Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018939

Physical Location & Seq

Genomic Coordinates Reverse (-)

37723587 .. 37726502

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAGGCTGGTGTAATGGTGGTGCTGAGAAGAACCAAGCTAGGAAGAAGAAAGAGTGTATGGAGCTTGAAGAAAGACCATCCTTTTTCAAGGATGATGCGATCAGGAATTTGTTTAGTGCAAAAACAATACATGAGTACAGTGCAAGTTTATTGACCTTCTTGGTTATGTTTTACACATTAGCAGTTGTGACATTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACATATGGACGTCTTGCTGTTGGAGATGCATTCAACGAAGGCTTGTATGAAGAACAGTCGCGGTTAAGGAACATTCCACAGTTAGAATCAAAACCCAAATATCAAATGCGGAAGATGACAGCAAAGGAGGCTTGTGGAAAAAGGGTGATTTCCTTCCCTCGTGTTGTTAAGGTTGCTGATTTGGTTTCTATTCTACGGAGCAACATCCACAATGGCTTCCCTGTGATTGATCAATATTCTAGAAACGGAGAAACACTTGTCTTTGGACTAATGCTTCGTAGTCACTTGTTGGTACTTCTGCGGTCGAAGGTAGATTTCCACAAGGATGTGAAGGTAGCAAATGTACTTCTTGATGACTCTTGTGAAGCCGTGGTCGAGAGATTTTTGATTTGGCAAAGCTTTTGGATCACGAAGTGTTCTGTGGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

226

Amino Acids

25.62

Weight (kDa)

9.17

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	32 - 89	5.1e-07	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018939)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g15950
rosa_chinensis	RchiOBHm_Chr1g0360351
rosa_multiflora	Rmu_sc0003207.1_g000043 Rmu_sc0010454.1_g000010
rosa_roxburghii	Rroxscaffold_3G00244910 Rroxscaffold_4G00299310 Rroxscaffold_6G00427710
rosa_samantha	Rh2CG333200
rosa_wichuraiana	Rw5G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	262
AccII	CGCG	1 cut(s)	310
AciI	CCGC	3 cut(s)	310, 358, 550
AclWI	GGATC	2 cut(s)	253, 662
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	663
AfaI	GTAC	4 cut(s)	140, 202, 543, 594
AgsI	TTSAA	3 cut(s)	71, 91, 283
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	41, 67, 215, 648
AluI	AGCT	4 cut(s)	41, 67, 215, 648
AlwI	GGATC	2 cut(s)	253, 662
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AsuHPI	GGTGA	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BauI	CACGAG	1 cut(s)	408
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	478
BfaI	CTAG	2 cut(s)	42, 489
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	88, 265
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	4 cut(s)	80, 100, 453, 580
BseMII	CTCAG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	102, 245, 478, 654
BspACI	CCGC	3 cut(s)	310, 358, 550
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	310
BspPI	GGATC	2 cut(s)	253, 662
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	4 cut(s)	102, 245, 478, 654
BssNI	GRCGYC	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	143, 306, 330
BstACI	GRCGYC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	4 cut(s)	80, 100, 453, 580
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	105, 248, 481, 657
BstMBI	GATC	4 cut(s)	102, 245, 478, 654
BstMCI	CGRYCG	1 cut(s)	554
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 377
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	4 cut(s)	80, 100, 453, 580
BtsIMutI	CAGTG	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	139, 201, 542, 593
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	9 cut(s)	9, 41, 67, 215, 291, 380, 465, 617, 648
CviKI_1	RGCY	9 cut(s)	9, 41, 67, 215, 291, 380, 465, 617, 648
CviQI	GTAC	4 cut(s)	139, 201, 542, 593
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	104, 247, 480, 656
DpnII	GATC	4 cut(s)	102, 245, 478, 654
DraIII	CACNNNGTG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	1 cut(s)	137
FaiI	YATR	6 cut(s)	62, 135, 170, 253, 255, 297
FatI	CATG	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	478
FokI	GGATG	4 cut(s)	67, 107, 440, 587
FspBI	CTAG	2 cut(s)	42, 489
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	2 cut(s)	335, 605
HphI	GGTGA	1 cut(s)	406
Hpy188III	TCNNGA	5 cut(s)	106, 489, 599, 625, 658
HpyAV	CCTTC	5 cut(s)	169, 281, 412, 550, 574
HpyCH4III	ACNGT	3 cut(s)	143, 306, 330
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	122, 146, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 377
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	259
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	102, 245, 478, 654
LmnI	GCTCC	2 cut(s)	64, 447
LpnPI	CCDG	6 cut(s)	91, 201, 216, 225, 243, 483
LweI	GCATC	2 cut(s)	88, 265
MaeI	CTAG	2 cut(s)	42, 489
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	190, 530
MalI	GATC	4 cut(s)	104, 247, 480, 656
MboI	GATC	4 cut(s)	102, 245, 478, 654
MboII	GAAGA	6 cut(s)	43, 58, 61, 83, 311, 373
MluCI	AATT	2 cut(s)	109, 221
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	2 cut(s)	370, 417
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	3 cut(s)	314, 417, 675
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	212, 377
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	4 cut(s)	102, 245, 478, 654
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	190, 530
NsiI	ATGCAT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	229
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	4 cut(s)	140, 202, 543, 594
RsaNI	GTAC	4 cut(s)	139, 201, 542, 593
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	314, 417, 675
Sau3AI	GATC	4 cut(s)	102, 245, 478, 654
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	9 cut(s)	43, 69, 161, 217, 262, 423, 561, 585, 650
SfaNI	GCATC	2 cut(s)	88, 265
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	2 cut(s)	109, 221
SsiI	CCGC	3 cut(s)	310, 358, 550
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	2 cut(s)	42, 489
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	143, 306, 330
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	554, 624
TasI	AATT	2 cut(s)	109, 221
TatI	WGTACW	2 cut(s)	138, 592
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	314, 417, 675
Tru9I	TTAA	3 cut(s)	314, 417, 675
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	190, 530
Tsp45I	GTSAC	2 cut(s)	190, 530
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	460, 510
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	488
XspI	CTAG	2 cut(s)	42, 489
ZraI	GACGTC	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.