5 cut(s)	488, 738, 867, 1564, 1968
BcnI	CCSGG	2 cut(s)	1172, 1173
BcoDI	GTCTC	3 cut(s)	615, 684, 1749
BfaI	CTAG	7 cut(s)	83, 101, 401, 452, 801, 1328, 1344
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	973
BglII	AGATCT	2 cut(s)	103, 1847
BisI	GCNGC	7 cut(s)	28, 37, 40, 742, 1076, 1380, 1659
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	7 cut(s)	29, 38, 41, 743, 1077, 1381, 1660
BmcAI	AGTACT	1 cut(s)	1930
Bme1390I	CCNGG	7 cut(s)	488, 738, 867, 1172, 1173, 1564, 1968
Bme18I	GGWCC	2 cut(s)	1047, 1244
BmeT110I	CYCGRG	1 cut(s)	1171
BmgT120I	GGNCC	3 cut(s)	725, 1047, 1244
BmiI	GGNNCC	8 cut(s)	21, 43, 56, 798, 1048, 1049, 1284, 1682
BmrFI	CCNGG	7 cut(s)	488, 738, 867, 1172, 1173, 1564, 1968
BmsI	GCATC	4 cut(s)	950, 1180, 1321, 1900
BmtI	GCTAGC	1 cut(s)	1347
BpmI	CTGGAG	1 cut(s)	1950
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	1014
BpuMI	CCSGG	2 cut(s)	1172, 1173
BsaHI	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
BsaJI	CCNNGG	5 cut(s)	800, 839, 866, 1171, 1967
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	1912, 1942
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 254, 1136, 1253
Bse1I	ACTGG	4 cut(s)	439, 1380, 1593, 1717
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	443
BseBI	CCWGG	5 cut(s)	488, 738, 867, 1564, 1968
BseDI	CCNNGG	5 cut(s)	800, 839, 866, 1171, 1967
BseGI	GGATG	6 cut(s)	553, 787, 817, 826, 1167, 1243
BseLI	CCNNNNNNNGG	4 cut(s)	51, 254, 1136, 1253
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	4 cut(s)	439, 1380, 1593, 1717
BseRI	GAGGAG	2 cut(s)	1047, 1933
BseXI	GCAGC	4 cut(s)	728, 1062, 1366, 1645
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	3 cut(s)	86, 621, 1560
BshFI	GGCC	3 cut(s)	470, 727, 1562
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	2 cut(s)	1233, 1416
BsiHKCI	CYCGRG	1 cut(s)	1171
BsiSI	CCGG	5 cut(s)	45, 147, 444, 1172, 1878
BslFI	GGGAC	4 cut(s)	640, 646, 818, 1033
BslI	CCNNNNNNNGG	4 cut(s)	51, 254, 1136, 1253
BsmAI	GTCTC	3 cut(s)	615, 684, 1749
BsmFI	GGGAC	4 cut(s)	640, 646, 818, 1033
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	470, 727, 1562
BsoBI	CYCGRG	1 cut(s)	1171
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	1233, 1416
Bsp13I	TCCGGA	1 cut(s)	443
Bsp143I	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
Bsp19I	CCATGG	1 cut(s)	839
BspACI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
BspANI	GGCC	3 cut(s)	470, 727, 1562
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	443
BspLI	GGNNCC	8 cut(s)	21, 43, 56, 798, 1048, 1049, 1284, 1682
BspMI	ACCTGC	1 cut(s)	973
BspOI	GCTAGC	1 cut(s)	1347
BspPI	GGATC	5 cut(s)	500, 725, 830, 1277, 1290
BspQI	GCTCTTC	2 cut(s)	1126, 1419
BspT104I	TTCGAA	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	439, 1380, 1593, 1717
BssECI	CCNNGG	5 cut(s)	800, 839, 866, 1171, 1967
BssMI	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
BssNI	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
BssSI	CACGAG	2 cut(s)	1232, 1383
BssT1I	CCWWGG	2 cut(s)	800, 839
Bst2BI	CACGAG	2 cut(s)	1232, 1383
Bst2UI	CCWGG	5 cut(s)	488, 738, 867, 1564, 1968
Bst4CI	ACNGT	2 cut(s)	64, 347
Bst6I	CTCTTC	4 cut(s)	1126, 1221, 1419, 1696
BstACI	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	5 cut(s)	69, 159, 939, 1300, 1345
BstDEI	CTNAG	5 cut(s)	134, 340, 424, 933, 1685
BstDSI	CCRYGG	1 cut(s)	839
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	6 cut(s)	553, 787, 817, 826, 1167, 1243
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 1902
BstKTI	GATC	7 cut(s)	106, 481, 508, 733, 838, 1285, 1850
BstMAI	GTCTC	3 cut(s)	615, 684, 1749
BstMBI	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 36, 73, 326, 947, 1340, 1349
BstNI	CCWGG	5 cut(s)	488, 738, 867, 1564, 1968
BstNSI	RCATGY	1 cut(s)	1764
BstSCI	CCNGG	7 cut(s)	486, 736, 865, 1170, 1171, 1562, 1966
BstV1I	GCAGC	4 cut(s)	728, 1062, 1366, 1645
BstX2I	RGATCY	4 cut(s)	103, 505, 1282, 1847
BstYI	RGATCY	4 cut(s)	103, 505, 1282, 1847
BsuRI	GGCC	3 cut(s)	470, 727, 1562
BtgI	CCRYGG	1 cut(s)	839
BtsCI	GGATG	6 cut(s)	553, 787, 817, 826, 1167, 1243
BtsI	GCAGTG	2 cut(s)	37, 327
BtsIMutI	CAGTG	3 cut(s)	37, 327, 1257
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	5 cut(s)	69, 159, 939, 1300, 1345
CaiI	CAGNNNCTG	2 cut(s)	278, 1193
CfoI	GCGC	2 cut(s)	44, 1902
Cfr13I	GGNCC	3 cut(s)	725, 1047, 1244
Cfr9I	CCCGGG	1 cut(s)	1171
CseI	GACGC	2 cut(s)	1157, 1879
Csp6I	GTAC	3 cut(s)	981, 1211, 1929
CviQI	GTAC	3 cut(s)	981, 1211, 1929
DdeI	CTNAG	5 cut(s)	134, 340, 424, 933, 1685
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	7 cut(s)	105, 480, 507, 732, 837, 1284, 1849
DpnII	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
DraI	TTTAAA	2 cut(s)	892, 910
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	468, 1560
Eam1104I	CTCTTC	4 cut(s)	1126, 1221, 1419, 1696
EarI	CTCTTC	4 cut(s)	1126, 1221, 1419, 1696
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	800, 839
Eco47I	GGWCC	2 cut(s)	1047, 1244
Eco57I	CTGAAG	2 cut(s)	270, 336
Eco88I	CYCGRG	1 cut(s)	1171
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	1047
EcoRI	GAATTC	1 cut(s)	1473
EcoRII	CCWGG	5 cut(s)	486, 736, 865, 1562, 1966
EcoT14I	CCWWGG	2 cut(s)	800, 839
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	800, 839
FaqI	GGGAC	4 cut(s)	640, 646, 818, 1033
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	1773
Fnu4HI	GCNGC	7 cut(s)	28, 37, 40, 742, 1076, 1380, 1659
FokI	GGATG	6 cut(s)	560, 794, 824, 833, 1154, 1250
Fsp4HI	GCNGC	7 cut(s)	28, 37, 40, 742, 1076, 1380, 1659
FspBI	CTAG	7 cut(s)	83, 101, 401, 452, 801, 1328, 1344
GlaI	GCGC	2 cut(s)	43, 1901
GluI	GCNGC	7 cut(s)	28, 37, 40, 742, 1076, 1380, 1659
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	1950
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	470, 727, 1562
HapII	CCGG	5 cut(s)	45, 147, 444, 1172, 1878
HgaI	GACGC	2 cut(s)	1157, 1879
HhaI	GCGC	2 cut(s)	44, 1902
Hin1I	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
Hin6I	GCGC	2 cut(s)	42, 1900
HinP1I	GCGC	2 cut(s)	42, 1900
HincII	GTYRAC	1 cut(s)	1774
HindII	GTYRAC	1 cut(s)	1774
HindIII	AAGCTT	4 cut(s)	601, 903, 1266, 1300
HinfI	GANTC	8 cut(s)	86, 373, 440, 455, 515, 692, 853, 1433
HpaII	CCGG	5 cut(s)	45, 147, 444, 1172, 1878
HphI	GGTGA	5 cut(s)	428, 449, 1316, 1478, 1794
Hpy166II	GTNNAC	2 cut(s)	1594, 1774
Hpy188I	TCNGA	3 cut(s)	229, 796, 1528
Hpy188III	TCNNGA	8 cut(s)	444, 627, 992, 1031, 1457, 1478, 1728, 1907
Hpy8I	GTNNAC	2 cut(s)	1594, 1774
Hpy99I	CGWCG	4 cut(s)	173, 833, 1023, 1151
HpyAV	CCTTC	6 cut(s)	191, 248, 360, 378, 407, 1816
HpyCH4III	ACNGT	2 cut(s)	64, 347
HpyCH4IV	ACGT	2 cut(s)	622, 1021
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 36, 73, 326, 947, 1340, 1349
HpyF3I	CTNAG	5 cut(s)	134, 340, 424, 933, 1685
HpySE526I	ACGT	2 cut(s)	622, 1021
Hsp92I	GRCGYC	4 cut(s)	42, 1021, 1149, 1890
HspAI	GCGC	2 cut(s)	42, 1900
KasI	GGCGCC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	1047
Kpn2I	TCCGGA	1 cut(s)	443
Kzo9I	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
LguI	GCTCTTC	2 cut(s)	1126, 1419
LmnI	GCTCC	6 cut(s)	19, 73, 149, 796, 1566, 1686
Lsp1109I	GCAGC	4 cut(s)	728, 1062, 1366, 1645
LweI	GCATC	4 cut(s)	950, 1180, 1321, 1900
MaeI	CTAG	7 cut(s)	83, 101, 401, 452, 801, 1328, 1344
MaeII	ACGT	2 cut(s)	622, 1021
MaeIII	GTNAC	3 cut(s)	77, 645, 1891
MalI	GATC	7 cut(s)	105, 480, 507, 732, 837, 1284, 1849
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	4 cut(s)	103, 505, 1282, 1847
MhlI	GDGCHC	2 cut(s)	1233, 1416
MlsI	TGGCCA	2 cut(s)	470, 1562
MluNI	TGGCCA	2 cut(s)	470, 1562
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	1593, 1880
Mox20I	TGGCCA	2 cut(s)	470, 1562
MroI	TCCGGA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	1473
MscI	TGGCCA	2 cut(s)	470, 1562
MseI	TTAA	6 cut(s)	186, 528, 891, 909, 924, 1740
MslI	CAYNNNNRTG	6 cut(s)	320, 771, 1004, 1224, 1236, 1329
Msp20I	TGGCCA	2 cut(s)	470, 1562
MspA1I	CMGCKG	1 cut(s)	1658
MspI	CCGG	5 cut(s)	45, 147, 444, 1172, 1878
MspR9I	CCNGG	7 cut(s)	488, 738, 867, 1172, 1173, 1564, 1968
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	5 cut(s)	488, 738, 867, 1564, 1968
MwoI	GCNNNNNNNGC	7 cut(s)	33, 36, 73, 326, 947, 1340, 1349
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	1172, 1173
NcoI	CCATGG	1 cut(s)	839
NdeII	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
NheI	GCTAGC	1 cut(s)	1343
NlaIV	GGNNCC	8 cut(s)	21, 43, 56, 798, 1048, 1049, 1284, 1682
NmuCI	GTSAC	3 cut(s)	77, 645, 1891
NspI	RCATGY	1 cut(s)	1764
NspV	TTCGAA	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	973
PciSI	GCTCTTC	2 cut(s)	1126, 1419
PctI	GAATGC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	1473
PfeI	GAWTC	7 cut(s)	86, 373, 440, 515, 692, 853, 1433
PkrI	GCNGC	7 cut(s)	29, 38, 41, 743, 1077, 1381, 1660
PleI	GAGTC	1 cut(s)	463
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	1047
PshBI	ATTAAT	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	1047
Psp6I	CCWGG	5 cut(s)	486, 736, 865, 1562, 1966
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	5 cut(s)	486, 736, 865, 1562, 1966
PspN4I	GGNNCC	8 cut(s)	21, 43, 56, 798, 1048, 1049, 1284, 1682
PspPI	GGNCC	3 cut(s)	725, 1047, 1244
PspPPI	RGGWCCY	1 cut(s)	1047
PstNI	CAGNNNCTG	2 cut(s)	278, 1193
PsuI	RGATCY	4 cut(s)	103, 505, 1282, 1847
PvuII	CAGCTG	1 cut(s)	1658
RsaI	GTAC	3 cut(s)	982, 1212, 1930
RsaNI	GTAC	3 cut(s)	981, 1211, 1929
RseI	CAYNNNNRTG	6 cut(s)	320, 771, 1004, 1224, 1236, 1329
SalI	GTCGAC	1 cut(s)	1772
SapI	GCTCTTC	2 cut(s)	1126, 1419
SaqAI	TTAA	6 cut(s)	186, 528, 891, 909, 924, 1740
SatI	GCNGC	7 cut(s)	28, 37, 40, 742, 1076, 1380, 1659
Sau3AI	GATC	7 cut(s)	103, 478, 505, 730, 835, 1282, 1847
Sau96I	GGNCC	3 cut(s)	725, 1047, 1244
ScaI	AGTACT	1 cut(s)	1930
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	7 cut(s)	488, 738, 867, 1172, 1173, 1564, 1968
SduI	GDGCHC	2 cut(s)	1233, 1416
SfaNI	GCATC	4 cut(s)	950, 1180, 1321, 1900
SfoI	GGCGCC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	371
SinI	GGWCC	2 cut(s)	1047, 1244
SmaI	CCCGGG	1 cut(s)	1173
SmiMI	CAYNNNNRTG	6 cut(s)	320, 771, 1004, 1224, 1236, 1329
SmlI	CTYRAG	1 cut(s)	1029
SmoI	CTYRAG	1 cut(s)	1029
SsiI	CCGC	6 cut(s)	17, 27, 36, 39, 71, 159
SspDI	GGCGCC	1 cut(s)	41
SspI	AATATT	2 cut(s)	128, 721
SspMI	CTAG	7 cut(s)	83, 101, 401, 452, 801, 1328, 1344
StyD4I	CCNGG	7 cut(s)	486, 736, 865, 1170, 1171, 1562, 1966
StyI	CCWWGG	2 cut(s)	800, 839
TaaI	ACNGT	2 cut(s)	64, 347
TaiI	ACGT	2 cut(s)	625, 1024
TaqI	TCGA	6 cut(s)	120, 371, 595, 1727, 1773, 1933
TatI	WGTACW	1 cut(s)	1928
TauI	GCSGC	3 cut(s)	30, 39, 42
TfiI	GAWTC	7 cut(s)	86, 373, 440, 515, 692, 853, 1433
Tru1I	TTAA	6 cut(s)	186, 528, 891, 909, 924, 1740
Tru9I	TTAA	6 cut(s)	186, 528, 891, 909, 924, 1740
TscAI	CASTG	3 cut(s)	37, 327, 1264
TseFI	GTSAC	3 cut(s)	77, 645, 1891
TseI	GCWGC	4 cut(s)	741, 1075, 1379, 1658
Tsp45I	GTSAC	3 cut(s)	77, 645, 1891
TspDTI	ATGAA	6 cut(s)	484, 828, 876, 1119, 1148, 1278
TspMI	CCCGGG	1 cut(s)	1171
TspRI	CASTG	3 cut(s)	37, 327, 1264
VpaK11BI	GGWCC	2 cut(s)	1047, 1244
VspI	ATTAAT	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	252
XapI	RAATTY	3 cut(s)	871, 1108, 1473
XceI	RCATGY	1 cut(s)	1764
XmaI	CCCGGG	1 cut(s)	1171
XmaJI	CCTAGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	1773
XmnI	GAANNNNTTC	1 cut(s)	1473
XspI	CTAG	7 cut(s)	83, 101, 401, 452, 801, 1328, 1344
ZraI	GACGTC	1 cut(s)	1022
ZrmI	AGTACT	1 cut(s)	1930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.