Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018939

Physical Location & Seq

Genomic Coordinates Forward (+)

5320446 .. 5328872

Gene Structure 8427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTATTGAGCCATTTGCAGAATACTATTCCAATGATGTTGATGCAAAGATCAGCTACTCCGGAAGCAAGAATTATCTAGCAAGACCTAGGGCAGTTATCCAAGACAAACTCAAGGAAGTTATGTTTTACACATTAGCAGTTGTGACATTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACATATGGACGTCTTGTAGGCATGTTTGTTGTTAGATTCTACAAGAAGCTCAACATTGAAGAGGGAATACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

92

Amino Acids

10.29

Weight (kDa)

8.92

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	45 - 87	1.6e-06	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018939)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g15950
rosa_chinensis	RchiOBHm_Chr1g0360351
rosa_multiflora	Rmu_sc0003207.1_g000043 Rmu_sc0010454.1_g000010
rosa_roxburghii	Rroxscaffold_3G00244910 Rroxscaffold_4G00299310 Rroxscaffold_6G00427710
rosa_samantha	Rh2CG333200
rosa_wichuraiana	Rw5G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	62
AclWI	GGATC	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	57, 170, 253
AluI	AGCT	3 cut(s)	57, 170, 253
AlwI	GGATC	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	62
AspA2I	CCTAGG	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	89
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BarI	GAAGNNNNNNTAC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	186
BfaI	CTAG	2 cut(s)	80, 90
BfmI	CTRYAG	1 cut(s)	275
BlnI	CCTAGG	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	51, 200
BspEI	TCCGGA	1 cut(s)	62
BspPI	GGATC	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	51, 200
BssNI	GRCGYC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	54, 203
BstMBI	GATC	2 cut(s)	51, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	4 cut(s)	13, 57, 170, 253
CviKI_1	RGCY	4 cut(s)	13, 57, 170, 253
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	2 cut(s)	53, 202
DpnII	GATC	2 cut(s)	51, 200
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	229
FaiI	YATR	5 cut(s)	125, 208, 210, 227, 277
FatI	CATG	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	208
FspBI	CTAG	2 cut(s)	80, 90
HapII	CCGG	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	20, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	214
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	51, 200
LpnPI	CCDG	5 cut(s)	76, 156, 171, 180, 198
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	80, 90
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	53, 202
MboI	GATC	2 cut(s)	51, 200
MboII	GAAGA	1 cut(s)	275
MluCI	AATT	2 cut(s)	73, 176
MnlI	CCTC	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	51, 200
NlaIII	CATG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	51, 200
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	5 cut(s)	59, 91, 172, 217, 255
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	73, 176
SspMI	CTAG	2 cut(s)	80, 90
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	89
TaiI	ACGT	1 cut(s)	217
TasI	AATT	2 cut(s)	73, 176
TfiI	GAWTC	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	229
XmaJI	CCTAGG	1 cut(s)	89
XspI	CTAG	2 cut(s)	80, 90
ZraI	GACGTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.