pycom16g20230

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
17900982 .. 17901697
716 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20230.2

Sequence Viewer

Length: 309 bp
ATGAAATCCGTGTACATCGTTTTCTTATGCTTCCTTGTAACAGTTCTCTGTCTTTCTTCCCACAAGATCAGTACCGCTTCACGGACTTCTCCCCCAGGAAGACGACCCATGAGAAAATTAAGCATGTCATTGACCAACAACAAGGTCGTTGATGGAGACGGAGAGTCAGAAACATCGAAGTTCCAAGAAATTCCAGTAGTAATCCACTTTTCAAACAGCAAGAGTGATTTAGACGAGCTTGTTTATCACATCGATTACCATGGAGTGACCACTCATCCAAATCCAACACCTAGACATCCCACACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.42

Weight (kDa)

8.67

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06540
malus_domestica MD16G1241400.v1.1
prunus_persica Prupe.1G068200_v2.0.a1
pyrus_communis pycom16g20230
rosa_chinensis RchiOBHm_Chr4g0398461
rosa_roxburghii Rroxscaffold_5G00343420
rosa_rugosa Rorug04G0008100
rosa_samantha Rh4AG086300 Rh4BG083200 Rh4CG094100 Rh4DG078000
rosa_wichuraiana Rw4G007220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 2 cut(s) 14, 73
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 213
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 106
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 94, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 94, 259
BseGI GGATG 2 cut(s) 274, 295
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 1 cut(s) 75
BspDI ATCGAT 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 94, 259
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 274, 295
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 252
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 274, 295
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 2 cut(s) 13, 72
CviAII CATG 3 cut(s) 109, 124, 260
CviJI RGCY 1 cut(s) 238
CviKI_1 RGCY 1 cut(s) 238
CviQI GTAC 2 cut(s) 13, 72
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 3 cut(s) 112, 127, 263
FaiI YATR 5 cut(s) 28, 110, 125, 261, 307
FatI CATG 3 cut(s) 108, 123, 259
FokI GGATG 2 cut(s) 261, 282
FspBI CTAG 1 cut(s) 291
Hin1II CATG 3 cut(s) 112, 127, 263
HinfI GANTC 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 112, 127, 263
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 81, 108, 207
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 37, 265
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 48, 111
MluCI AATT 2 cut(s) 116, 189
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 308
MseI TTAA 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 259
NdeII GATC 1 cut(s) 66
NlaIII CATG 3 cut(s) 112, 127, 263
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 127
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
RsaI GTAC 2 cut(s) 14, 73
RsaNI GTAC 2 cut(s) 13, 72
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 66
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 96
SetI ASST 3 cut(s) 147, 240, 292
Sse9I AATT 2 cut(s) 116, 189
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 176, 252
TasI AATT 2 cut(s) 116, 189
TatI WGTACW 1 cut(s) 12
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 97, 174
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.