Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008932

Physical Location & Seq

Genomic Coordinates Forward (+)

25105655 .. 25108078

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23860.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAATTCCCTAGGGAAAATATGATATACAGGGAAAGACATTGTCCACCAGAAGAGGAAAAATTGCGTTGTCTTATTCCAGCACGGGAAGGGTATATGACTCCATTCCCCTGGCCTAAAGGCCGTGACTATGTCCACTATGCCAATGTACCTTATAAAAGCCTCACAGTTGAGAAAGCTGTACAGAACTGGGTGCAATTTCAGGGAAATGTTTTCAAATTTCCAGGTGGAGGAACAATGTTCCCCCAGGGCGCAGATGCATATATTGATGAACTTGCATCAGTTATTCCGATTGCAGATGGCTCTGTCAGGACAGCATTGGATACCGGTTGTGGAGTTGCAAGTTGGGGTGCATACTTATTGAAGAGAAATGTATTAGCCATGTCCTTTGCACCGCGGGACAATCATGAAGCCCAAGTGCAGTTTGCATTGGAGCGAGGAGTACCTGCTGTTATTGGTGTGCTTGGATCGATTCGTCTTCCATACCCAGCTAGGGCCTTTGATATGGCCCAGTGCTCTCGGTGTTTAATTCCATGGACTGCAAATGATGGAATGTACCTAAAAGAAGTTGATCGGGTCCTTAGACCTGGTGGATACTGGATATTGTCTGGACCTCCAATTAATTGGAAGACCTACTACAAAACATGGAAGCGGTCTAAGGAGGACGTGCAGGCAGAGCAAAAACAGATTGAAGCACTAGCTGAAAGTCTTTGCTGGGAGAAAAAGTATGAGAAAGGAGATATGGCTATCTGGAAAAAAAAAGTTAATACAAAATCCTGCAGGAGAAAGTCTGTCGATGTATGCCAGACAGAGGATACTGATGATGTCTGGTACAAGAAAATGGACACATGTGTAACCCCTTCTCCTGAGGTAACCAACGCAAATGAAGTAGCAGTAGGGGAGTTGAAGTTTCCTGCAAGGCTTTATGCAGTCCCTCCTCGAATAGCTAACGGTTTAGTTGTGGGGTTTACAACTGAATCTTACCAAGAGGACAATAAACTTTGGAAAAAGCATGTAAAAGAATCAACACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

345

Amino Acids

39.2

Weight (kDa)

8.79

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18030
fragaria_vesca	FvH4_5g21220 FvH4_5g21220 FvH4_5g21220 FvH4_5g21220 FvH4_5g21220
malus_domestica	MD06G1039700.v1.1 MD16G1269600.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1 Prupe.5G045100_v2.0.a1
pyrus_communis	pycom06g03330 pycom16g23860
rosa_chinensis	RchiOBHm_Chr7g0208361
rosa_laevigata	RLG00000003219
rosa_multiflora	Rmu_ssc0000063.1_g000002
rosa_roxburghii	Rroxscaffold_3G00250520
rosa_rugosa	Rorug07G0103900
rosa_samantha	Rh7AG238300 Rh7BG233800 Rh7CG253800 Rh7DG244000
rosa_wichuraiana	Rw7G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	454
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	395, 397, 652
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	5, 218
AfaI	GTAC	5 cut(s)	150, 183, 444, 557, 833
AfiI	CCNNNNNNNGG	3 cut(s)	230, 493, 811
AflIII	ACRYGT	1 cut(s)	848
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	217, 364, 692, 907
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	4 cut(s)	110, 223, 246, 586
AluBI	AGCT	4 cut(s)	179, 491, 701, 947
AluI	AGCT	4 cut(s)	179, 491, 701, 947
Alw21I	GWGCWC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	4 cut(s)	113, 121, 495, 507
ApoI	RAATTY	2 cut(s)	5, 218
AseI	ATTAAT	1 cut(s)	621
AsiGI	ACCGGT	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	4 cut(s)	495, 508, 577, 611
AvaII	GGWCC	2 cut(s)	577, 611
AvrII	CCTAGG	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	867
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	2 cut(s)	470, 635
Bbv12I	GWGCWC	1 cut(s)	518
BccI	CCATC	2 cut(s)	293, 542
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	4 cut(s)	112, 225, 248, 588
BciVI	GTATCC	3 cut(s)	316, 587, 808
BfaI	CTAG	3 cut(s)	12, 492, 698
BfmI	CTRYAG	1 cut(s)	778
BfuAI	ACCTGC	1 cut(s)	454
BfuI	GTATCC	3 cut(s)	316, 587, 808
BlnI	CCTAGG	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	112, 225, 248, 588
Bme18I	GGWCC	2 cut(s)	577, 611
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	4 cut(s)	495, 508, 577, 611
BmiI	GGNNCC	1 cut(s)	578
BmrFI	CCNGG	4 cut(s)	112, 225, 248, 588
BmrI	ACTGGG	2 cut(s)	199, 505
BmsI	GCATC	2 cut(s)	247, 287
BmuI	ACTGGG	2 cut(s)	199, 505
BpiI	GAAGAC	2 cut(s)	470, 635
Bsa29I	ATCGAT	1 cut(s)	470
BsaJI	CCNNGG	6 cut(s)	11, 110, 246, 247, 395, 533
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	710, 740, 847, 877, 893, 923
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 493, 811
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	3 cut(s)	194, 511, 602
Bse21I	CCTNAGG	1 cut(s)	867
BseBI	CCWGG	4 cut(s)	112, 225, 248, 588
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	6 cut(s)	11, 110, 246, 247, 395, 533
BseLI	CCNNNNNNNGG	3 cut(s)	230, 493, 811
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	3 cut(s)	194, 511, 602
BseRI	GAGGAG	2 cut(s)	453, 927
BseYI	CCCAGC	2 cut(s)	487, 714
BsgI	GTGCAG	2 cut(s)	440, 689
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	4 cut(s)	115, 123, 497, 509
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	413, 917
BslI	CCNNNNNNNGG	3 cut(s)	230, 493, 811
BsmFI	GGGAC	2 cut(s)	413, 917
BsnI	GGCC	4 cut(s)	115, 123, 497, 509
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	467, 571
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	3 cut(s)	395, 397, 652
BspANI	GGCC	4 cut(s)	115, 123, 497, 509
BspCNI	CTCAG	1 cut(s)	859
BspDI	ATCGAT	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	578
BspMAI	CTGCAG	1 cut(s)	782
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	194, 511, 602
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	6 cut(s)	11, 110, 246, 247, 395, 533
BssMI	GATC	2 cut(s)	467, 571
BssT1I	CCWWGG	2 cut(s)	11, 533
Bst2UI	CCWGG	4 cut(s)	112, 225, 248, 588
Bst4CI	ACNGT	2 cut(s)	169, 953
Bst6I	CTCTTC	2 cut(s)	48, 359
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	3 cut(s)	581, 657, 867
BstDSI	CCRYGG	2 cut(s)	395, 533
BstEII	GGTNACC	1 cut(s)	871
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	2 cut(s)	470, 574
BstMBI	GATC	2 cut(s)	467, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstNI	CCWGG	4 cut(s)	112, 225, 248, 588
BstNSI	RCATGY	2 cut(s)	852, 1016
BstPI	GGTNACC	1 cut(s)	871
BstSCI	CCNGG	4 cut(s)	110, 223, 246, 586
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	397
BstV2I	GAAGAC	2 cut(s)	470, 635
BstXI	CCANNNNNNTGG	2 cut(s)	111, 624
Bsu15I	ATCGAT	1 cut(s)	470
Bsu36I	CCTNAGG	1 cut(s)	867
BsuI	GTATCC	3 cut(s)	316, 587, 808
BsuRI	GGCC	4 cut(s)	115, 123, 497, 509
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	2 cut(s)	395, 533
BtrI	CACGTC	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	672
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	4 cut(s)	495, 508, 577, 611
Cfr42I	CCGCGG	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	470
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	5 cut(s)	149, 182, 443, 556, 832
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	6 cut(s)	382, 407, 534, 645, 849, 1013
CviQI	GTAC	5 cut(s)	149, 182, 443, 556, 832
DdeI	CTNAG	3 cut(s)	581, 657, 867
DpnI	GATC	2 cut(s)	469, 573
DpnII	GATC	2 cut(s)	467, 571
Eam1104I	CTCTTC	2 cut(s)	48, 359
EarI	CTCTTC	2 cut(s)	48, 359
Eco130I	CCWWGG	2 cut(s)	11, 533
Eco47I	GGWCC	2 cut(s)	577, 611
Eco81I	CCTNAGG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	871
EcoO109I	RGGNCCY	2 cut(s)	495, 577
EcoO65I	GGTNACC	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	110, 223, 246, 586
EcoT14I	CCWWGG	2 cut(s)	11, 533
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	11, 533
FaeI	CATG	6 cut(s)	385, 410, 537, 648, 852, 1016
FaqI	GGGAC	2 cut(s)	413, 917
FatI	CATG	6 cut(s)	381, 406, 533, 644, 848, 1012
FauI	CCCGC	1 cut(s)	390
FspBI	CTAG	3 cut(s)	12, 492, 698
GlaI	GCGC	1 cut(s)	253
GsaI	CCCAGC	2 cut(s)	491, 718
HaeIII	GGCC	4 cut(s)	115, 123, 497, 509
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	6 cut(s)	385, 410, 537, 648, 852, 1016
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	4 cut(s)	100, 472, 977, 1022
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	47, 136, 969
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	5 cut(s)	310, 407, 609, 751, 866
Hpy8I	GTNNAC	3 cut(s)	47, 136, 969
HpyAV	CCTTC	2 cut(s)	83, 870
HpyCH4III	ACNGT	2 cut(s)	169, 953
HpyCH4IV	ACGT	1 cut(s)	666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	3 cut(s)	581, 657, 867
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	6 cut(s)	385, 410, 537, 648, 852, 1016
HspAI	GCGC	1 cut(s)	252
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	467, 571
LmnI	GCTCC	1 cut(s)	433
LweI	GCATC	2 cut(s)	247, 287
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	3 cut(s)	12, 492, 698
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	125, 853, 871
MalI	GATC	2 cut(s)	469, 573
MboI	GATC	2 cut(s)	467, 571
MboII	GAAGA	4 cut(s)	65, 376, 470, 640
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	7 cut(s)	5, 62, 197, 218, 528, 618, 622
MlyI	GAGTC	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	3 cut(s)	527, 621, 765
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	4 cut(s)	112, 225, 248, 588
MvaI	CCWGG	4 cut(s)	112, 225, 248, 588
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	676
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	2 cut(s)	467, 571
NlaIII	CATG	6 cut(s)	385, 410, 537, 648, 852, 1016
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	2 cut(s)	852, 1016
PagI	TCATGA	1 cut(s)	406
PasI	CCCWGGG	1 cut(s)	247
PciI	ACATGT	1 cut(s)	848
PfeI	GAWTC	3 cut(s)	472, 977, 1022
PflFI	GACNNNGTC	2 cut(s)	42, 131
PinAI	ACCGGT	1 cut(s)	326
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	577
PscI	ACATGT	1 cut(s)	848
PshBI	ATTAAT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	4 cut(s)	110, 223, 246, 586
PspEI	GGTNACC	1 cut(s)	871
PspFI	CCCAGC	2 cut(s)	487, 714
PspGI	CCWGG	4 cut(s)	110, 223, 246, 586
PspN4I	GGNNCC	1 cut(s)	578
PspPI	GGNCC	4 cut(s)	495, 508, 577, 611
PspPPI	RGGWCCY	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	782
PsyI	GACNNNGTC	2 cut(s)	42, 131
RsaI	GTAC	5 cut(s)	150, 183, 444, 557, 833
RsaNI	GTAC	5 cut(s)	149, 182, 443, 556, 832
SacII	CCGCGG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	527, 621, 765
Sau3AI	GATC	2 cut(s)	467, 571
Sau96I	GGNCC	4 cut(s)	495, 508, 577, 611
SbfI	CCTGCAGG	1 cut(s)	782
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	4 cut(s)	112, 225, 248, 588
SdaI	CCTGCAGG	1 cut(s)	782
SduI	GDGCHC	1 cut(s)	518
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	247, 287
SfcI	CTRYAG	1 cut(s)	778
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	577, 611
Sse8387I	CCTGCAGG	1 cut(s)	782
Sse9I	AATT	7 cut(s)	5, 62, 197, 218, 528, 618, 622
SsiI	CCGC	3 cut(s)	395, 397, 652
SspMI	CTAG	3 cut(s)	12, 492, 698
StyD4I	CCNGG	4 cut(s)	110, 223, 246, 586
StyI	CCWWGG	2 cut(s)	11, 533
TaaI	ACNGT	2 cut(s)	169, 953
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	3 cut(s)	470, 795, 940
TasI	AATT	7 cut(s)	5, 62, 197, 218, 528, 618, 622
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	472, 977, 1022
Tru1I	TTAA	3 cut(s)	527, 621, 765
Tru9I	TTAA	3 cut(s)	527, 621, 765
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	17, 285, 423, 900
TspRI	CASTG	1 cut(s)	518
Tth111I	GACNNNGTC	2 cut(s)	42, 131
VpaK11BI	GGWCC	2 cut(s)	577, 611
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	2 cut(s)	5, 218
XceI	RCATGY	2 cut(s)	852, 1016
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	3 cut(s)	12, 492, 698
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.