pycom17g02160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015478
Physical Location & Seq
Reverse (-)
1357900 .. 1360059
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGCGATGGCGTCCTGGAATCTGAGCCTGAGTCCACGTCCAAAGCTGGTTCAAGTCTCCTGCAGAAAGAGGGAGAAGAATCGAGATAACTATGACCCTTACAAAGTCATCGAAATTACTCCTCCGCCCAAGAACCTCGGCGTTCGTTGCTTCCCATCCAACCTACATTGTGGGGACAGTGTGACAATAGAAGGCCAAACATACACAATCTCAGCCGTAACTCATCGGTACCAGCTCCGGAAGGGGAAGTATGAACCGAGCGAGAAGAGGCTCGATGTTTTGTCAACAGCGAGATACATCTTAAATTTGTACCTAGATAATTTGCTAGAACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

9.37

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40500 AT5G40500
fragaria_vesca FvH4_6g51480 FvH4_6g51480
malus_domestica MD17G1026500.v1.1
prunus_persica Prupe.3G292200_v2.0.a1
pyrus_communis pycom17g02160
rosa_chinensis RchiOBHm_Chr2g0173121
rosa_laevigata RLG00000022160
rosa_roxburghii Rroxscaffold_2G00079220
rosa_rugosa Rorug02G0565500
rosa_samantha Rh2AG645500 Rh2BG656200 Rh2CG621300 Rh2DG669600
rosa_wichuraiana Rw2G053010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 230, 311
AgsI TTSAA 1 cut(s) 53
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 46, 235
AluI AGCT 2 cut(s) 46, 235
Alw26I GTCTC 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 304
Asp718I GGTACC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 228
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 314, 326
BfmI CTRYAG 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 155
BseMII CTCAG 3 cut(s) 14, 20, 225
BseRI GAGGAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 237
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 3 cut(s) 15, 21, 224
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 23, 29, 211
BstF5I GGATG 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 184
Csp6I GTAC 2 cut(s) 229, 310
CviJI RGCY 6 cut(s) 27, 46, 195, 215, 235, 271
CviKI_1 RGCY 6 cut(s) 27, 46, 195, 215, 235, 271
CviQI GTAC 2 cut(s) 229, 310
DdeI CTNAG 3 cut(s) 23, 29, 211
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 14
FaiI YATR 3 cut(s) 93, 202, 252
FaqI GGGAC 1 cut(s) 188
FokI GGATG 1 cut(s) 142
FspBI CTAG 2 cut(s) 314, 326
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 3 cut(s) 19, 31, 79
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 35, 285
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 83, 238, 336
Hpy8I GTNNAC 2 cut(s) 35, 285
HpyAV CCTTC 2 cut(s) 185, 235
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 3 cut(s) 23, 29, 211
HpySE526I ACGT 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 237
KpnI GGTACC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 28, 32, 41, 73, 245, 251
MaeI CTAG 2 cut(s) 314, 326
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 181, 217
MboII GAAGA 2 cut(s) 88, 277
MluCI AATT 3 cut(s) 114, 304, 319
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 4 cut(s) 63, 132, 146, 261
MroI TCCGGA 1 cut(s) 237
MseI TTAA 1 cut(s) 302
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 19, 79
PfoI TCCNGGA 1 cut(s) 14
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 65
RsaI GTAC 2 cut(s) 230, 311
RsaNI GTAC 2 cut(s) 229, 310
SaqAI TTAA 1 cut(s) 302
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 16
SetI ASST 6 cut(s) 40, 48, 138, 165, 237, 315
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 3 cut(s) 114, 304, 319
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 314, 326
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 82, 111, 273
TasI AATT 3 cut(s) 114, 304, 319
TfiI GAWTC 2 cut(s) 19, 79
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 184
XapI RAATTY 1 cut(s) 304
XspI CTAG 2 cut(s) 314, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.