Rorug07G0154700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013788
Physical Location & Seq
Reverse (-)
12233592 .. 12234880
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0154700.1

Sequence Viewer

Length: 639 bp
ATGGCCGAGAAGAACCAGCAGACGTATTCATCAGCAAATGGCTACTCCAGAACTACTGACCCAGAATCATCTCCCTTCCAATCCGATGAGGAGCTCAAACGCCAGAAGAGAATCAAATTGTTCACCTACATTGGTATTTTCATTGTCTTTCAAATCATAGTGATGACCGTATTTGGTCTCACAGTGATGAAAGTTAAGACCCCGAAAGCCAGATGGGGCGAAATCAGTGTTGAAACCCTCAACTCTGTCCCTGCAACGCCTTCGTTCGATACAACCTTCGAAACCCAGATAAGGATCAAGAACACAAACTGGGGTCCTTACAAATTTGATGCAGGCACTGCCACATTTTTGTACCAAGGCGTGACTATTGGGAAAGTTGATATTCCTAAGAGCAAGGCCGGAATGCGTTCCACCAAGAAAATAGATGTTGAGGTGAGTTTGGATACTAATGCATTACCAAGCAGTTCGACTCTTGGAAGTGAATTGAGCAGCGGGGTGTTGACGCTAACTAGCCAAGTTCAATTGAAAGGAAAAGTTGAATTGATGCTCATAATGAAGAAAAATAAGAATGCTTCTATGGATTGCACCATAGCATTTGATCTGGCATCAAAGACGGTCAAAAGCTTAGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

9.41

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 97 - 196 6.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013788)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76360
fragaria_vesca FvH4_5g25310
malus_domestica MD06G1009600.v1.1 MD16G1285000.v1.1
prunus_persica Prupe.5G010900_v2.0.a1
pyrus_communis pycom06g00790 pycom16g25930
rosa_chinensis RchiOBHm_Chr7g0215531
rosa_laevigata RLG00000002650
rosa_multiflora Rmu_sc0000898.1_g000098
rosa_roxburghii Rroxscaffold_3G00244160
rosa_rugosa Rorug07G0154700
rosa_samantha Rh7AG290800 Rh7BG282900 Rh7CG310700 Rh7DG294400
rosa_wichuraiana Rw7G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 492
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 5 cut(s) 152, 233, 521, 526, 539
AluBI AGCT 2 cut(s) 94, 624
AluI AGCT 2 cut(s) 94, 624
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 2 cut(s) 3, 396
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 115, 445
AsuII TTCGAA 1 cut(s) 279
AvaII GGWCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 501
BccI CCATC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 243, 277
BciVI GTATCC 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 510
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 1 cut(s) 490
BlsI GCNGC 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 3 cut(s) 319, 534, 614
BmuI ACTGGG 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 501
BshFI GGCC 2 cut(s) 5, 398
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 3 cut(s) 408, 574, 635
BsnI GGCC 2 cut(s) 5, 398
Bso31I GGTCTC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 294, 598
BspACI CCGC 1 cut(s) 492
BspANI GGCC 2 cut(s) 5, 398
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 294, 598
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 169, 184, 616
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 387, 625
BstKTI GATC 2 cut(s) 297, 601
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 294, 598
BstMWI GCNNNNNNNGC 2 cut(s) 338, 630
BstV1I GCAGC 1 cut(s) 501
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 5, 398
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 189, 232, 336
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 352
CviJI RGCY 7 cut(s) 5, 42, 94, 209, 398, 513, 624
CviKI_1 RGCY 7 cut(s) 5, 42, 94, 209, 398, 513, 624
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 387, 625
DpnI GATC 2 cut(s) 296, 600
DpnII GATC 2 cut(s) 294, 598
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 355
FaiI YATR 4 cut(s) 158, 551, 578, 590
FaqI GGGAC 1 cut(s) 233
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 1 cut(s) 490
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 490
FspBI CTAG 1 cut(s) 510
GluI GCNGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 2 cut(s) 5, 398
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 511
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 3 cut(s) 65, 111, 469
HpaII CCGG 1 cut(s) 399
HphI GGTGA 2 cut(s) 115, 445
Hpy166II GTNNAC 2 cut(s) 123, 501
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 48, 298
Hpy8I GTNNAC 2 cut(s) 123, 501
HpyAV CCTTC 3 cut(s) 85, 270, 286
HpyCH4III ACNGT 3 cut(s) 169, 184, 616
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 254, 332, 452, 585, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 630
HpyF3I CTNAG 2 cut(s) 387, 625
HpySE526I ACGT 1 cut(s) 23
Kzo9I GATC 2 cut(s) 294, 598
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 3 cut(s) 319, 534, 614
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 296, 600
MboI GATC 2 cut(s) 294, 598
MboII GAAGA 3 cut(s) 22, 118, 568
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 116, 323, 482, 521, 539
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 3 cut(s) 82, 248, 424
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 161, 185
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 3 cut(s) 408, 574, 635
MwoI GCNNNNNNNGC 2 cut(s) 338, 630
NdeII GATC 2 cut(s) 294, 598
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 454
NspV TTCGAA 1 cut(s) 279
PctI GAATGC 3 cut(s) 408, 574, 635
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 65, 111
PkrI GCNGC 1 cut(s) 491
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 314
PspPPI RGGWCCY 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 161, 185
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 490
Sau3AI GATC 2 cut(s) 294, 598
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 1 cut(s) 463
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 26, 96, 128, 278, 435, 626
SfaNI GCATC 3 cut(s) 319, 534, 614
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 161, 185
Sse9I AATT 5 cut(s) 116, 323, 482, 521, 539
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 169, 184, 616
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 267, 279, 467
TasI AATT 5 cut(s) 116, 323, 482, 521, 539
TfiI GAWTC 2 cut(s) 65, 111
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 189, 232, 343
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 4 cut(s) 18, 130, 203, 569
TspRI CASTG 3 cut(s) 189, 232, 343
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.