pycom17g00770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016614
Physical Location & Seq
Forward (+)
567272 .. 567658
387 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGAGTCGAATCGCAAACGCAGAGGTTTCATGAAAGGCAAGTTGATGCCGTTCTACCGAGCTGCAAAACCTAATTCGACAACAAGTATGCAATATACTAGCATGGCCATGGCCAGCAGCAAGGTTAAGCCGAGCCAGGCTACTCCTTCGCCGGCTTACTCCGGGTTTATGGTTCACGGCCAGGATTATGTGATTGCAGCAGCTCAGCCTAAGCAGAAGGTTTCGTTTATTGTTCCTTCAGACGCTACAGATCATCATGCCAAAAACAGTCTCATTAAGCAGCAGTTTGATCACTACGGCGTAGGTGACGAGAGTGTCGATATGAAGGCTGCCAGCTATATTTCCTCGGTTCAAGAACGTTTCAAGCTCGAACGGATCAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.27

Weight (kDa)

9.8

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01960
fragaria_vesca FvH4_6g53750
prunus_persica Prupe.3G308000_v2.0.a1
pyrus_communis pycom17g00770
rosa_chinensis RchiOBHm_Chr2g0175871
rosa_laevigata RLG00000022361
rosa_multiflora Rmu_sc0003282.1_g000001
rosa_roxburghii Rroxscaffold_2G00076980
rosa_rugosa Rorug02G0588200
rosa_samantha Rh2AG667500 Rh2BG679000 Rh2CG641800 Rh2DG692500
rosa_wichuraiana Rw2G054710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AclI AACGTT 1 cut(s) 358
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 3 cut(s) 105, 111, 178
AcuI CTGAAG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 353, 364
AjnI CCWGG 2 cut(s) 135, 180
AluBI AGCT 4 cut(s) 62, 203, 336, 367
AluI AGCT 4 cut(s) 62, 203, 336, 367
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 383
AoxI GGCC 3 cut(s) 105, 111, 178
ApeKI GCWGC 6 cut(s) 62, 117, 197, 200, 280, 329
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 317
BalI TGGCCA 2 cut(s) 107, 113
BbvI GCAGC 6 cut(s) 49, 129, 209, 212, 292, 316
BceAI ACGGC 3 cut(s) 34, 193, 313
BciT130I CCWGG 2 cut(s) 137, 182
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 6 cut(s) 63, 118, 198, 201, 281, 330
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 6 cut(s) 64, 119, 199, 202, 282, 331
Bme1390I CCNGG 3 cut(s) 137, 163, 182
BmrFI CCNGG 3 cut(s) 137, 163, 182
BmsI GCATC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 108, 345
Bse118I RCCGGY 1 cut(s) 151
BseBI CCWGG 2 cut(s) 137, 182
BseDI CCNNGG 2 cut(s) 108, 345
BseMII CTCAG 1 cut(s) 218
BseXI GCAGC 6 cut(s) 49, 129, 209, 212, 292, 316
BshFI GGCC 3 cut(s) 107, 113, 180
BsiSI CCGG 2 cut(s) 152, 162
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 3 cut(s) 107, 113, 180
Bsp143I GATC 3 cut(s) 250, 289, 375
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 108
BspANI GGCC 3 cut(s) 107, 113, 180
BspCNI CTCAG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 108, 345
BssMI GATC 3 cut(s) 250, 289, 375
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 137, 182
Bst4CI ACNGT 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 115, 153, 334
BstDEI CTNAG 2 cut(s) 204, 210
BstDSI CCRYGG 1 cut(s) 108
BstKTI GATC 3 cut(s) 253, 292, 378
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 250, 289, 375
BstNI CCWGG 2 cut(s) 137, 182
BstSCI CCNGG 3 cut(s) 135, 161, 180
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 6 cut(s) 49, 129, 209, 212, 292, 316
BsuRI GGCC 3 cut(s) 107, 113, 180
BtgI CCRYGG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 115, 153, 334
CciI TCATGA 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 151
CseI GACGC 1 cut(s) 251
CviAII CATG 4 cut(s) 31, 103, 109, 257
DdeI CTNAG 2 cut(s) 204, 210
DpnI GATC 3 cut(s) 252, 291, 377
DpnII GATC 3 cut(s) 250, 289, 375
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 3 cut(s) 105, 111, 178
Eco130I CCWWGG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 135, 180
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 4 cut(s) 34, 106, 112, 260
FatI CATG 4 cut(s) 30, 102, 108, 256
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 6 cut(s) 63, 118, 198, 201, 281, 330
Fsp4HI GCNGC 6 cut(s) 63, 118, 198, 201, 281, 330
FspBI CTAG 1 cut(s) 99
GluI GCNGC 6 cut(s) 63, 118, 198, 201, 281, 330
HaeIII GGCC 3 cut(s) 107, 113, 180
HapII CCGG 2 cut(s) 152, 162
HgaI GACGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 34, 106, 112, 260
HinfI GANTC 2 cut(s) 5, 10
HpaII CCGG 2 cut(s) 152, 162
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 31, 353, 384
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 4 cut(s) 156, 211, 246, 319
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 3 cut(s) 65, 91, 197
HpyF3I CTNAG 2 cut(s) 204, 210
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 4 cut(s) 34, 106, 112, 260
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 3 cut(s) 250, 289, 375
LpnPI CCDG 8 cut(s) 122, 127, 149, 165, 167, 175, 194, 346
Lsp1109I GCAGC 6 cut(s) 49, 129, 209, 212, 292, 316
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 252, 291, 377
MboI GATC 3 cut(s) 250, 289, 375
MlsI TGGCCA 2 cut(s) 107, 113
MluCI AATT 1 cut(s) 73
MluNI TGGCCA 2 cut(s) 107, 113
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 17, 355
Mox20I TGGCCA 2 cut(s) 107, 113
MroNI GCCGGC 1 cut(s) 151
MscI TGGCCA 2 cut(s) 107, 113
MseI TTAA 2 cut(s) 126, 276
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 107, 113
MspI CCGG 2 cut(s) 152, 162
MspR9I CCNGG 3 cut(s) 137, 163, 182
MvaI CCWGG 2 cut(s) 137, 182
NaeI GCCGGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 250, 289, 375
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 4 cut(s) 34, 106, 112, 260
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 305
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 6 cut(s) 64, 119, 199, 202, 282, 331
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 135, 180
PspGI CCWGG 2 cut(s) 135, 180
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 126, 276
SatI GCNGC 6 cut(s) 63, 118, 198, 201, 281, 330
Sau3AI GATC 3 cut(s) 250, 289, 375
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 137, 163, 182
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 135, 161, 180
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 361
TaqI TCGA 4 cut(s) 8, 77, 318, 369
TasI AATT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 126, 276
Tru9I TTAA 2 cut(s) 126, 276
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 6 cut(s) 62, 117, 197, 200, 280, 329
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 19, 47, 338
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.