pycom16g25930
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013788
Physical Location & Seq
Reverse (-)
28121207 .. 28123827
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25930.5

Sequence Viewer

Length: 948 bp
ATGGGAAACTGTTACGGATCTCCAGTGACTAATAATCATAGCCCATCATCTACAACCAAGCTGCCTACCCCAGTGGCATCGAGATACGAAAACAAGAAAAATGGATTCGTTGGAAAAAGTGTGACCAGAACCACAAAAGTTGCCAGGAATATTAGTGGCAAAAGAAATACTGGTGGAACAACGGAGAGAAGTGAAAGAAAGGCACAAGTGATATTAAGCAAAAGCAGCAGCAGAAATAATTATACTGAAGCAGCTGGAGGTGTGGCTCCTCCTCCTCCTCCTCCTCCTCCTGATACGGCAGCTACAGCTGCTCCAATCGAAAGTATACCAAGGTTGAAAGAGTTCACGTTAGCAGAGCTGAAGAAGTGTACTCAAAATTTCCGACCAGATACAATACTAGGAGAGGGAGGTTTCGGAAGGGTTTTCAAGGGCTGGGTCGATGCCTCAACGTATGCCCCATCAAAGGGAGGCGTCGGCTTGGCCGTCGCAGTCAAGAAGTCCAGCTCAGATAGCTATCAAGGTCACCAAGAATGGCAGGCGGAGGTGAATTTCTTGGGGAAGTGTCGTCATCCAAACCTCGTTAGGCTGCTGGGACATTGCTGCGAAGAAAACCAATTCCTTCTCGTCTACGAATATATGCAGAAAGGCAGCTTGGAAAACCACCTTTTCAGAAAAGGTCAAGAACCACTTCCATGGGAAATAAGACTAAAGATCGCAATTGGAGCTGCAAGAGGCCTTGCTTATCTGCACAACTCAGAAAAAGTCATTTACCGTGACTTTAAGGCCTCCAATATTTTGCTGGATCCGGCCTACAATGCGAAACTTTCTGATTTTGGGCTGGTAAAGATGGGGCCTATGAATGGAAACTCCCACGTAACCACACGTATTATTGGAACTTACGGATACGCAGCTCCAGAATATGTCGCAACTGGTAAACACAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

316

Amino Acids

34.38

Weight (kDa)

9.62

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013788)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76360
fragaria_vesca FvH4_5g25310
malus_domestica MD06G1009600.v1.1 MD16G1285000.v1.1
prunus_persica Prupe.5G010900_v2.0.a1
pyrus_communis pycom06g00790 pycom16g25930
rosa_chinensis RchiOBHm_Chr7g0215531
rosa_laevigata RLG00000002650
rosa_multiflora Rmu_sc0000898.1_g000098
rosa_roxburghii Rroxscaffold_3G00244160
rosa_rugosa Rorug07G0154700
rosa_samantha Rh7AG290800 Rh7BG282900 Rh7CG310700 Rh7DG294400
rosa_wichuraiana Rw7G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 325, 627
AciI CCGC 1 cut(s) 539
AclWI GGATC 3 cut(s) 25, 797, 810
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 376, 547
AcuI CTGAAG 2 cut(s) 267, 380
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 463, 464, 860
AflIII ACRYGT 1 cut(s) 881
AgsI TTSAA 2 cut(s) 337, 427
AjnI CCWGG 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AlwI GGATC 3 cut(s) 25, 797, 810
AoxI GGCC 5 cut(s) 480, 733, 783, 807, 851
ApoI RAATTY 2 cut(s) 376, 547
Asp700I GAANNNNTTC 2 cut(s) 341, 687
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 515, 556
BamHI GGATCC 1 cut(s) 802
BccI CCATC 3 cut(s) 52, 466, 841
BceAI ACGGC 2 cut(s) 312, 467
BciT130I CCWGG 1 cut(s) 145
BciVI GTATCC 1 cut(s) 896
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 303
BfuI GTATCC 1 cut(s) 896
Bme1390I CCNGG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 3 cut(s) 267, 804, 852
BmrFI CCNGG 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 2 cut(s) 86, 430
BmuI ACTGGG 1 cut(s) 65
BpmI CTGGAG 3 cut(s) 6, 276, 897
BsaAI YACGTR 2 cut(s) 874, 884
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 329, 692
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 464, 860
Bse1I ACTGG 4 cut(s) 23, 71, 175, 934
Bse3DI GCAATG 1 cut(s) 595
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 329, 692
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 3 cut(s) 463, 464, 860
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 519, 768
BseNI ACTGG 4 cut(s) 23, 71, 175, 934
BseRI GAGGAG 7 cut(s) 258, 261, 264, 267, 270, 273, 276
BseYI CCCAGC 2 cut(s) 432, 589
BsgI GTGCAG 1 cut(s) 731
BshFI GGCC 5 cut(s) 482, 735, 785, 809, 853
BsiSI CCGG 1 cut(s) 806
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 3 cut(s) 463, 464, 860
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 5 cut(s) 482, 735, 785, 809, 853
Bsp143I GATC 3 cut(s) 17, 711, 802
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 1 cut(s) 539
BspANI GGCC 5 cut(s) 482, 735, 785, 809, 853
BspCNI CTCAG 2 cut(s) 518, 767
BspLI GGNNCC 3 cut(s) 267, 804, 852
BspPI GGATC 3 cut(s) 25, 797, 810
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 4 cut(s) 23, 71, 175, 934
BssECI CCNNGG 2 cut(s) 329, 692
BssMI GATC 3 cut(s) 17, 711, 802
BssNAI GTATAC 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 329, 692
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 11, 773
BstACI GRCGYC 1 cut(s) 471
BstBAI YACGTR 2 cut(s) 874, 884
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 505, 754
BstDSI CCRYGG 1 cut(s) 692
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 3 cut(s) 20, 714, 805
BstMBI GATC 3 cut(s) 17, 711, 802
BstMWI GCNNNNNNNGC 6 cut(s) 225, 305, 308, 510, 722, 815
BstNI CCWGG 1 cut(s) 145
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 303
BstX2I RGATCY 2 cut(s) 17, 802
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 2 cut(s) 17, 802
BstZ17I GTATAC 1 cut(s) 326
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 5 cut(s) 482, 735, 785, 809, 853
BtgI CCRYGG 1 cut(s) 692
BtsCI GGATG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 30, 78
Cac8I GCNNGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 851
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 1 cut(s) 693
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 505, 754
DpnI GATC 3 cut(s) 19, 713, 804
DpnII GATC 3 cut(s) 17, 711, 802
EaeI YGGCCR 1 cut(s) 480
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 329, 692
Eco147I AGGCCT 2 cut(s) 735, 785
Eco57I CTGAAG 2 cut(s) 267, 380
Eco91I GGTNACC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 851
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 329, 692
ErhI CCWWGG 2 cut(s) 329, 692
FaeI CATG 1 cut(s) 696
FaiI YATR 9 cut(s) 39, 243, 326, 453, 636, 638, 694, 857, 921
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FaqI GGGAC 1 cut(s) 606
FatI CATG 1 cut(s) 692
FblI GTMKAC 2 cut(s) 325, 627
FokI GGATG 1 cut(s) 555
FspBI CTAG 1 cut(s) 398
GsaI CCCAGC 2 cut(s) 436, 593
GsuI CTGGAG 3 cut(s) 6, 276, 897
HaeIII GGCC 5 cut(s) 482, 735, 785, 809, 853
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 1 cut(s) 696
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 515, 556
Hpy166II GTNNAC 5 cut(s) 326, 345, 369, 628, 935
Hpy188I TCNGA 6 cut(s) 383, 416, 508, 671, 757, 829
Hpy188III TCNNGA 5 cut(s) 81, 290, 493, 680, 914
Hpy8I GTNNAC 5 cut(s) 326, 345, 369, 628, 935
Hpy99I CGWCG 2 cut(s) 476, 488
HpyAV CCTTC 2 cut(s) 411, 629
HpyCH4III ACNGT 2 cut(s) 11, 773
HpyCH4IV ACGT 4 cut(s) 347, 449, 873, 883
HpyCH4V TGCA 3 cut(s) 640, 728, 748
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 305, 308, 510, 722, 815
HpyF3I CTNAG 2 cut(s) 505, 754
HpySE526I ACGT 4 cut(s) 347, 449, 873, 883
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 1 cut(s) 696
Kzo9I GATC 3 cut(s) 17, 711, 802
LmnI GCTCC 4 cut(s) 271, 316, 722, 916
LweI GCATC 2 cut(s) 86, 430
MaeI CTAG 1 cut(s) 398
MaeII ACGT 4 cut(s) 347, 449, 873, 883
MaeIII GTNAC 6 cut(s) 11, 25, 121, 521, 773, 874
MalI GATC 3 cut(s) 19, 713, 804
MboI GATC 3 cut(s) 17, 711, 802
MboII GAAGA 2 cut(s) 373, 617
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 17, 802
MluCI AATT 6 cut(s) 238, 376, 547, 614, 717, 940
MmeI TCCRAC 2 cut(s) 91, 406
MroXI GAANNNNTTC 2 cut(s) 341, 687
MseI TTAA 3 cut(s) 215, 780, 946
MslI CAYNNNNRTG 1 cut(s) 691
MspA1I CMGCKG 2 cut(s) 254, 308
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 717
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 6 cut(s) 225, 305, 308, 510, 722, 815
NcoI CCATGG 1 cut(s) 692
NdeII GATC 3 cut(s) 17, 711, 802
NlaIII CATG 1 cut(s) 696
NlaIV GGNNCC 3 cut(s) 267, 804, 852
NmuCI GTSAC 4 cut(s) 25, 121, 521, 773
PceI AGGCCT 2 cut(s) 735, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdmI GAANNNNTTC 2 cut(s) 341, 687
PfeI GAWTC 1 cut(s) 105
Ppu21I YACGTR 2 cut(s) 874, 884
Psp6I CCWGG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 2 cut(s) 432, 589
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 267, 804, 852
PspPI GGNCC 1 cut(s) 851
PsuI RGATCY 2 cut(s) 17, 802
PvuII CAGCTG 2 cut(s) 254, 308
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 3 cut(s) 215, 780, 946
Sau3AI GATC 3 cut(s) 17, 711, 802
Sau96I GGNCC 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 145
SfaNI GCATC 2 cut(s) 86, 430
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 691
Sse9I AATT 6 cut(s) 238, 376, 547, 614, 717, 940
SseBI AGGCCT 2 cut(s) 735, 785
SsiI CCGC 1 cut(s) 539
SspI AATATT 2 cut(s) 151, 793
SspMI CTAG 1 cut(s) 398
StuI AGGCCT 2 cut(s) 735, 785
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 329, 692
TaaI ACNGT 2 cut(s) 11, 773
TaiI ACGT 4 cut(s) 350, 452, 876, 886
TaqI TCGA 3 cut(s) 80, 318, 438
TasI AATT 6 cut(s) 238, 376, 547, 614, 717, 940
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 3 cut(s) 215, 780, 946
Tru9I TTAA 3 cut(s) 215, 780, 946
TscAI CASTG 2 cut(s) 30, 78
TseFI GTSAC 4 cut(s) 25, 121, 521, 773
Tsp45I GTSAC 4 cut(s) 25, 121, 521, 773
TspDTI ATGAA 1 cut(s) 872
TspGWI ACGGA 3 cut(s) 30, 197, 915
TspRI CASTG 2 cut(s) 30, 78
XapI RAATTY 2 cut(s) 376, 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XmiI GTMKAC 2 cut(s) 325, 627
XmnI GAANNNNTTC 2 cut(s) 341, 687
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.