pycom17g08320

Protein THYLAKOID FORMATION1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011451
Physical Location & Seq
Forward (+)
6181859 .. 6183251
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGATCCTGTGTTCGCTCTTGGTTTTGTCACTGTATACGATCAGCTCATGGATGGATACCCAAGCGATGAGCGATCGAGTGGTAATCTTCCAAGCGTACATTAAAGCATTAAATGAGGACCCAGAGCAATACAGTTTCCATGCTAAGCACTACAGAACTGATGCACAAAAGTTGGAAGAGTGGGCCCGGGTGCAAACTTCCAGTTCATTAGTGGAGTTTCTATCCAGAGAAGGAGAAGTTGAGGCAGCACTGAAGGACATTGCAGAGAGGGCAGCAGATAAAAAAATTTTTAGCTACAGTCGTTTCTTTGCTATTGGGCTTTTTCGTCTTCTTGAGGTGGCAAAAGCAACTGAACCAACAGTGTTAGAAAAGTTATGTGCAGCCTTAAACATTGACAAAAGAAGTGTGGACCGGGACCTTGATGTGTACCGCAATCTGCTTTCCAAGCTGGTTCAGGCCAAAGAATTGCTAACGGAATATGTGGCCAGGGAGAAGAAGAAAAGAGAAGAACGGGTGGAAACACAGAAGGCCAGCGAAACAGTTGCGAAATGTCTGGGGGACTATAACCACGTTAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006605 GO:0006612 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009707 GO:0009743 GO:0009756 GO:0009889 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010119 GO:0010182 GO:0010207 GO:0010319 GO:0015031 GO:0015833 GO:0015979 GO:0015994 GO:0015996 GO:0016020 GO:0016043 GO:0017038 GO:0019222 GO:0019439 GO:0019684 GO:0019866 GO:0019867 GO:0022607 GO:0023052 GO:0031090 GO:0031323 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0034622 GO:0034641 GO:0042170 GO:0042221 GO:0042440 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045038 GO:0045184 GO:0046149 GO:0046483 GO:0046700 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051187 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055035 GO:0055085 GO:0061024 GO:0065002 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071322 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072657 GO:0080134 GO:0090150 GO:0098588 GO:0098805 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902456 GO:1902458 GO:1903426 GO:2000070 GO:2000377
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ThylakoidFormat

Protein Analysis

194

Amino Acids

22.21

Weight (kDa)

6.35

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThylakoidFormat PF11264 23 - 171 3.6e-36 Thylakoid formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 35
AciI CCGC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 2 cut(s) 98, 428
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 3 cut(s) 45, 294, 448
AluI AGCT 3 cut(s) 45, 294, 448
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 183, 456, 483, 528
ApaI GGGCCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 245, 272, 380
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 5 cut(s) 118, 183, 184, 409, 415
AsuC2I CCSGG 3 cut(s) 187, 188, 413
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 3 cut(s) 118, 409, 415
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 257, 284, 392
BccI CCATC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BciT130I CCWGG 1 cut(s) 487
BciVI GTATCC 1 cut(s) 49
BcnI CCSGG 3 cut(s) 187, 188, 413
BfmI CTRYAG 2 cut(s) 151, 295
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 3 cut(s) 246, 273, 381
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 3 cut(s) 247, 274, 382
Bme1390I CCNGG 4 cut(s) 187, 188, 413, 487
Bme18I GGWCC 3 cut(s) 118, 409, 415
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 5 cut(s) 118, 183, 184, 409, 415
BmiI GGNNCC 3 cut(s) 120, 185, 416
BmrFI CCNGG 4 cut(s) 187, 188, 413, 487
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 3 cut(s) 187, 188, 413
BsaJI CCNNGG 2 cut(s) 186, 486
Bse1I ACTGG 2 cut(s) 201, 577
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 186, 486
BseGI GGATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 201, 577
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 257, 284, 392
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 4 cut(s) 185, 458, 485, 530
BsiEI CGRYCG 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 187, 412
BslFI GGGAC 2 cut(s) 428, 572
BsmFI GGGAC 2 cut(s) 428, 572
BsnI GGCC 4 cut(s) 185, 458, 485, 530
BsoBI CYCGRG 1 cut(s) 186
Bsp120I GGGCCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 3, 39, 73
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 1 cut(s) 430
BspANI GGCC 4 cut(s) 185, 458, 485, 530
BspLI GGNNCC 3 cut(s) 120, 185, 416
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 201, 577
BssECI CCNNGG 2 cut(s) 186, 486
BssMI GATC 3 cut(s) 3, 39, 73
BssNAI GTATAC 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 5 cut(s) 33, 134, 299, 361, 541
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 6, 42, 76
BstMBI GATC 3 cut(s) 3, 39, 73
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 269, 445
BstNI CCWGG 1 cut(s) 487
BstSCI CCNGG 4 cut(s) 185, 186, 411, 485
BstSFI CTRYAG 2 cut(s) 151, 295
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 257, 284, 392
BstV2I GAAGAC 1 cut(s) 320
BstZ17I GTATAC 1 cut(s) 36
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 4 cut(s) 185, 458, 485, 530
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 29, 248, 366
Cac8I GCNNGC 1 cut(s) 532
Cfr13I GGNCC 5 cut(s) 118, 183, 184, 409, 415
Cfr9I CCCGGG 1 cut(s) 186
Csp6I GTAC 2 cut(s) 97, 427
CviAII CATG 2 cut(s) 48, 140
CviQI GTAC 2 cut(s) 97, 427
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 5, 41, 75
DpnII GATC 3 cut(s) 3, 39, 73
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 118, 409, 415
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 186
EcoO109I RGGNCCY 2 cut(s) 118, 415
EcoRII CCWGG 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 2 cut(s) 51, 143
FaiI YATR 6 cut(s) 36, 49, 141, 376, 480, 564
FaqI GGGAC 2 cut(s) 428, 572
FatI CATG 2 cut(s) 47, 139
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 246, 273, 381
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 246, 273, 381
GluI GCNGC 3 cut(s) 246, 273, 381
HaeIII GGCC 4 cut(s) 185, 458, 485, 530
HapII CCGG 2 cut(s) 187, 412
Hin1II CATG 2 cut(s) 51, 143
HpaII CCGG 2 cut(s) 187, 412
Hpy166II GTNNAC 3 cut(s) 36, 409, 427
Hpy188III TCNNGA 2 cut(s) 225, 332
Hpy8I GTNNAC 3 cut(s) 36, 409, 427
HpyAV CCTTC 3 cut(s) 224, 247, 520
HpyCH4III ACNGT 5 cut(s) 33, 134, 299, 361, 541
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 4 cut(s) 164, 193, 263, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 445
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 2 cut(s) 51, 143
Kzo9I GATC 3 cut(s) 3, 39, 73
Lsp1109I GCAGC 3 cut(s) 257, 284, 392
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 27
MalI GATC 3 cut(s) 5, 41, 75
MboI GATC 3 cut(s) 3, 39, 73
MboII GAAGA 6 cut(s) 79, 188, 320, 505, 508, 518
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 2 cut(s) 285, 464
MluNI TGGCCA 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 4 cut(s) 109, 235, 261, 328
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 3 cut(s) 102, 110, 386
Msp20I TGGCCA 1 cut(s) 485
MspI CCGG 2 cut(s) 187, 412
MspR9I CCNGG 4 cut(s) 187, 188, 413, 487
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 2 cut(s) 269, 445
NciI CCSGG 3 cut(s) 187, 188, 413
NdeII GATC 3 cut(s) 3, 39, 73
NlaIII CATG 2 cut(s) 51, 143
NlaIV GGNNCC 3 cut(s) 120, 185, 416
NmuCI GTSAC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 247, 274, 382
Ple19I CGATCG 1 cut(s) 76
PpuMI RGGWCCY 2 cut(s) 118, 415
Psp5II RGGWCCY 2 cut(s) 118, 415
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 3 cut(s) 120, 185, 416
PspOMI GGGCCC 1 cut(s) 183
PspPI GGNCC 5 cut(s) 118, 183, 184, 409, 415
PspPPI RGGWCCY 2 cut(s) 118, 415
PvuI CGATCG 1 cut(s) 76
RsaI GTAC 2 cut(s) 98, 428
RsaNI GTAC 2 cut(s) 97, 427
SaqAI TTAA 3 cut(s) 102, 110, 386
SatI GCNGC 3 cut(s) 246, 273, 381
Sau3AI GATC 3 cut(s) 3, 39, 73
Sau96I GGNCC 5 cut(s) 118, 183, 184, 409, 415
ScrFI CCNGG 4 cut(s) 187, 188, 413, 487
SduI GDGCHC 1 cut(s) 187
SetI ASST 6 cut(s) 47, 296, 339, 420, 450, 573
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 2 cut(s) 151, 295
SinI GGWCC 3 cut(s) 118, 409, 415
SmaI CCCGGG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 285, 464
SsiI CCGC 1 cut(s) 430
StyD4I CCNGG 4 cut(s) 185, 186, 411, 485
TaaI ACNGT 5 cut(s) 33, 134, 299, 361, 541
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 285, 464
Tru1I TTAA 3 cut(s) 102, 110, 386
Tru9I TTAA 3 cut(s) 102, 110, 386
TscAI CASTG 3 cut(s) 36, 255, 366
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 3 cut(s) 245, 272, 380
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 488
TspMI CCCGGG 1 cut(s) 186
TspRI CASTG 3 cut(s) 36, 255, 366
VpaK11BI GGWCC 3 cut(s) 118, 409, 415
XapI RAATTY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.