Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0018939

Physical Location & Seq

Genomic Coordinates Forward (+)

11870357 .. 11871839

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTGAAATAACAAATAATTTGAAACTTTTGCCTCTTATCATGCTTGTTCTTCTTATTTCAAAGGCTGTTGGTGATGCTTTCAACGAAGGCCTGTACGAAGAACAGGCGCGATTAAAGAGCATTCCATTACTGGAATCAAGACCCAAGTACCAAGTGAGGAAGATGACTGCAAAGGAGGCCTCTGGAAAAAGGGCGATTTCCTTCCCTCGTGTTGTTAAGGTTGCTGATTTGGTTTCTATTTTGCGGAGCAACAATCATAATGGCTTCCCTGTGATTGATCATGCAAGAAGTGGAGAAACACTTGTAATTGGACTAATGCTTCGCAGTCACTTGTTGGTACTTCTGCAGTCCAAAGTGGATTTCCAGCATAGTCCTCTACCCTGTGATCCAAGAGGAGCCAGGTCTATCAGGCACACTATCAGTGAATTCGTAAAACCTGCTTCCAGTAAAGGCTTATCGATAAGTGATATACATCTGAGTTCAGATGACTTGGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

9.51

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018939)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g15950
rosa_chinensis	RchiOBHm_Chr1g0360351
rosa_multiflora	Rmu_sc0003207.1_g000043 Rmu_sc0010454.1_g000010
rosa_roxburghii	Rroxscaffold_3G00244910 Rroxscaffold_4G00299310 Rroxscaffold_6G00427710
rosa_samantha	Rh2CG333200
rosa_wichuraiana	Rw5G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AccII	CGCG	1 cut(s)	112
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	3 cut(s)	98, 152, 342
AgsI	TTSAA	4 cut(s)	8, 25, 63, 85
AjnI	CCWGG	1 cut(s)	401
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	91, 180
ApoI	RAATTY	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	134, 167
BauI	CACGAG	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	138, 447
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	2 cut(s)	138, 447
BseRI	GAGGAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	93, 182
BshVI	ATCGAT	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	93, 182
Bsp143I	GATC	2 cut(s)	280, 388
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	93, 182
BspCNI	CTCAG	1 cut(s)	471
BspDI	ATCGAT	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	138, 447
BssMI	GATC	2 cut(s)	280, 388
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	479
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	283, 391
BstMBI	GATC	2 cut(s)	280, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	347
BstUI	CGCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	93, 182
BsuTUI	ATCGAT	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	97, 151, 341
CviAII	CATG	2 cut(s)	43, 284
CviJI	RGCY	6 cut(s)	68, 93, 182, 267, 401, 456
CviKI_1	RGCY	6 cut(s)	68, 93, 182, 267, 401, 456
CviQI	GTAC	3 cut(s)	97, 151, 341
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	2 cut(s)	282, 390
DpnII	GATC	2 cut(s)	280, 388
Eco147I	AGGCCT	2 cut(s)	93, 182
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	46, 287
FaiI	YATR	5 cut(s)	44, 261, 285, 372, 473
FatI	CATG	2 cut(s)	42, 283
FbaI	TGATCA	1 cut(s)	280
GlaI	GCGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	93, 182
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	46, 287
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	480, 487
Hpy188III	TCNNGA	2 cut(s)	141, 186
HpyAV	CCTTC	2 cut(s)	83, 214
HpyCH4V	TGCA	3 cut(s)	173, 287, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	479
Hsp92II	CATG	2 cut(s)	46, 287
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	280, 388
LmnI	GCTCC	2 cut(s)	249, 398
LweI	GCATC	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	282, 390
MboI	GATC	2 cut(s)	280, 388
MboII	GAAGA	3 cut(s)	44, 113, 175
MluCI	AATT	3 cut(s)	19, 309, 428
MnlI	CCTC	7 cut(s)	45, 153, 172, 193, 219, 387, 389
MseI	TTAA	2 cut(s)	116, 219
MspR9I	CCNGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	403
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	280, 388
NlaIII	CATG	2 cut(s)	46, 287
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	329
PceI	AGGCCT	2 cut(s)	93, 182
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	3 cut(s)	98, 152, 342
RsaNI	GTAC	3 cut(s)	97, 151, 341
SaqAI	TTAA	2 cut(s)	116, 219
Sau3AI	GATC	2 cut(s)	280, 388
ScrFI	CCNGG	1 cut(s)	403
SetI	ASST	3 cut(s)	225, 407, 442
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	19, 309, 428
SseBI	AGGCCT	2 cut(s)	93, 182
SsiI	CCGC	1 cut(s)	247
StuI	AGGCCT	2 cut(s)	93, 182
StyD4I	CCNGG	1 cut(s)	401
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	19, 309, 428
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	116, 219
Tru9I	TTAA	2 cut(s)	116, 219
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.