Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0019283

Physical Location & Seq

Genomic Coordinates Reverse (-)

19230423 .. 19231870

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACGAATTACTTCAATTCCCCTGCATTGGATGTTTCAGTTGCTTTTCCGCAAGCAACGCCGGCTTCTACTTTTCCTCCCTGCACTTCGAATTACTACCAGATTGATGATCTATCGACACCTGAGGAGCAGGCTATTAGGTTGAGAGTAAGAGAGTGTATGGAGAAAGACGTGGCTCCAATTATGGCAGAGTATTGTGAGAAGGCAGAGTTTCCATTTCAAATTATTCCAAAGCTTGGTGCATTGCGCATTGCTGGTGGGACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTCTTACGGCAAATGCTTTTGCTACAGCTGAAATTGCAAGAGTTGATGCAAGCTGTTCTACTTTCTTCTTGGTTCATTCCTCAGCAGCAATGCTTACTATTGCATTATGTGGGTCGGAGGCTCAAAAGCAGAAATATCTACTTTCTTTGGCTGAATTTAAGACTGTCGCCTGCTGGGGTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTGCCTTGAGAGCGACAGCAACAAAGGTCAAGGATTTCAACCTTCTCATTTGCTTCTTTATTTCTGTTAAATGGTATTATCATGCTCTTTTGGTTTTTGGGTGTCATGGCTCCGATCATGCTATATCATGTATTCTTGTGTTGTTGGGATCGTCAGGTGGAAGGAGGTTGGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

227

Amino Acids

24.45

Weight (kDa)

6.08

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	40 - 149	1.7e-25	Acyl-CoA dehydrogenase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019283)

Species	Orthologous Gene IDs
malus_domestica	MD12G1169800.v1.1 MD12G1170600.v1.1
pyrus_communis	pycom04g14040 pycom12g10520 pycom12g16040 pycom12g16090 pycom16g21080
rosa_multiflora	Rmu_sc0011275.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	236
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	446
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	3 cut(s)	28, 236, 488
AgsI	TTSAA	3 cut(s)	16, 221, 541
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	3 cut(s)	235, 320, 345
AluI	AGCT	3 cut(s)	235, 320, 345
AlwI	GGATC	1 cut(s)	658
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	89
AxyI	CCTNAGG	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	177, 613
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	328, 487
Bpu10I	CCTNAGC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	3 cut(s)	61, 91, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 236, 488
Bse118I	RCCGGY	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	3 cut(s)	242, 249, 387
BseBI	CCWGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	28, 236, 488
BseMI	GCAATG	3 cut(s)	242, 249, 387
BseMII	CTCAG	3 cut(s)	114, 387, 468
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	28, 236, 488
BsmFI	GGGAC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	109, 616, 650
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	115, 386, 469
BspLI	GGNNCC	2 cut(s)	177, 613
BspPI	GGATC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	242, 249, 387
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	3 cut(s)	109, 616, 650
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	54, 63, 132, 343, 463
BstDEI	CTNAG	3 cut(s)	123, 373, 477
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	112, 619, 653
BstMBI	GATC	3 cut(s)	109, 616, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 62, 326, 512
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	5 cut(s)	54, 63, 132, 343, 463
CfoI	GCGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	4 cut(s)	584, 608, 620, 630
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	3 cut(s)	123, 373, 477
DpnI	GATC	3 cut(s)	111, 618, 652
DpnII	GATC	3 cut(s)	109, 616, 650
Eco81I	CCTNAGG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	283
FaeI	CATG	4 cut(s)	587, 611, 623, 633
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	4 cut(s)	583, 607, 619, 629
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	378
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	469
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	587, 611, 623, 633
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	233
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	2 cut(s)	409, 616
HpyAV	CCTTC	3 cut(s)	196, 554, 657
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	7 cut(s)	26, 84, 242, 329, 341, 395, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 62, 326, 512
HpyF3I	CTNAG	3 cut(s)	123, 373, 477
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	587, 611, 623, 633
HspAI	GCGC	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	109, 616, 650
LmnI	GCTCC	3 cut(s)	127, 181, 617
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	2 cut(s)	328, 487
MaeII	ACGT	1 cut(s)	171
MalI	GATC	3 cut(s)	111, 618, 652
MboI	GATC	3 cut(s)	109, 616, 650
MboII	GAAGA	1 cut(s)	349
MluCI	AATT	7 cut(s)	7, 16, 91, 180, 222, 324, 446
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	5 cut(s)	87, 118, 382, 403, 660
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	450, 570
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	58, 62, 326, 512
NaeI	GCCGGC	1 cut(s)	63
NdeII	GATC	3 cut(s)	109, 616, 650
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	587, 611, 623, 633
NlaIV	GGNNCC	2 cut(s)	177, 613
NsbI	TGCGCA	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	177, 613
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	450, 570
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	109, 616, 650
ScrFI	CCNGG	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	328, 487
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	7 cut(s)	7, 16, 91, 180, 222, 324, 446
SsiI	CCGC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	89, 116
TasI	AATT	7 cut(s)	7, 16, 91, 180, 222, 324, 446
Tru1I	TTAA	2 cut(s)	450, 570
Tru9I	TTAA	2 cut(s)	450, 570
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.