pycom17g11950

Protein PAT1 homolog 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
9749442 .. 9750971
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1530 bp
ATGGACTTATTTCCCCACAATTACTGTCAGCTCAGCAGCAGCAGCTACAACAGCAGAGATTGCACCACTCGGTTCAGCCATCTATGGCCCATTTTGCTGCAATGCAGTCTCAGTTTTATGGTACTCATCCTTCTTCATCACATAAGTCAATGCATGGGTTGTCCGACGTACGAGATCGATAGACCGAAAAGAGGAAAACAACGTTTTTCTCAAGGCTCTGATGCTGGTAGTCAGAAAAGTGAGAGTGGGTGGATCCAGTTCAGGTCTAAGCACATGACATCTGAAGAGATAGAGAGTATTCTTAAAATGCAGCATGCAGCAACACATAGCAATGACCCCTATATTGATGATTACTACCACCAGGCAAGTCTTTCCAAAAAAGCAGCTGGCTTGCGGTTGAAACATCCTTTTTGCCCATCTCATCTTAGAGAGTCCCCCTCCCGAGGTCGTAATAGTACTGATCAGCATACTCATAGTTCTGTTGATGCTCTTGGGAGAATTCCCCTCGCTTCCATACGTAGGCCTCGCCCCCTCCTTGAAGTTGATCCTCCCCCTGGTTCTGGCGACGGCAAACAGGTCTCTGAGAAGCCTCTGGAGCAGGAACCCATGCTTGCTGCTAGAATTGCTATTGAGGATGGCCTTTGTCTCCTTCTTGATATTGATGACATTGATCGACTGCTACAACATGGTCAGCCCCAAGATGGTGGGGTTCAACTCAGGCGAAGGCGGCAAATACTGCTAGAAGGGTTGGCGGCATCGCTTCAGCTTGTTGACCCACTTGGTAAAGGCAGCCACTCAGCGGGGCTGGCTCCAAAGGATGACCTTGTGTTCCTACGTATAGTTTCTCTTCCTAAGGGGCGCAAGCTCCTTTCTAGGTTTATTCAGCTTCTCTTCCCTGGTAGCGAGCTTGCCCGTATTGTCTGTATGACAGTTTTCCGTCATTTAAGGTTTTTGTATGGTGGTCTACCCTCTGATCCTGGAGCTGCTGAGACAACTACTAATCTTGCAAAGACAGTTTCTACATGTATAAATGGTGTGGATCTTCGTGCATTAAGTGCTTGTCTTGTTGCAGTAGTTTGTTCATCAGAGCAGCCACCACTTCGACCCCTTGGAAGCCCTGCTGGAGATGGGGCCACTATTATTCTAAAATCTGTTCTTGAAAGGGCAACTGTACTCTTAAGTGACCCTCATGCTGCTGGAAGCTGTAGCATTTCTAACCGCACCCTTTGGCAGGCATCCTTTGATGAATTTTTTGGTCTGCTCACCAAGTATTGCCTGAGTAAGTATGAAACTATAGTACAATCAATATTTACACAGAGTCAGCAAAGTGCAGAAGTTATTGGTTCAGAGGCCACCAGGGCGATACATCGTGAAATGCCTGTGGAGCTTCTGCGTGCTAGTCTTCCTCACACAGATGAGCATCAGCGGAAGCTTTTGTCAGATTTTGCTCATCGATCAATGCCCATTTCTGGTCTTAATGCCCATGGCGGGAGCGGAGGTCAAATGAACTCTGAATCAGTGAGGGGATAA

Protein Analysis

510

Amino Acids

55.97

Weight (kDa)

8.37

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010360)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1494
AccI GTMKAC 1 cut(s) 964
AciI CCGC 8 cut(s) 394, 727, 752, 800, 1219, 1426, 1488, 1494
AclI AACGTT 1 cut(s) 202
AclWI GGATC 5 cut(s) 247, 260, 539, 968, 1047
AcsI RAATTY 2 cut(s) 498, 1247
AcuI CTGAAG 2 cut(s) 303, 746
AfaI GTAC 5 cut(s) 123, 170, 457, 1173, 1299
AflII CTTAAG 1 cut(s) 1177
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 4 cut(s) 400, 539, 713, 1160
AjnI CCWGG 5 cut(s) 360, 553, 895, 976, 1355
Alw26I GTCTC 4 cut(s) 113, 583, 650, 983
AlwI GGATC 5 cut(s) 247, 260, 539, 968, 1047
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 5 cut(s) 86, 521, 637, 1131, 1350
ApoI RAATTY 2 cut(s) 498, 1247
AspLEI GCGC 1 cut(s) 861
AspS9I GGNCC 2 cut(s) 87, 1131
AsuHPI GGTGA 1 cut(s) 1255
AvaI CYCGRG 1 cut(s) 441
AxyI CCTNAGG 1 cut(s) 852
BamHI GGATCC 1 cut(s) 252
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BbsI GAAGAC 1 cut(s) 1394
BccI CCATC 5 cut(s) 87, 424, 629, 695, 1121
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 5 cut(s) 362, 555, 897, 978, 1357
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 4 cut(s) 113, 583, 650, 983
BfaI CTAG 4 cut(s) 618, 740, 873, 1398
BfmI CTRYAG 2 cut(s) 1204, 1293
BfrI CTTAAG 1 cut(s) 1177
BglI GCCNNNNNGGC 1 cut(s) 1358
BlpI GCTNAGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 5 cut(s) 362, 555, 897, 978, 1357
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 87, 1131
BmiI GGNNCC 4 cut(s) 254, 603, 810, 1132
BmrFI CCNGG 5 cut(s) 362, 555, 897, 978, 1357
BmsI GCATC 5 cut(s) 211, 475, 764, 1244, 1429
BpiI GAAGAC 1 cut(s) 1394
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 3 cut(s) 614, 999, 1143
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 195
Bsa29I ATCGAT 2 cut(s) 177, 1453
BsaAI YACGTR 2 cut(s) 518, 836
BsaBI GATNNNNATC 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 6 cut(s) 442, 553, 895, 1108, 1356, 1483
BsaXI ACNNNNNCTCC 2 cut(s) 1483, 1513
Bse1I ACTGG 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 852
Bse3DI GCAATG 2 cut(s) 107, 337
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 5 cut(s) 362, 555, 897, 978, 1357
BseCI ATCGAT 2 cut(s) 177, 1453
BseDI CCNNGG 6 cut(s) 442, 553, 895, 1108, 1356, 1483
BseGI GGATG 5 cut(s) 126, 403, 640, 823, 1235
BseJI GATNNNNATC 1 cut(s) 1419
BseMI GCAATG 2 cut(s) 107, 337
BseMII CTCAG 7 cut(s) 46, 124, 573, 730, 810, 978, 1268
BseNI ACTGG 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 1350
BshFI GGCC 5 cut(s) 88, 523, 639, 1133, 1352
BshVI ATCGAT 2 cut(s) 177, 1453
BsiHKCI CYCGRG 1 cut(s) 441
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 418
BsmAI GTCTC 4 cut(s) 113, 583, 650, 983
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 5 cut(s) 88, 523, 639, 1133, 1352
Bso31I GGTCTC 1 cut(s) 583
BsoBI CYCGRG 1 cut(s) 441
Bsp143I GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 1483
BspACI CCGC 8 cut(s) 394, 727, 752, 800, 1219, 1426, 1488, 1494
BspANI GGCC 5 cut(s) 88, 523, 639, 1133, 1352
BspCNI CTCAG 7 cut(s) 45, 123, 574, 729, 809, 979, 1269
BspDI ATCGAT 2 cut(s) 177, 1453
BspLI GGNNCC 4 cut(s) 254, 603, 810, 1132
BspPI GGATC 5 cut(s) 247, 260, 539, 968, 1047
BspTI CTTAAG 1 cut(s) 1177
BspTNI GGTCTC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 1494
BsrDI GCAATG 2 cut(s) 107, 337
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 6 cut(s) 442, 553, 895, 1108, 1356, 1483
BssMI GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
BssT1I CCWWGG 2 cut(s) 1108, 1483
Bst2UI CCWGG 5 cut(s) 362, 555, 897, 978, 1357
Bst4CI ACNGT 4 cut(s) 26, 931, 1015, 1171
Bst6I CTCTTC 3 cut(s) 279, 852, 896
BstAFI CTTAAG 1 cut(s) 1177
BstAPI GCANNNNNTGC 3 cut(s) 60, 736, 1055
BstBAI YACGTR 2 cut(s) 518, 836
BstDSI CCRYGG 1 cut(s) 1483
BstENI CCTNNNNNAGG 1 cut(s) 1229
BstF5I GGATG 5 cut(s) 126, 403, 640, 823, 1235
BstHHI GCGC 1 cut(s) 861
BstKTI GATC 8 cut(s) 177, 255, 463, 547, 673, 976, 1042, 1457
BstMAI GTCTC 4 cut(s) 113, 583, 650, 983
BstMBI GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
BstNI CCWGG 5 cut(s) 362, 555, 897, 978, 1357
BstNSI RCATGY 2 cut(s) 317, 1026
BstSCI CCNGG 5 cut(s) 360, 553, 895, 976, 1355
BstSFI CTRYAG 2 cut(s) 1204, 1293
BstSNI TACGTA 2 cut(s) 518, 836
BstV2I GAAGAC 1 cut(s) 1394
BstX2I RGATCY 2 cut(s) 252, 1039
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 2 cut(s) 252, 1039
Bsu15I ATCGAT 2 cut(s) 177, 1453
Bsu36I CCTNAGG 1 cut(s) 852
BsuRI GGCC 5 cut(s) 88, 523, 639, 1133, 1352
BsuTUI ATCGAT 2 cut(s) 177, 1453
BtgI CCRYGG 1 cut(s) 1483
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 5 cut(s) 126, 403, 640, 823, 1235
BtsIMutI CAGTG 1 cut(s) 1524
CfoI GCGC 1 cut(s) 861
Cfr13I GGNCC 2 cut(s) 87, 1131
ClaI ATCGAT 2 cut(s) 177, 1453
Csp6I GTAC 5 cut(s) 122, 169, 456, 1172, 1298
CviAII CATG 8 cut(s) 154, 274, 314, 607, 686, 1023, 1190, 1484
CviQI GTAC 5 cut(s) 122, 169, 456, 1172, 1298
DpnI GATC 8 cut(s) 176, 254, 462, 546, 672, 975, 1041, 1456
DpnII GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
Eam1104I CTCTTC 3 cut(s) 279, 852, 896
EarI CTCTTC 3 cut(s) 279, 852, 896
Eco105I TACGTA 2 cut(s) 518, 836
Eco130I CCWWGG 2 cut(s) 1108, 1483
Eco147I AGGCCT 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 303, 746
Eco81I CCTNAGG 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 1229
EcoRI GAATTC 1 cut(s) 498
EcoRII CCWGG 5 cut(s) 360, 553, 895, 976, 1355
EcoT14I CCWWGG 2 cut(s) 1108, 1483
EcoT22I ATGCAT 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 1108, 1483
FaeI CATG 8 cut(s) 157, 277, 317, 610, 689, 1026, 1193, 1487
FaqI GGGAC 1 cut(s) 418
FatI CATG 8 cut(s) 153, 273, 313, 606, 685, 1022, 1189, 1483
FauI CCCGC 2 cut(s) 793, 1481
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 964
FokI GGATG 5 cut(s) 113, 390, 647, 830, 1222
FspBI CTAG 4 cut(s) 618, 740, 873, 1398
GlaI GCGC 1 cut(s) 860
GsuI CTGGAG 3 cut(s) 614, 999, 1143
HaeIII GGCC 5 cut(s) 88, 523, 639, 1133, 1352
HhaI GCGC 1 cut(s) 861
Hin1II CATG 8 cut(s) 157, 277, 317, 610, 689, 1026, 1193, 1487
Hin6I GCGC 1 cut(s) 859
HinP1I GCGC 1 cut(s) 859
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 1430
HinfI GANTC 3 cut(s) 431, 1318, 1514
HphI GGTGA 1 cut(s) 1255
Hpy166II GTNNAC 2 cut(s) 772, 965
Hpy188III TCNNGA 5 cut(s) 441, 593, 653, 1157, 1370
Hpy8I GTNNAC 2 cut(s) 772, 965
Hpy99I CGWCG 2 cut(s) 169, 569
HpyAV CCTTC 4 cut(s) 140, 659, 717, 737
HpyCH4III ACNGT 4 cut(s) 26, 931, 1015, 1171
HpyCH4IV ACGT 4 cut(s) 167, 202, 517, 835
HpySE526I ACGT 4 cut(s) 167, 202, 517, 835
Hsp92II CATG 8 cut(s) 157, 277, 317, 610, 689, 1026, 1193, 1487
HspAI GCGC 1 cut(s) 859
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
LmnI GCTCC 6 cut(s) 595, 814, 870, 980, 1384, 1491
LweI GCATC 5 cut(s) 211, 475, 764, 1244, 1429
MaeI CTAG 4 cut(s) 618, 740, 873, 1398
MaeII ACGT 4 cut(s) 167, 202, 517, 835
MaeIII GTNAC 1 cut(s) 1181
MalI GATC 8 cut(s) 176, 254, 462, 546, 672, 975, 1041, 1456
MbiI CCGCTC 1 cut(s) 1494
MboI GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
MboII GAAGA 6 cut(s) 125, 296, 839, 883, 1034, 1394
MflI RGATCY 2 cut(s) 252, 1039
MluCI AATT 4 cut(s) 19, 498, 621, 1247
MlyI GAGTC 2 cut(s) 440, 1327
MmeI TCCRAC 1 cut(s) 188
Mph1103I ATGCAT 1 cut(s) 155
MseI TTAA 5 cut(s) 303, 944, 1052, 1178, 1476
MslI CAYNNNNRTG 2 cut(s) 330, 1413
MspA1I CMGCKG 3 cut(s) 386, 800, 1426
MspCI CTTAAG 1 cut(s) 1177
MspR9I CCNGG 5 cut(s) 362, 555, 897, 978, 1357
MvaI CCWGG 5 cut(s) 362, 555, 897, 978, 1357
NcoI CCATGG 1 cut(s) 1483
NdeII GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
NlaIII CATG 8 cut(s) 157, 277, 317, 610, 689, 1026, 1193, 1487
NlaIV GGNNCC 4 cut(s) 254, 603, 810, 1132
NmuCI GTSAC 1 cut(s) 1181
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 2 cut(s) 317, 1026
PaeI GCATGC 1 cut(s) 317
PceI AGGCCT 1 cut(s) 523
PciI ACATGT 1 cut(s) 1022
PfeI GAWTC 1 cut(s) 1514
Pfl23II CGTACG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 976
PleI GAGTC 2 cut(s) 439, 1326
PpsI GAGTC 2 cut(s) 439, 1326
Ppu21I YACGTR 2 cut(s) 518, 836
PscI ACATGT 1 cut(s) 1022
Psp1406I AACGTT 1 cut(s) 202
Psp6I CCWGG 5 cut(s) 360, 553, 895, 976, 1355
PspGI CCWGG 5 cut(s) 360, 553, 895, 976, 1355
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 4 cut(s) 254, 603, 810, 1132
PspPI GGNCC 2 cut(s) 87, 1131
PsuI RGATCY 2 cut(s) 252, 1039
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 5 cut(s) 123, 170, 457, 1173, 1299
RsaNI GTAC 5 cut(s) 122, 169, 456, 1172, 1298
RseI CAYNNNNRTG 2 cut(s) 330, 1413
SaqAI TTAA 5 cut(s) 303, 944, 1052, 1178, 1476
Sau3AI GATC 8 cut(s) 174, 252, 460, 544, 670, 973, 1039, 1454
Sau96I GGNCC 2 cut(s) 87, 1131
ScaI AGTACT 1 cut(s) 457
SchI GAGTC 2 cut(s) 440, 1327
ScrFI CCNGG 5 cut(s) 362, 555, 897, 978, 1357
SfaNI GCATC 5 cut(s) 211, 475, 764, 1244, 1429
SfcI CTRYAG 2 cut(s) 1204, 1293
SmiMI CAYNNNNRTG 2 cut(s) 330, 1413
SmlI CTYRAG 2 cut(s) 210, 1177
SmoI CTYRAG 2 cut(s) 210, 1177
SnaBI TACGTA 2 cut(s) 518, 836
SphI GCATGC 1 cut(s) 317
Sse9I AATT 4 cut(s) 19, 498, 621, 1247
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 8 cut(s) 394, 727, 752, 800, 1219, 1426, 1488, 1494
SspI AATATT 1 cut(s) 1308
SspMI CTAG 4 cut(s) 618, 740, 873, 1398
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 5 cut(s) 360, 553, 895, 976, 1355
StyI CCWWGG 2 cut(s) 1108, 1483
TaaI ACNGT 4 cut(s) 26, 931, 1015, 1171
TaiI ACGT 4 cut(s) 170, 205, 520, 838
TaqI TCGA 4 cut(s) 177, 673, 1102, 1453
TaqII GACCGA 1 cut(s) 199
TasI AATT 4 cut(s) 19, 498, 621, 1247
TatI WGTACW 3 cut(s) 455, 1171, 1297
TauI GCSGC 2 cut(s) 730, 755
TfiI GAWTC 1 cut(s) 1514
Tru1I TTAA 5 cut(s) 303, 944, 1052, 1178, 1476
Tru9I TTAA 5 cut(s) 303, 944, 1052, 1178, 1476
TscAI CASTG 1 cut(s) 1524
TseFI GTSAC 1 cut(s) 1181
Tsp45I GTSAC 1 cut(s) 1181
TspDTI ATGAA 5 cut(s) 125, 1071, 1260, 1302, 1520
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 1 cut(s) 1524
Vha464I CTTAAG 1 cut(s) 1177
XagI CCTNNNNNAGG 1 cut(s) 1229
XapI RAATTY 2 cut(s) 498, 1247
XceI RCATGY 2 cut(s) 317, 1026
XmiI GTMKAC 1 cut(s) 964
XspI CTAG 4 cut(s) 618, 740, 873, 1398
ZrmI AGTACT 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.