pycom17g16270

2S seed storage protein 5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
14465000 .. 14466742
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGAACTTTAGTAGGATAAATTACATCGAGAGTGGCGGATTTGTCTTTAATTATATTATATTTTTATTAGTTTCAAATTTTCCAAATAATAAAAGTTTTTTATTTGTTTCTTATCAACATTGCTCAAACATGATATCTACATCAACAAAATATAGGTTCTACATTTGCCATGTCATCATTTACGACCAAGCTAACAGCAACTTTAGCAGAGGTCTCACAAACAAATTCGTAATTTTTACTATTAGACTCTTATTCAAAACAGACCTTTTTCTTTTCTGCACAGTAACCATTAAGTCTTTCTTATTTGAATTCACCTTACACTATTATCACCACTACCAATCTCATCTCTTTATTACAGTGGTTTGTTTGGCACATCTACCTAGTGAGATATTTCAATTTTTAACTCTTGGAAGATATTTTTTTAGTGTAGCAGAGATGAGAATGCTTCGTTCGATGTGTGGGCACATAAGAGAGAACGAGATTAGGAATGAGGATATTCGAGGTAAATTAAGAATAGTTGAAAATAAAGATAAGATGAGAGAAAATTGGTTAATATGGTTTGGACATACAGAGGCTCAAGCGAAAGGAGTAGAGGAAGACTTGGAAAAAGACTCTAAGAAAAGACTTAGACAACTTGGATCTAACGGAAGACATGACACAAAACCAAACACAGTGACACTTTATTGTTATTGTTGTTGTTGTTGTTGTACTTGGATGATATTTTTACTTTACCTCTTTGACTTAATTAATATTGACCGTTATATAACTCTCAGACTATTGCTACAACTTGGCGATAAATTTAAACTTACTCATAGTATAAAACATATTTTGGATAGTAATTTACAAACTTTGAGGAGTTACCTCAGGAGCTACCTCAAGGGACATTTTTTACAATGCAGTGCTCAGGAATTAATGGGGCTGAAATCAGCTGCTAGATTTTATAACCAGATCACAGGACGATATGTAATTACAGTTAATACGATGTCGTACCAAAAACATCAACCCACTAGGACTTCCATGTCAAATTTTTTTACTTCTACCATCAAACCTAAGACTAATTTATGTTCCTTAATTATGAACTTGTTGAACCAAACCAAGACTTCCAAGCCTGCTTTGATCACTCCCACCATTATTTACTCCTGGGAAATAAACATGAGAATAGCCACCTCCTCCAAAACCAAAATCATGACTTTTAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

47.17

Weight (kDa)

9.52

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019287)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AasI GACNNNNNNGTC 1 cut(s) 1018
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 5 cut(s) 76, 224, 308, 797, 1024
AfaI GTAC 2 cut(s) 709, 989
AgsI TTSAA 6 cut(s) 75, 256, 308, 395, 521, 1087
AjnI CCWGG 1 cut(s) 1139
AluBI AGCT 3 cut(s) 191, 870, 929
AluI AGCT 3 cut(s) 191, 870, 929
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 646
ApeKI GCWGC 1 cut(s) 929
ApoI RAATTY 5 cut(s) 76, 224, 308, 797, 1024
AseI ATTAAT 2 cut(s) 747, 911
AsuHPI GGTGA 2 cut(s) 304, 320
AxyI CCTNAGG 1 cut(s) 863
BaeGI GKGCMC 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 603, 655
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 1 cut(s) 916
BccI CCATC 1 cut(s) 1049
BciT130I CCWGG 1 cut(s) 1141
BclI TGATCA 1 cut(s) 1116
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 3 cut(s) 381, 933, 1008
BisI GCNGC 1 cut(s) 930
BlsI GCNGC 1 cut(s) 931
Bme1390I CCNGG 1 cut(s) 1141
BmrFI CCNGG 1 cut(s) 1141
BpiI GAAGAC 2 cut(s) 603, 655
Bpu10I CCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 561, 860
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 1140
Bse21I CCTNAGG 1 cut(s) 863
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 1141
BseDI CCNNGG 1 cut(s) 1140
BseGI GGATG 1 cut(s) 720
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 784, 877, 917
BseRI GAGGAG 2 cut(s) 868, 1159
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 1 cut(s) 916
BsgI GTGCAG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 904
BslFI GGGAC 1 cut(s) 894
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 894
BsmI GAATGC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 465, 904
Bsp143I GATC 3 cut(s) 638, 948, 1116
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 3 cut(s) 783, 876, 916
BspHI TCATGA 1 cut(s) 1185
BspPI GGATC 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 1140
BssMI GATC 3 cut(s) 638, 948, 1116
Bst2UI CCWGG 1 cut(s) 1141
Bst4CI ACNGT 5 cut(s) 283, 358, 673, 758, 973
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 6 cut(s) 615, 626, 770, 863, 903, 1050
BstF5I GGATG 1 cut(s) 720
BstKTI GATC 3 cut(s) 641, 951, 1119
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 638, 948, 1116
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 1141
BstSCI CCNGG 1 cut(s) 1139
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 916
BstV2I GAAGAC 2 cut(s) 603, 655
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
Bsu36I CCTNAGG 1 cut(s) 863
BtsCI GGATG 1 cut(s) 720
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 3 cut(s) 363, 678, 904
Cac8I GCNNGC 1 cut(s) 1110
CciI TCATGA 1 cut(s) 1185
Csp6I GTAC 2 cut(s) 708, 988
CviAII CATG 6 cut(s) 130, 170, 653, 1018, 1153, 1186
CviJI RGCY 8 cut(s) 191, 575, 870, 919, 929, 1108, 1163, 1199
CviKI_1 RGCY 8 cut(s) 191, 575, 870, 919, 929, 1108, 1163, 1199
CviQI GTAC 2 cut(s) 708, 988
DdeI CTNAG 6 cut(s) 615, 626, 770, 863, 903, 1050
DpnI GATC 3 cut(s) 640, 950, 1118
DpnII GATC 3 cut(s) 638, 948, 1116
DraI TTTAAA 1 cut(s) 802
DrdI GACNNNNNNGTC 1 cut(s) 1018
DseDI GACNNNNNNGTC 1 cut(s) 1018
EciI GGCGGA 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 218
Eco32I GATATC 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 1139
EcoRV GATATC 1 cut(s) 135
FaeI CATG 6 cut(s) 133, 173, 656, 1021, 1156, 1189
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 894
FatI CATG 6 cut(s) 129, 169, 652, 1017, 1152, 1185
FbaI TGATCA 1 cut(s) 1116
Fnu4HI GCNGC 1 cut(s) 930
FokI GGATG 1 cut(s) 727
Fsp4HI GCNGC 1 cut(s) 930
FspBI CTAG 3 cut(s) 381, 933, 1008
GluI GCNGC 1 cut(s) 930
Hin1II CATG 6 cut(s) 133, 173, 656, 1021, 1156, 1189
HinfI GANTC 2 cut(s) 246, 611
HphI GGTGA 2 cut(s) 304, 320
Hpy188I TCNGA 1 cut(s) 773
Hpy188III TCNNGA 4 cut(s) 28, 865, 905, 1186
HpyCH4III ACNGT 5 cut(s) 283, 358, 673, 758, 973
HpyCH4V TGCA 2 cut(s) 279, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 6 cut(s) 615, 626, 770, 863, 903, 1050
Hsp92II CATG 6 cut(s) 133, 173, 656, 1021, 1156, 1189
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 3 cut(s) 638, 948, 1116
LmnI GCTCC 1 cut(s) 867
LpnPI CCDG 7 cut(s) 850, 890, 939, 959, 1122, 1126, 1153
Lsp1109I GCAGC 1 cut(s) 916
MaeI CTAG 3 cut(s) 381, 933, 1008
MaeIII GTNAC 3 cut(s) 283, 673, 857
MalI GATC 3 cut(s) 640, 950, 1118
MboI GATC 3 cut(s) 638, 948, 1116
MboII GAAGA 3 cut(s) 423, 608, 660
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 465, 904
MlyI GAGTC 2 cut(s) 240, 605
MspA1I CMGCKG 1 cut(s) 929
MspR9I CCNGG 1 cut(s) 1141
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 1141
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 3 cut(s) 638, 948, 1116
NlaIII CATG 6 cut(s) 133, 173, 656, 1021, 1156, 1189
NmuCI GTSAC 1 cut(s) 673
PacI TTAATTAA 1 cut(s) 747
PagI TCATGA 1 cut(s) 1185
PctI GAATGC 1 cut(s) 447
PkrI GCNGC 1 cut(s) 931
PleI GAGTC 2 cut(s) 240, 605
PpsI GAGTC 2 cut(s) 240, 605
PshBI ATTAAT 2 cut(s) 747, 911
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 1 cut(s) 1139
PspGI CCWGG 1 cut(s) 1139
PsuI RGATCY 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 2 cut(s) 709, 989
RsaNI GTAC 2 cut(s) 708, 988
SatI GCNGC 1 cut(s) 930
Sau3AI GATC 3 cut(s) 638, 948, 1116
SchI GAGTC 2 cut(s) 240, 605
ScrFI CCNGG 1 cut(s) 1141
SduI GDGCHC 2 cut(s) 465, 904
SmlI CTYRAG 2 cut(s) 576, 875
SmoI CTYRAG 2 cut(s) 576, 875
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 751
SspMI CTAG 3 cut(s) 381, 933, 1008
StyD4I CCNGG 1 cut(s) 1139
TaaI ACNGT 5 cut(s) 283, 358, 673, 758, 973
TaqI TCGA 3 cut(s) 27, 452, 499
TatI WGTACW 1 cut(s) 707
TscAI CASTG 3 cut(s) 363, 678, 904
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 1 cut(s) 929
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 2 cut(s) 17, 1091
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 3 cut(s) 363, 678, 904
VspI ATTAAT 2 cut(s) 747, 911
XapI RAATTY 5 cut(s) 76, 224, 308, 797, 1024
XspI CTAG 3 cut(s) 381, 933, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.