pycom17g07570

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014348
Physical Location & Seq
Forward (+)
5510300 .. 5511842
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGGATACATACAGGAAGCACGTGAGAATCACGTGAAGAAGAAGGTTGAAGAAGCATTGCGGAGCAAAATGAAGCACAAGGCGCTGCAGGAGTGCAAGGATTTGGCGTCAAAGTACGCCGAGTGCTCCTACGGCAGAACCATATCGGTCGTCTGGCAGTGCCGGCAGCAAGCCAAGGAATTGAACGAATGCCTTCACCAATTCACCAACGATGACGTATTGGAGGAAATGAAAAGAGCGTACATGCTTCAACAAGACGGGAAAGTGCCTGCAAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

94

Amino Acids

10.89

Weight (kDa)

8.68

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 21 - 82 5.7e-15 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16060
fragaria_vesca FvH4_6g45250
malus_domestica MD07G1095900.v1.1 MD17G1105000.v1.1
prunus_persica Prupe.3G238900_v2.0.a1 Prupe.3G238900_v2.0.a1
pyrus_communis pycom09g01120 pycom17g07570
rosa_chinensis RchiOBHm_Chr2g0162971
rosa_multiflora Rmu_sc0011038.1_g000003
rosa_roxburghii Rroxscaffold_2G00087650
rosa_rugosa Rorug02G0499600
rosa_samantha Rh2AG565800 Rh2BG578400 Rh2CG548200 Rh2DG588600
rosa_wichuraiana Rw2G046850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AcvI CACGTG 2 cut(s) 23, 34
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 116, 242
AgsI TTSAA 3 cut(s) 50, 184, 251
Alw21I GWGCWC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 85, 166
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 188, 196
BbrPI CACGTG 2 cut(s) 23, 34
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 72, 178
BceAI ACGGC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 2 cut(s) 86, 167
BlsI GCNGC 2 cut(s) 87, 168
BsaAI YACGTR 2 cut(s) 23, 34
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 72, 178
Bsh1285I CGRYCG 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 128
BspACI CCGC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 107
BstBAI YACGTR 2 cut(s) 23, 34
BstC8I GCNNGC 3 cut(s) 164, 171, 270
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 82, 132, 163
BstNSI RCATGY 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 72, 178
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 164, 171, 270
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 162
CseI GACGC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 115, 241
CviAII CATG 1 cut(s) 244
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
CviQI GTAC 2 cut(s) 115, 241
Eco130I CCWWGG 1 cut(s) 174
Eco72I CACGTG 2 cut(s) 23, 34
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 11, 143, 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 86, 167
Fsp4HI GCNGC 2 cut(s) 86, 167
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 86, 167
HaeII RGCGCY 1 cut(s) 86
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 163
HphI GGTGA 2 cut(s) 188, 196
Hpy188I TCNGA 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 37, 203
HpyCH4IV ACGT 3 cut(s) 22, 33, 216
HpyCH4V TGCA 3 cut(s) 88, 96, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 132, 163
HpySE526I ACGT 3 cut(s) 22, 33, 216
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 63, 131
LpnPI CCDG 3 cut(s) 74, 139, 176
Lsp1109I GCAGC 2 cut(s) 72, 178
MaeII ACGT 3 cut(s) 22, 33, 216
MboII GAAGA 3 cut(s) 49, 52, 62
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 179, 200
MnlI CCTC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 192
MspI CCGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 82, 132, 163
NaeI GCCGGC 1 cut(s) 164
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 145
NspI RCATGY 1 cut(s) 247
PctI GAATGC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 87, 168
PmaCI CACGTG 2 cut(s) 23, 34
PmlI CACGTG 2 cut(s) 23, 34
Ppu21I YACGTR 2 cut(s) 23, 34
PspCI CACGTG 2 cut(s) 23, 34
PstI CTGCAG 1 cut(s) 90
RsaI GTAC 2 cut(s) 116, 242
RsaNI GTAC 2 cut(s) 115, 241
SatI GCNGC 2 cut(s) 86, 167
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 25, 36, 48, 219
SfcI CTRYAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 179, 200
SsiI CCGC 1 cut(s) 61
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 3 cut(s) 25, 36, 219
TaqII GACCGA 1 cut(s) 136
TasI AATT 2 cut(s) 179, 200
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 164
TseI GCWGC 2 cut(s) 85, 166
TspDTI ATGAA 2 cut(s) 86, 245
TspRI CASTG 1 cut(s) 164
XceI RCATGY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.