pycom17g03880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016647
Physical Location & Seq
Reverse (-)
2652478 .. 2653317
840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
ATGGTTGCGGTGCAGGTTGCTGATGGGAAGAGTGCAGGGACTGCAGGCTTTAGTGAAGTTATGTCCAAATGTCTCCCCTCCCCAAGCAAGCTTAAGACATGTCTCTCTGATCATCACAGCTGGACCCTGAAAAGTGAAGCACAAATCCCACAAAATCCACATGTAAAATTTGAAACATCTGAAAAAACCAAACACATCGATCACATGGAGAAGTGGAGAGAGAGTGGGAGAGTAAACACAGTTTTGTTCACAGCAGGAGCAGCTGTGGCAATGGCATGTTTAAAACGTGTTATATTAATGGTGTTTCTCATGGAGCAATGGCGGGCGTCGGTTTTCCTTCTGCTCAACCTCGTCCTCCTAGCCATTGTCTTCACCTCCATTTCGTCCGGGACCTCAAATGTCGATCGGAATCGAGATTGCGAAAACGACAATGGCGAAGGGATCAAAAGCAACGGAGGAGGAAATAAGAGAAGAGAATATCGGTGCCAATCTGCTCCTCAAGTGGTTGAAGAAGTCAAGGAATGTGAGGATGAAATGTGCAAGAGCTCAGCGCGCGGCGGCGGTGAGAGCGAGCAAGAGCGGGATGAAGACGATACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTCGGAAGCTGTCGGAGGAGGATTTGAATGAGAGAGTGGAAGCTTTCATCGTTATGTTCCGGCAGCATTTGGTTTCCGATGCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

240

Amino Acids

26.84

Weight (kDa)

4.94

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016647)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28420
fragaria_vesca FvH4_6g49720
prunus_persica Prupe.3G275600_v2.0.a1
pyrus_communis pycom17g03880
rosa_chinensis RchiOBHm_Chr2g0169751
rosa_laevigata RLG00000021899
rosa_multiflora Rmu_ssc0000389.1_g000030
rosa_roxburghii Rroxscaffold_2G00081820
rosa_rugosa Rorug02G0542700.1
rosa_samantha Rh2AG614900 Rh2BG627200 Rh2CG596600 Rh2DG638000
rosa_wichuraiana Rw2G050980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 580
AccII CGCG 2 cut(s) 553, 555
AciI CCGC 6 cut(s) 8, 322, 555, 558, 561, 580
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 326
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 3 cut(s) 98, 160, 286
AgsI TTSAA 3 cut(s) 173, 509, 655
AluBI AGCT 6 cut(s) 91, 120, 263, 546, 637, 671
AluI AGCT 6 cut(s) 91, 120, 263, 546, 637, 671
Alw21I GWGCWC 1 cut(s) 548
Alw26I GTCTC 2 cut(s) 77, 107
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 260, 691
ApoI RAATTY 1 cut(s) 167
AseI ATTAAT 1 cut(s) 296
AspLEI GCGC 2 cut(s) 553, 555
AspS9I GGNCC 2 cut(s) 123, 390
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 364, 575
AvaII GGWCC 2 cut(s) 123, 390
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 548
BbsI GAAGAC 2 cut(s) 361, 594
Bbv12I GWGCWC 1 cut(s) 548
BbvI GCAGC 2 cut(s) 272, 703
BccI CCATC 1 cut(s) 17
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 77, 107
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 4 cut(s) 261, 556, 559, 692
BlpI GCTNAGC 1 cut(s) 547
BlsI GCNGC 4 cut(s) 262, 557, 560, 693
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 123, 390
BmgT120I GGNCC 2 cut(s) 123, 390
BmiI GGNNCC 3 cut(s) 125, 391, 485
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 697
BpiI GAAGAC 2 cut(s) 361, 594
Bpu1102I GCTNAGC 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 326
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 249, 279
Bse3DI GCAATG 2 cut(s) 276, 323
Bse8I GATNNNNATC 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 198
BseGI GGATG 2 cut(s) 535, 589
BseJI GATNNNNATC 1 cut(s) 408
BseMI GCAATG 2 cut(s) 276, 323
BseMII CTCAG 1 cut(s) 561
BsePI GCGCGC 1 cut(s) 551
BseXI GCAGC 2 cut(s) 272, 703
BsgI GTGCAG 2 cut(s) 32, 54
Bsh1236I CGCG 2 cut(s) 553, 555
Bsh1285I CGRYCG 1 cut(s) 406
BshNI GGYRCC 1 cut(s) 483
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 548
BsiSI CCGG 2 cut(s) 387, 688
BslFI GGGAC 2 cut(s) 52, 403
BsmAI GTCTC 2 cut(s) 77, 107
BsmFI GGGAC 2 cut(s) 52, 403
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 4 cut(s) 109, 199, 403, 441
Bsp1720I GCTNAGC 1 cut(s) 547
BspACI CCGC 6 cut(s) 8, 322, 555, 558, 561, 580
BspCNI CTCAG 1 cut(s) 560
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 2 cut(s) 553, 555
BspLI GGNNCC 3 cut(s) 125, 391, 485
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 483
BspTI CTTAAG 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 276, 323
BssHII GCGCGC 1 cut(s) 551
BssMI GATC 4 cut(s) 109, 199, 403, 441
BssNI GRCGYC 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 23, 466
BstACI GRCGYC 1 cut(s) 326
BstAFI CTTAAG 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 5 cut(s) 46, 89, 324, 553, 572
BstDEI CTNAG 1 cut(s) 547
BstF5I GGATG 2 cut(s) 535, 589
BstFNI CGCG 2 cut(s) 553, 555
BstHHI GCGC 2 cut(s) 553, 555
BstKTI GATC 4 cut(s) 112, 202, 406, 444
BstMAI GTCTC 2 cut(s) 77, 107
BstMBI GATC 4 cut(s) 109, 199, 403, 441
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 5 cut(s) 41, 260, 266, 552, 567
BstNSI RCATGY 3 cut(s) 102, 164, 279
BstSCI CCNGG 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 2 cut(s) 553, 555
BstV1I GCAGC 2 cut(s) 272, 703
BstV2I GAAGAC 2 cut(s) 361, 594
Bsu15I ATCGAT 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 2 cut(s) 535, 589
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 5 cut(s) 46, 89, 324, 553, 572
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 553, 555
Cfr13I GGNCC 2 cut(s) 123, 390
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 315
CviAII CATG 5 cut(s) 99, 161, 205, 276, 310
CviJI RGCY 8 cut(s) 48, 91, 120, 263, 362, 546, 637, 671
CviKI_1 RGCY 8 cut(s) 48, 91, 120, 263, 362, 546, 637, 671
DdeI CTNAG 1 cut(s) 547
DpnI GATC 4 cut(s) 111, 201, 405, 443
DpnII GATC 4 cut(s) 109, 199, 403, 441
DraI TTTAAA 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 23, 466
EarI CTCTTC 2 cut(s) 23, 466
Ecl136II GAGCTC 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 123, 390
Eco53kI GAGCTC 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 548
FaeI CATG 5 cut(s) 102, 164, 208, 279, 313
FaiI YATR 8 cut(s) 62, 100, 162, 206, 277, 293, 311, 683
FaqI GGGAC 2 cut(s) 52, 403
FatI CATG 5 cut(s) 98, 160, 204, 275, 309
FauI CCCGC 2 cut(s) 315, 573
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 261, 556, 559, 692
FokI GGATG 2 cut(s) 542, 596
FriOI GRGCYC 1 cut(s) 548
Fsp4HI GCNGC 4 cut(s) 261, 556, 559, 692
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 552, 554
GluI GCNGC 4 cut(s) 261, 556, 559, 692
HapII CCGG 2 cut(s) 387, 688
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 553, 555
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 5 cut(s) 102, 164, 208, 279, 313
Hin6I GCGC 2 cut(s) 551, 553
HinP1I GCGC 2 cut(s) 551, 553
HindIII AAGCTT 2 cut(s) 89, 669
HinfI GANTC 1 cut(s) 409
HpaII CCGG 2 cut(s) 387, 688
HphI GGTGA 2 cut(s) 364, 575
Hpy166II GTNNAC 2 cut(s) 235, 249
Hpy188I TCNGA 6 cut(s) 109, 181, 408, 633, 643, 706
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 2 cut(s) 235, 249
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 347, 431
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 5 cut(s) 13, 35, 44, 540, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 260, 266, 552, 567
HpyF3I CTNAG 1 cut(s) 547
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 5 cut(s) 102, 164, 208, 279, 313
HspAI GCGC 2 cut(s) 551, 553
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 109, 199, 403, 441
LmnI GCTCC 3 cut(s) 257, 313, 499
LpnPI CCDG 7 cut(s) 21, 30, 106, 140, 240, 400, 701
Lsp1109I GCAGC 2 cut(s) 272, 703
LweI GCATC 1 cut(s) 697
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 286
MalI GATC 4 cut(s) 111, 201, 405, 443
MbiI CCGCTC 1 cut(s) 580
MboI GATC 4 cut(s) 109, 199, 403, 441
MboII GAAGA 5 cut(s) 40, 361, 483, 521, 599
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 2 cut(s) 167, 715
MmeI TCCRAC 1 cut(s) 621
MseI TTAA 3 cut(s) 93, 281, 296
MslI CAYNNNNRTG 1 cut(s) 680
MspA1I CMGCKG 2 cut(s) 120, 263
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 387, 688
MspR9I CCNGG 1 cut(s) 388
MvnI CGCG 2 cut(s) 553, 555
MwoI GCNNNNNNNGC 5 cut(s) 41, 260, 266, 552, 567
NciI CCSGG 1 cut(s) 388
NdeII GATC 4 cut(s) 109, 199, 403, 441
NlaIII CATG 5 cut(s) 102, 164, 208, 279, 313
NlaIV GGNNCC 3 cut(s) 125, 391, 485
NspI RCATGY 3 cut(s) 102, 164, 279
PauI GCGCGC 1 cut(s) 551
PciI ACATGT 2 cut(s) 98, 160
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 386
PkrI GCNGC 4 cut(s) 262, 557, 560, 693
Ple19I CGATCG 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 390
PscI ACATGT 2 cut(s) 98, 160
PshBI ATTAAT 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 548
Psp5II RGGWCCY 1 cut(s) 390
PspN4I GGNNCC 3 cut(s) 125, 391, 485
PspPI GGNCC 2 cut(s) 123, 390
PspPPI RGGWCCY 1 cut(s) 390
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 41
PteI GCGCGC 1 cut(s) 551
PvuI CGATCG 1 cut(s) 406
PvuII CAGCTG 2 cut(s) 120, 263
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 548
SaqAI TTAA 3 cut(s) 93, 281, 296
SatI GCNGC 4 cut(s) 261, 556, 559, 692
Sau3AI GATC 4 cut(s) 109, 199, 403, 441
Sau96I GGNCC 2 cut(s) 123, 390
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 2 cut(s) 123, 390
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 92, 498
SmoI CTYRAG 2 cut(s) 92, 498
Sse9I AATT 2 cut(s) 167, 715
SsiI CCGC 6 cut(s) 8, 322, 555, 558, 561, 580
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 198, 402, 412
TasI AATT 2 cut(s) 167, 715
TauI GCSGC 2 cut(s) 558, 561
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 3 cut(s) 93, 281, 296
Tru9I TTAA 3 cut(s) 93, 281, 296
TseI GCWGC 2 cut(s) 260, 691
TspDTI ATGAA 3 cut(s) 546, 600, 664
TspGWI ACGGA 2 cut(s) 468, 611
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 123, 390
VspI ATTAAT 1 cut(s) 296
XapI RAATTY 1 cut(s) 167
XceI RCATGY 3 cut(s) 102, 164, 279
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.