pycom17g14780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017698
Physical Location & Seq
Reverse (-)
12517213 .. 12517984
772 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGCTAGTGGGATCGGGAAGGTGTGATAAACAACGCGTTCAGAATCAAATCATTTCTAGTGGGATCCAAGGAAATAGTAAGCTCCAGACATGTGGCGGCCCATATAAATGCCGTGTGTCAAATGCTTCATTTGTTCATCACTCGCTCATTTGTAGAAAAATAATGAAGCAGCAGCAGGGAAGACTAGTGTTTGGATGGTGGTCAAGAGCTGGAGGCATTACTGGCCCTAGTGCACCAGGTTGCCCAAACATGGCGGAGCTGCCGCGTTTTATGACAGTCAAAGCGCCCAACCGCGCCGCCGTTCATGGACATAGGCTGCCTATCCCTGGCGTCATTGATGAGGAACAAGTACAGAAGGTGATAGAGAAAGGGAAAGAGGAGAAAGAAGAAAAGAGGCGGGTGGTGGAGAAGGCCGTCGACTCCAAACTCAACGGCAGCCGCCGCGAAGGCGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.75

Weight (kDa)

9.93

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36000 FvH4_6g36000
malus_domestica MD17G1155000.v1.1
pyrus_communis pycom09g08930 pycom17g14780
rosa_multiflora Rmu_sc0001516.1_g000038 Rmu_sc0012028.1_g000008
rosa_rugosa Rorug02G0403500
rosa_samantha Rh2AG461600 Rh2BG475300 Rh2DG483900
rosa_wichuraiana Rw2G037680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 417
AccII CGCG 4 cut(s) 36, 265, 294, 444
AciI CCGC 8 cut(s) 96, 254, 263, 292, 297, 397, 439, 442
AclWI GGATC 3 cut(s) 19, 58, 71
AcyI GRCGYC 2 cut(s) 330, 453
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 250, 326
AflIII ACRYGT 2 cut(s) 34, 89
AhlI ACTAGT 1 cut(s) 184
AjnI CCWGG 2 cut(s) 235, 325
AluBI AGCT 3 cut(s) 82, 209, 259
AluI AGCT 3 cut(s) 82, 209, 259
Alw21I GWGCWC 1 cut(s) 235
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 3 cut(s) 19, 58, 71
AoxI GGCC 3 cut(s) 97, 223, 411
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 5 cut(s) 169, 172, 259, 316, 435
AspLEI GCGC 2 cut(s) 286, 296
AspS9I GGNCC 2 cut(s) 98, 224
AsuHPI GGTGA 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 5 cut(s) 181, 184, 246, 303, 447
BccI CCATC 1 cut(s) 189
BceAI ACGGC 4 cut(s) 96, 284, 398, 448
BciT130I CCWGG 2 cut(s) 237, 327
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 4 cut(s) 5, 57, 185, 228
BfoI RGCGCY 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 237, 327
BmgT120I GGNCC 2 cut(s) 98, 224
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 237, 327
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 2 cut(s) 68, 231
BsaHI GRCGYC 2 cut(s) 330, 453
BsaJI CCNNGG 2 cut(s) 67, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 326
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 237, 327
BseDI CCNNGG 2 cut(s) 67, 325
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 250, 326
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 5 cut(s) 181, 184, 246, 303, 447
Bsh1236I CGCG 4 cut(s) 36, 265, 294, 444
BshFI GGCC 3 cut(s) 99, 225, 413
BsiHKAI GWGCWC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 250, 326
BsnI GGCC 3 cut(s) 99, 225, 413
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 11, 63
BspACI CCGC 8 cut(s) 96, 254, 263, 292, 297, 397, 439, 442
BspANI GGCC 3 cut(s) 99, 225, 413
BspFNI CGCG 4 cut(s) 36, 265, 294, 444
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 3 cut(s) 19, 58, 71
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 67, 325
BssMI GATC 2 cut(s) 11, 63
BssNI GRCGYC 2 cut(s) 330, 453
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 237, 327
Bst4CI ACNGT 1 cut(s) 277
BstACI GRCGYC 2 cut(s) 330, 453
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 4 cut(s) 36, 265, 294, 444
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 296
BstKTI GATC 2 cut(s) 14, 66
BstMBI GATC 2 cut(s) 11, 63
BstMWI GCNNNNNNNGC 3 cut(s) 222, 441, 447
BstNI CCWGG 2 cut(s) 237, 327
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 235, 325
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 4 cut(s) 36, 265, 294, 444
BstV1I GCAGC 5 cut(s) 181, 184, 246, 303, 447
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 3 cut(s) 99, 225, 413
BtsCI GGATG 1 cut(s) 200
CfoI GCGC 2 cut(s) 286, 296
Cfr13I GGNCC 2 cut(s) 98, 224
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 235
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 90, 250, 305
CviJI RGCY 8 cut(s) 82, 99, 209, 225, 259, 316, 413, 438
CviKI_1 RGCY 8 cut(s) 82, 99, 209, 225, 259, 316, 413, 438
CviQI GTAC 1 cut(s) 350
DpnI GATC 2 cut(s) 13, 65
DpnII GATC 2 cut(s) 11, 63
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 235, 325
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 93, 253, 308
FaiI YATR 7 cut(s) 91, 103, 105, 251, 272, 306, 312
FatI CATG 3 cut(s) 89, 249, 304
FauI CCCGC 1 cut(s) 390
FblI GTMKAC 1 cut(s) 417
FokI GGATG 1 cut(s) 207
FspBI CTAG 4 cut(s) 5, 57, 185, 228
GlaI GCGC 2 cut(s) 285, 295
GsuI CTGGAG 2 cut(s) 68, 231
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 99, 225, 413
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 286, 296
Hin1I GRCGYC 2 cut(s) 330, 453
Hin1II CATG 3 cut(s) 93, 253, 308
Hin6I GCGC 2 cut(s) 284, 294
HinP1I GCGC 2 cut(s) 284, 294
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 43, 419
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 233, 418
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 15, 85, 204
Hpy8I GTNNAC 2 cut(s) 233, 418
Hpy99I CGWCG 2 cut(s) 419, 455
HpyAV CCTTC 4 cut(s) 12, 349, 403, 440
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 441, 447
Hsp92I GRCGYC 2 cut(s) 330, 453
Hsp92II CATG 3 cut(s) 93, 253, 308
HspAI GCGC 2 cut(s) 284, 294
Kzo9I GATC 2 cut(s) 11, 63
LmnI GCTCC 2 cut(s) 87, 256
LpnPI CCDG 8 cut(s) 98, 161, 195, 207, 222, 249, 312, 339
Lsp1109I GCAGC 5 cut(s) 181, 184, 246, 303, 447
MabI ACCWGGT 1 cut(s) 235
MaeI CTAG 4 cut(s) 5, 57, 185, 228
MalI GATC 2 cut(s) 13, 65
MboI GATC 2 cut(s) 11, 63
MboII GAAGA 2 cut(s) 192, 398
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 235
MluI ACGCGT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 4 cut(s) 206, 334, 370, 387
MslI CAYNNNNRTG 1 cut(s) 106
MspR9I CCNGG 2 cut(s) 237, 327
MvaI CCWGG 2 cut(s) 237, 327
MvnI CGCG 4 cut(s) 36, 265, 294, 444
MwoI GCNNNNNNNGC 3 cut(s) 222, 441, 447
NdeII GATC 2 cut(s) 11, 63
NlaIII CATG 3 cut(s) 93, 253, 308
NlaIV GGNNCC 1 cut(s) 65
NspI RCATGY 1 cut(s) 93
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 235, 325
PspGI CCWGG 2 cut(s) 235, 325
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 98, 224
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 416
Sau3AI GATC 2 cut(s) 11, 63
Sau96I GGNCC 2 cut(s) 98, 224
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 237, 327
SduI GDGCHC 1 cut(s) 235
SetI ASST 6 cut(s) 23, 84, 211, 241, 261, 360
SexAI ACCWGGT 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 106
SpeI ACTAGT 1 cut(s) 184
SsiI CCGC 8 cut(s) 96, 254, 263, 292, 297, 397, 439, 442
SspMI CTAG 4 cut(s) 5, 57, 185, 228
StyD4I CCNGG 2 cut(s) 235, 325
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 417
TatI WGTACW 1 cut(s) 349
TauI GCSGC 5 cut(s) 99, 265, 299, 441, 444
TfiI GAWTC 1 cut(s) 43
TseI GCWGC 5 cut(s) 169, 172, 259, 316, 435
TspDTI ATGAA 4 cut(s) 117, 125, 179, 293
VneI GTGCAC 1 cut(s) 231
XceI RCATGY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 4 cut(s) 5, 57, 185, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.