pycom17g13980

Xylosyltransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016897
Physical Location & Seq
Reverse (-)
11559293 .. 11561167
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
ATGAGAACATCAAACATTTCTTCGTGGTGCTCGGGTTATCTTCTATGGATCCCAGCACTTTTGGTTACTTTAGTCTTGTTGGGAGCAATTTCAAGATCATCTCCCAATGTGTTTTCTAGATATGGAAACAAATACCAACTCTCAGTGGGAGTGCCATTGAAGGGGAATGGCAACCCCCCTGTCTTTGCTTATTGGATATGTGGAACTGAAGGAGAAAGTGAGAGGATTTTGAGGCTTTTGAAGGCAATATATCACCCGAGAAATCGGTATTTGCTGCAGCTTGATTCATGTTCGTCGGATTATGATAGAGGGCAGCTAGCTCTCTCTGTTCAAGCCGAAGAAGTTTTTCGATATTTTGGAAATGTTTATGTTGTTGGGAAAAGTTTTGCCCTCAACCAGATGGGGTCTTCTGCTCTTGCTGCCACACTTCATGCTGCAGCATTGCATCTAAAGCTCAGTACAGATTGGGACTGGTTCATCACTTTAAGTGCTTCTGACTATCCCCTCATGAATCAGGATGATCTGCTCCATGCTTTCACTTTATTGCCAAGGAATACCAATTTTATACATTTTACAAACAAGACTGGCTGGAAAGAGCAAACAGATCGAATCGTTAATGACCCTAACTTATATCTTCAAGAGGTTGCTCCACTTTTGTATGCTGTAGAGAAGAGAACCATGCCAGATGCTTTCAAAATCTTTGGAGGTTCGCCTTGGACGATTTTAACCAGAGATTTCATGGAGTACTGTGTAAAAGGCTGGGATAACTTTCCCAGGAAGTTACTGATGTACCTCAGCAATGTGCCCTACCCTCTTGAATCCTACTTCCACACAATTATCTGCAGCTCATCTGAGTTCAAAAACTCTGTAGTGAATAATGACCTAAGGTACATTCTTTGGGACACGTCTGCACTCGGAAAAGCAAAAGTCCTTAACATGTCACACTATGATCAAATGTTAGCAAGTCGAGCGGCCTTTGCTAGACCGTTTCAAACAGATGATGATCCAGTGCTAAACAAGATCGATGAGAGTGTTTTGAATCGGACTTCGAAAGGGTTGGTTCCGGGAGAATGGTGCCCTGGCATAGGGAGAAGTAAGAGCTTAGAGAATTCAACACCTGATAAGGAAGAGTTGTGTCCAAGTTGGGGCAACATTAACCATGTCACCCCGGGTCCTCGTGGCGTTAGTCTCCAAGAATTTTTGGCTAAGCTTGCTGTAGAAGGAAGATTTACAACCGGTCACTGCCAAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00532 ko00534 ko01100 map00532 map00534 map01100
Pfam Domains
Protein Families
Branch

Protein Analysis

419

Amino Acids

47.21

Weight (kDa)

7.13

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 62 - 303 1.4e-55 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016897)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37130
malus_domestica MD09G1161300.v1.1 MD17G1147100.v1.1
prunus_persica Prupe.3G020200_v2.0.a1
pyrus_communis pycom09g07980 pycom17g13980
rosa_chinensis RchiOBHm_Chr2g0149691
rosa_laevigata RLG00000020438
rosa_multiflora Rmu_sc0013937.1_g000003
rosa_roxburghii Rroxscaffold_2G00097790
rosa_rugosa Rorug02G0414700
rosa_samantha Rh2BG486500 Rh2DG495800
rosa_wichuraiana Rw2G038710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1074
AccBSI CCGCTC 1 cut(s) 971
AciI CCGC 1 cut(s) 971
AclWI GGATC 3 cut(s) 43, 56, 998
AcsI RAATTY 2 cut(s) 1108, 1196
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 4 cut(s) 460, 746, 791, 890
AfiI CCNNNNNNNGG 3 cut(s) 161, 1085, 1145
AflIII ACRYGT 2 cut(s) 903, 936
AgeI ACCGGT 1 cut(s) 1235
AjiI CACGTC 1 cut(s) 906
AjnI CCWGG 2 cut(s) 773, 1078
AluBI AGCT 7 cut(s) 280, 316, 320, 454, 846, 1101, 1210
AluI AGCT 7 cut(s) 280, 316, 320, 454, 846, 1101, 1210
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 1193
AlwI GGATC 3 cut(s) 43, 56, 998
Ama87I CYCGRG 3 cut(s) 31, 256, 1168
AoxI GGCC 1 cut(s) 972
ApeKI GCWGC 7 cut(s) 274, 277, 313, 419, 434, 437, 843
ApoI RAATTY 2 cut(s) 1108, 1196
AsiGI ACCGGT 1 cut(s) 1235
Asp700I GAANNNNTTC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 1172
AsuC2I CCSGG 3 cut(s) 1065, 1169, 1170
AsuHPI GGTGA 2 cut(s) 245, 1156
AsuII TTCGAA 1 cut(s) 1049
AsuNHI GCTAGC 1 cut(s) 316
AvaI CYCGRG 3 cut(s) 31, 256, 1168
AvaII GGWCC 1 cut(s) 1172
AxyI CCTNAGG 1 cut(s) 884
BaeGI GKGCMC 2 cut(s) 807, 1079
BaeI ACNNNNGTAYC 2 cut(s) 773, 806
BamHI GGATCC 1 cut(s) 48
BanI GGYRCC 1 cut(s) 1074
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 794
BbvI GCAGC 7 cut(s) 261, 289, 325, 406, 421, 449, 855
BccI CCATC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 2 cut(s) 775, 1080
BclI TGATCA 1 cut(s) 949
BcnI CCSGG 3 cut(s) 1065, 1169, 1170
BcoDI GTCTC 1 cut(s) 1193
BfaI CTAG 3 cut(s) 117, 317, 981
BfmI CTRYAG 6 cut(s) 275, 435, 663, 841, 867, 1215
BisI GCNGC 8 cut(s) 275, 278, 314, 420, 435, 438, 844, 972
BlpI GCTNAGC 1 cut(s) 1206
BlsI GCNGC 8 cut(s) 276, 279, 315, 421, 436, 439, 845, 973
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 5 cut(s) 775, 1065, 1080, 1169, 1170
Bme18I GGWCC 1 cut(s) 1172
BmeT110I CYCGRG 3 cut(s) 31, 256, 1168
BmgBI CACGTC 1 cut(s) 906
BmgT120I GGNCC 1 cut(s) 1172
BmiI GGNNCC 4 cut(s) 50, 1062, 1076, 1173
BmrFI CCNGG 5 cut(s) 775, 1065, 1080, 1169, 1170
BmsI GCATC 2 cut(s) 454, 676
BmtI GCTAGC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 794
Bpu1102I GCTNAGC 1 cut(s) 1206
Bpu14I TTCGAA 1 cut(s) 1049
BpuMI CCSGG 3 cut(s) 1065, 1169, 1170
Bsa29I ATCGAT 1 cut(s) 1023
BsaBI GATNNNNATC 1 cut(s) 1002
BsaJI CCNNGG 6 cut(s) 548, 713, 773, 1078, 1167, 1168
BsaWI WCCGGW 1 cut(s) 1235
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 1085, 1145
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 3 cut(s) 476, 589, 1007
Bse21I CCTNAGG 1 cut(s) 884
Bse3DI GCAATG 2 cut(s) 440, 805
Bse8I GATNNNNATC 1 cut(s) 1002
BseBI CCWGG 2 cut(s) 775, 1080
BseCI ATCGAT 1 cut(s) 1023
BseDI CCNNGG 6 cut(s) 548, 713, 773, 1078, 1167, 1168
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 3 cut(s) 161, 1085, 1145
BseMI GCAATG 2 cut(s) 440, 805
BseMII CTCAG 4 cut(s) 156, 469, 808, 843
BseNI ACTGG 3 cut(s) 476, 589, 1007
BseSI GKGCMC 2 cut(s) 807, 1079
BseXI GCAGC 7 cut(s) 261, 289, 325, 406, 421, 449, 855
BseYI CCCAGC 2 cut(s) 52, 759
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 1 cut(s) 974
BshNI GGYRCC 1 cut(s) 1074
BshTI ACCGGT 1 cut(s) 1235
BshVI ATCGAT 1 cut(s) 1023
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 3 cut(s) 31, 256, 1168
BsiSI CCGG 3 cut(s) 1064, 1169, 1236
BslFI GGGAC 2 cut(s) 482, 914
BslI CCNNNNNNNGG 3 cut(s) 161, 1085, 1145
BsmAI GTCTC 1 cut(s) 1193
BsmFI GGGAC 2 cut(s) 482, 914
BsnI GGCC 1 cut(s) 974
BsoBI CYCGRG 3 cut(s) 31, 256, 1168
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 3 cut(s) 32, 807, 1079
Bsp143I GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
Bsp1720I GCTNAGC 1 cut(s) 1206
BspACI CCGC 1 cut(s) 971
BspANI GGCC 1 cut(s) 974
BspCNI CTCAG 4 cut(s) 155, 468, 807, 844
BspDI ATCGAT 1 cut(s) 1023
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 50, 1062, 1076, 1173
BspMAI CTGCAG 3 cut(s) 279, 439, 845
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 43, 56, 998
BspT104I TTCGAA 1 cut(s) 1049
BspT107I GGYRCC 1 cut(s) 1074
BsrBI CCGCTC 1 cut(s) 971
BsrDI GCAATG 2 cut(s) 440, 805
BsrFI RCCGGY 1 cut(s) 1235
BsrI ACTGG 3 cut(s) 476, 589, 1007
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 6 cut(s) 548, 713, 773, 1078, 1167, 1168
BssMI GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
BssSI CACGAG 1 cut(s) 1176
BssT1I CCWWGG 2 cut(s) 548, 713
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 2 cut(s) 775, 1080
Bst4CI ACNGT 2 cut(s) 749, 987
Bst6I CTCTTC 2 cut(s) 665, 1122
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 318, 1212
BstDEI CTNAG 7 cut(s) 142, 455, 794, 852, 884, 1102, 1206
BstENI CCTNNNNNAGG 1 cut(s) 1083
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 7 cut(s) 51, 98, 523, 607, 952, 1006, 1023
BstMAI GTCTC 1 cut(s) 1193
BstMBI GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 419, 451, 968, 977, 1211
BstNI CCWGG 2 cut(s) 775, 1080
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 5 cut(s) 773, 1063, 1078, 1167, 1168
BstSFI CTRYAG 6 cut(s) 275, 435, 663, 841, 867, 1215
BstSLI GKGCMC 2 cut(s) 807, 1079
BstV1I GCAGC 7 cut(s) 261, 289, 325, 406, 421, 449, 855
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 1023
Bsu36I CCTNAGG 1 cut(s) 884
BsuRI GGCC 1 cut(s) 974
BsuTUI ATCGAT 1 cut(s) 1023
BtrI CACGTC 1 cut(s) 906
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 4 cut(s) 150, 1014, 1240, 1252
Cac8I GCNNGC 2 cut(s) 318, 1212
CciI TCATGA 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 1 cut(s) 1172
Cfr9I CCCGGG 1 cut(s) 1168
ClaI ATCGAT 1 cut(s) 1023
Csp6I GTAC 4 cut(s) 459, 745, 790, 889
CspAI ACCGGT 1 cut(s) 1235
CviAII CATG 8 cut(s) 288, 431, 508, 530, 679, 739, 937, 1160
CviQI GTAC 4 cut(s) 459, 745, 790, 889
DdeI CTNAG 7 cut(s) 142, 455, 794, 852, 884, 1102, 1206
DpnI GATC 7 cut(s) 50, 97, 522, 606, 951, 1005, 1022
DpnII GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
Eam1104I CTCTTC 2 cut(s) 665, 1122
EarI CTCTTC 2 cut(s) 665, 1122
Eco130I CCWWGG 2 cut(s) 548, 713
Eco47I GGWCC 1 cut(s) 1172
Eco57I CTGAAG 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 3 cut(s) 31, 256, 1168
EcoNI CCTNNNNNAGG 1 cut(s) 1083
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 773, 1078
EcoT14I CCWWGG 2 cut(s) 548, 713
ErhI CCWWGG 2 cut(s) 548, 713
FaeI CATG 8 cut(s) 291, 434, 511, 533, 682, 742, 940, 1163
FaqI GGGAC 2 cut(s) 482, 914
FatI CATG 8 cut(s) 287, 430, 507, 529, 678, 738, 936, 1159
FbaI TGATCA 1 cut(s) 949
Fnu4HI GCNGC 8 cut(s) 275, 278, 314, 420, 435, 438, 844, 972
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 8 cut(s) 275, 278, 314, 420, 435, 438, 844, 972
FspBI CTAG 3 cut(s) 117, 317, 981
GluI GCNGC 8 cut(s) 275, 278, 314, 420, 435, 438, 844, 972
GsaI CCCAGC 2 cut(s) 56, 763
HaeIII GGCC 1 cut(s) 974
HapII CCGG 3 cut(s) 1064, 1169, 1236
Hin1II CATG 8 cut(s) 291, 434, 511, 533, 682, 742, 940, 1163
HindIII AAGCTT 1 cut(s) 1208
HinfI GANTC 5 cut(s) 284, 511, 609, 818, 1039
HpaII CCGG 3 cut(s) 1064, 1169, 1236
HphI GGTGA 2 cut(s) 245, 1156
Hpy188I TCNGA 5 cut(s) 298, 496, 853, 917, 1044
Hpy188III TCNNGA 6 cut(s) 93, 117, 508, 515, 638, 815
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 4 cut(s) 154, 203, 235, 1214
HpyCH4III ACNGT 2 cut(s) 749, 987
HpyCH4IV ACGT 1 cut(s) 905
HpyCH4V TGCA 5 cut(s) 277, 437, 445, 843, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 419, 451, 968, 977, 1211
HpyF3I CTNAG 7 cut(s) 142, 455, 794, 852, 884, 1102, 1206
HpySE526I ACGT 1 cut(s) 905
Hsp92II CATG 8 cut(s) 291, 434, 511, 533, 682, 742, 940, 1163
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
LmnI GCTCC 3 cut(s) 83, 531, 652
Lsp1109I GCAGC 7 cut(s) 261, 289, 325, 406, 421, 449, 855
LweI GCATC 2 cut(s) 454, 676
MaeI CTAG 3 cut(s) 117, 317, 981
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 5 cut(s) 64, 780, 939, 1162, 1238
MalI GATC 7 cut(s) 50, 97, 522, 606, 951, 1005, 1022
MbiI CCGCTC 1 cut(s) 971
MboI GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
MboII GAAGA 8 cut(s) 12, 32, 350, 399, 626, 682, 1139, 1236
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 3 cut(s) 32, 807, 1079
MluCI AATT 5 cut(s) 87, 559, 834, 1108, 1196
MmeI TCCRAC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 5 cut(s) 485, 615, 725, 933, 1155
MspI CCGG 3 cut(s) 1064, 1169, 1236
MspR9I CCNGG 5 cut(s) 775, 1065, 1080, 1169, 1170
MvaI CCWGG 2 cut(s) 775, 1080
MwoI GCNNNNNNNGC 5 cut(s) 419, 451, 968, 977, 1211
NciI CCSGG 3 cut(s) 1065, 1169, 1170
NdeII GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 8 cut(s) 291, 434, 511, 533, 682, 742, 940, 1163
NlaIV GGNNCC 4 cut(s) 50, 1062, 1076, 1173
NmuCI GTSAC 3 cut(s) 939, 1162, 1238
NspI RCATGY 1 cut(s) 940
NspV TTCGAA 1 cut(s) 1049
PagI TCATGA 1 cut(s) 507
PciI ACATGT 1 cut(s) 936
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 5 cut(s) 284, 511, 609, 818, 1039
PfoI TCCNGGA 1 cut(s) 1063
PinAI ACCGGT 1 cut(s) 1235
PkrI GCNGC 8 cut(s) 276, 279, 315, 421, 436, 439, 845, 973
PpuMI RGGWCCY 1 cut(s) 1172
PscI ACATGT 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 2 cut(s) 773, 1078
PspFI CCCAGC 2 cut(s) 52, 759
PspGI CCWGG 2 cut(s) 773, 1078
PspN4I GGNNCC 4 cut(s) 50, 1062, 1076, 1173
PspPI GGNCC 1 cut(s) 1172
PspPPI RGGWCCY 1 cut(s) 1172
PstI CTGCAG 3 cut(s) 279, 439, 845
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 4 cut(s) 460, 746, 791, 890
RsaNI GTAC 4 cut(s) 459, 745, 790, 889
SaqAI TTAA 5 cut(s) 485, 615, 725, 933, 1155
SatI GCNGC 8 cut(s) 275, 278, 314, 420, 435, 438, 844, 972
Sau3AI GATC 7 cut(s) 48, 95, 520, 604, 949, 1003, 1020
Sau96I GGNCC 1 cut(s) 1172
ScaI AGTACT 1 cut(s) 746
ScrFI CCNGG 5 cut(s) 775, 1065, 1080, 1169, 1170
SduI GDGCHC 3 cut(s) 32, 807, 1079
SfaNI GCATC 2 cut(s) 454, 676
SfcI CTRYAG 6 cut(s) 275, 435, 663, 841, 867, 1215
SfuI TTCGAA 1 cut(s) 1049
SinI GGWCC 1 cut(s) 1172
SmaI CCCGGG 1 cut(s) 1170
Sse9I AATT 5 cut(s) 87, 559, 834, 1108, 1196
SsiI CCGC 1 cut(s) 971
SspMI CTAG 3 cut(s) 117, 317, 981
StyD4I CCNGG 5 cut(s) 773, 1063, 1078, 1167, 1168
StyI CCWWGG 2 cut(s) 548, 713
TaaI ACNGT 2 cut(s) 749, 987
TaiI ACGT 1 cut(s) 908
TaqI TCGA 5 cut(s) 349, 607, 967, 1023, 1049
TasI AATT 5 cut(s) 87, 559, 834, 1108, 1196
TatI WGTACW 2 cut(s) 458, 744
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 5 cut(s) 284, 511, 609, 818, 1039
Tru1I TTAA 5 cut(s) 485, 615, 725, 933, 1155
Tru9I TTAA 5 cut(s) 485, 615, 725, 933, 1155
TscAI CASTG 3 cut(s) 150, 1014, 1247
TseFI GTSAC 3 cut(s) 939, 1162, 1238
TseI GCWGC 7 cut(s) 274, 277, 313, 419, 434, 437, 843
Tsp45I GTSAC 3 cut(s) 939, 1162, 1238
TspDTI ATGAA 5 cut(s) 276, 419, 466, 524, 727
TspMI CCCGGG 1 cut(s) 1168
TspRI CASTG 3 cut(s) 150, 1014, 1247
VpaK11BI GGWCC 1 cut(s) 1172
XagI CCTNNNNNAGG 1 cut(s) 1083
XapI RAATTY 2 cut(s) 1108, 1196
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmaI CCCGGG 1 cut(s) 1168
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 3 cut(s) 117, 317, 981
ZrmI AGTACT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.