Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018939

Physical Location & Seq

Genomic Coordinates Reverse (-)

43857331 .. 43860214

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG333200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATGATGCGATCAGGAATTTGTTTAGTGCAAAAACAATACATGAGTACAGTGCCCAAAGTTTATTGACCTTCTTGGTTATGTTTTACACATTAGCAGTTGTGACATTTGGTACTGCTGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACATATGGATGTCTTGTAGGCATGTTTGTTGTTAGCTTCTACAAGAAGCTCAACATTGAAGAGGGAATATTGTACAGAATAATTCCTGAGCTTCCCAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

6.53

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Voltage_CLC	PF00654	2 - 74	3.3e-10	Voltage gated chloride channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018939)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g15950
rosa_chinensis	RchiOBHm_Chr1g0360351
rosa_multiflora	Rmu_sc0003207.1_g000043 Rmu_sc0010454.1_g000010
rosa_roxburghii	Rroxscaffold_3G00244910 Rroxscaffold_4G00299310 Rroxscaffold_6G00427710
rosa_samantha	Rh2CG333200
rosa_wichuraiana	Rw5G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	3 cut(s)	50, 115, 236
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	4 cut(s)	128, 198, 211, 253
AluI	AGCT	4 cut(s)	128, 198, 211, 253
AlwI	GGATC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BciT130I	CCWGG	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	10, 176
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	12, 158
BspCNI	CTCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	234
BssMI	GATC	2 cut(s)	12, 158
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	10, 176
BstKTI	GATC	2 cut(s)	15, 161
BstMBI	GATC	2 cut(s)	12, 158
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 259
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	10, 176
BtsIMutI	CAGTG	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	49, 114, 235
CviAII	CATG	2 cut(s)	44, 184
CviJI	RGCY	4 cut(s)	128, 198, 211, 253
CviKI_1	RGCY	4 cut(s)	128, 198, 211, 253
CviQI	GTAC	3 cut(s)	49, 114, 235
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	14, 160
DpnII	GATC	2 cut(s)	12, 158
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	47, 187
FaiI	YATR	5 cut(s)	45, 83, 166, 168, 185
FatI	CATG	2 cut(s)	43, 183
FauNDI	CATATG	1 cut(s)	166
FokI	GGATG	2 cut(s)	17, 183
Hin1II	CATG	2 cut(s)	47, 187
Hpy188III	TCNNGA	2 cut(s)	16, 248
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 259
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	47, 187
Kzo9I	GATC	2 cut(s)	12, 158
LpnPI	CCDG	5 cut(s)	114, 129, 138, 156, 261
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	14, 160
MboI	GATC	2 cut(s)	12, 158
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	3 cut(s)	19, 134, 243
MnlI	CCTC	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	125, 259
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	12, 158
NlaIII	CATG	2 cut(s)	47, 187
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	50, 115, 236
RsaNI	GTAC	3 cut(s)	49, 114, 235
RseI	CAYNNNNRTG	1 cut(s)	169
Sau3AI	GATC	2 cut(s)	12, 158
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	5 cut(s)	74, 130, 200, 213, 255
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	3 cut(s)	19, 134, 243
SspI	AATATT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	53
TasI	AATT	3 cut(s)	19, 134, 243
TatI	WGTACW	2 cut(s)	48, 234
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.