Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003207.1

Orthogroup ID

OG0018939

Physical Location & Seq

Genomic Coordinates Forward (+)

170940 .. 173810

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003207.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggaaggctggtgtaatggtggtgctgagaagaaccaagctaggaagaagaaagagagtgatgatgcgatcatgaatttgtttagtgcaaaaacaatacatgagtacagtgcccaaagtttattgaccttcttggttatgttttacacattagcagttgtgacatttggtactgctgttccagctggtcaatttgttcctggaataatgataggatcaacatatggacgtcttgtaggcatgtttgttgttagtttctacaagaagctcaacatggaagagggaacatatgcactacttggagcagcttcttttcttggaggttcaatgcaaatgacggtgtctctatgtgtcattatggttgaaatcacaaataatctgaaattgttgcctcttatcatgcttgttcttcttatttcaaaggttgttggagatgcattcaacgaaggcctgtatgaagaacagtcgcggttaaggaacattccacagttagaatcaaaacccaaatatcaaatgcggaagatgacagcaaaggaggcttgtggaaaaagggtgattgatcattctagaaacggagaaacacttgtcattggactaatgcttcgtagtcacttgttggtacttctgcagtcgaaggtagatttccacaaggatgtgaaggtagcaaatgtacttcttgatgactactgtgaagccgtcagagatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

236

Amino Acids

26.28

Weight (kDa)

8.58

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018939)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g15950
rosa_chinensis	RchiOBHm_Chr1g0360351
rosa_multiflora	Rmu_sc0003207.1_g000043 Rmu_sc0010454.1_g000010
rosa_roxburghii	Rroxscaffold_3G00244910 Rroxscaffold_4G00299310 Rroxscaffold_6G00427710
rosa_samantha	Rh2CG333200
rosa_wichuraiana	Rw5G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	232
AccII	CGCG	1 cut(s)	469
AciI	CCGC	2 cut(s)	469, 517
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	4 cut(s)	107, 172, 621, 672
AgsI	TTSAA	4 cut(s)	327, 365, 420, 442
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	4 cut(s)	41, 185, 268, 308
AluI	AGCT	4 cut(s)	41, 185, 268, 308
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AsuHPI	GGTGA	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	115
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BbvI	GCAGC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	42, 567
BfmI	CTRYAG	1 cut(s)	626
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	55, 424
BsaHI	GRCGYC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	69, 215, 559
BspACI	CCGC	2 cut(s)	469, 517
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	223
BssMI	GATC	3 cut(s)	69, 215, 559
BssNI	GRCGYC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	5 cut(s)	110, 340, 465, 489, 689
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	72, 218, 562
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	69, 215, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 536
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	626
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	72
Csp6I	GTAC	4 cut(s)	106, 171, 620, 671
CviAII	CATG	5 cut(s)	73, 101, 241, 274, 400
CviJI	RGCY	8 cut(s)	9, 41, 185, 268, 308, 450, 539, 695
CviKI_1	RGCY	8 cut(s)	9, 41, 185, 268, 308, 450, 539, 695
CviQI	GTAC	4 cut(s)	106, 171, 620, 671
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	71, 217, 561
DpnII	GATC	3 cut(s)	69, 215, 559
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	5 cut(s)	76, 104, 244, 277, 403
FatI	CATG	5 cut(s)	72, 100, 240, 273, 399
FauNDI	CATATG	2 cut(s)	223, 289
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	42, 567
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	5 cut(s)	76, 104, 244, 277, 403
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	381, 701
Hpy188III	TCNNGA	3 cut(s)	73, 567, 677
HpyAV	CCTTC	4 cut(s)	139, 440, 628, 652
HpyCH4III	ACNGT	5 cut(s)	110, 340, 465, 489, 689
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	89, 293, 331, 437, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 536
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	5 cut(s)	76, 104, 244, 277, 403
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	69, 215, 559
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	5 cut(s)	171, 186, 195, 213, 464
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	2 cut(s)	55, 424
MaeI	CTAG	2 cut(s)	42, 567
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	160, 608
MalI	GATC	3 cut(s)	71, 217, 561
MboI	GATC	3 cut(s)	69, 215, 559
MboII	GAAGA	7 cut(s)	43, 58, 61, 290, 401, 470, 532
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	3 cut(s)	76, 191, 383
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	274, 314, 402, 529
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	182, 536
NdeI	CATATG	2 cut(s)	223, 289
NdeII	GATC	3 cut(s)	69, 215, 559
NlaIII	CATG	5 cut(s)	76, 104, 244, 277, 403
NmuCI	GTSAC	2 cut(s)	160, 608
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	244
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	450
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	494
PflFI	GACNNNGTC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	630
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	4 cut(s)	107, 172, 621, 672
RsaNI	GTAC	4 cut(s)	106, 171, 620, 671
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	69, 215, 559
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	115
SfaNI	GCATC	2 cut(s)	55, 424
SfcI	CTRYAG	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	3 cut(s)	76, 191, 383
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	469, 517
SspMI	CTAG	2 cut(s)	42, 567
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	110, 340, 465, 489, 689
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	632
TasI	AATT	3 cut(s)	76, 191, 383
TatI	WGTACW	2 cut(s)	105, 670
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	160, 608
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	160, 608
TspDTI	ATGAA	2 cut(s)	89, 471
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	2 cut(s)	42, 567
ZraI	GACGTC	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.