pycom17g17130

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0019785
Physical Location & Seq
Forward (+)
14989140 .. 14990267
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 858 bp
ATGCTTGGATTTTCGAGTGTAGATATATTATGTGGCAATGTGTGGTATGTGCAAATTTTTTTAAAATATATTTTTTTCTTAACGGGTCATAACGGGTCGGGTCACTTTACCCGTTGGGTGTTACACGAAAACGACACGAACACGATAGACATGACCCGTTTGCCAGGCCTACCTGGGCGTCCGCAGCGTCATGCAATAATATGCATATCTATACTAATGCATATATTAAAATGGAATGCAATTGACATGACATTTAAAAACCAAACCAAAAGGCCACTCACCTGGAGTCCGCGCTACAACTCCTTAGCACAAACATTGAGACGTCACGAACGATCGGCGCCTAGAACAATTATCAAAACATATCTCAGAATCCTTATCAATAGAACACGTAACTTACGTATCCTATTCGGAAAGATCCGTATGTTGGATTCTCGATCCGTAACCAAGGGTCAGATCGTCGATTCATATAATTATCAAGTAATGCACCTTAATCAAATTAGATTTACAATAATCAAATCACATCATATGGATATCAAATCTGAGATCAATATATCAATTTATTTACAGGCAAGTAGATCTCGATGTGGGGATAAATTTTCATACCTGGGCCGAAAGTCCAATTCGGCGGGGAAACCCTTGAAAATAGCCTTGAATCGCCAGAAACCCTCGAATTTGGGTGTTCTTGATTCGACTCCAAAACAACTCCGACGCCCTAGCCAATGGATGGGCTTTGTTACAGACCTCCGGGGGAGTCTAATGGTCGTGGTAATTGGAAGAACACGTTTCAGATTTGGTGGATCGATCGATCACGGATCTCATAACACCCACGGGTTCATTTATTCCAGATTCCGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

286

Amino Acids

33.08

Weight (kDa)

11.15

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019785)

Species Orthologous Gene IDs
malus_domestica MD07G1185500.v1.1
pyrus_communis pycom01g04080 pycom05g08400 pycom07g12130 pycom11g13980 pycom17g16240 pycom17g17130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 1 cut(s) 724
AccII CGCG 1 cut(s) 292
AciI CCGC 3 cut(s) 182, 290, 626
AclWI GGATC 4 cut(s) 409, 429, 805, 820
AcsI RAATTY 3 cut(s) 54, 593, 670
AcyI GRCGYC 4 cut(s) 178, 322, 338, 709
AfiI CCNNNNNNNGG 2 cut(s) 424, 724
AflIII ACRYGT 2 cut(s) 386, 779
AgsI TTSAA 2 cut(s) 640, 652
AjnI CCWGG 4 cut(s) 163, 172, 281, 603
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 4 cut(s) 409, 429, 805, 820
AoxI GGCC 3 cut(s) 166, 272, 607
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 3 cut(s) 54, 593, 670
AspLEI GCGC 2 cut(s) 294, 340
AspS9I GGNCC 1 cut(s) 607
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 271
BaeI ACNNNNGTAYC 2 cut(s) 382, 415
BanI GGYRCC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 718
BciT130I CCWGG 4 cut(s) 165, 174, 283, 605
BciVI GTATCC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 342, 714
BfoI RGCGCY 1 cut(s) 341
BfuI GTATCC 1 cut(s) 410
BglII AGATCT 1 cut(s) 575
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 5 cut(s) 165, 174, 283, 605, 746
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 5 cut(s) 165, 174, 283, 605, 746
BpmI CTGGAG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 746
Bsa29I ATCGAT 2 cut(s) 800, 804
BsaAI YACGTR 2 cut(s) 389, 398
BsaHI GRCGYC 4 cut(s) 178, 322, 338, 709
BsaJI CCNNGG 5 cut(s) 173, 444, 604, 745, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 724
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 4 cut(s) 165, 174, 283, 605
BseCI ATCGAT 2 cut(s) 800, 804
BseDI CCNNGG 5 cut(s) 173, 444, 604, 745, 826
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 424, 724
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 379, 531
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 292
Bsh1285I CGRYCG 2 cut(s) 335, 804
BshFI GGCC 3 cut(s) 168, 274, 609
BshNI GGYRCC 1 cut(s) 337
BshVI ATCGAT 2 cut(s) 800, 804
BsiEI CGRYCG 2 cut(s) 335, 804
BsiSI CCGG 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 424, 724
BsmAI GTCTC 1 cut(s) 313
BsmBI CGTCTC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 3 cut(s) 168, 274, 609
BspACI CCGC 3 cut(s) 182, 290, 626
BspANI GGCC 3 cut(s) 168, 274, 609
BspCNI CTCAG 2 cut(s) 378, 532
BspDI ATCGAT 2 cut(s) 800, 804
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 4 cut(s) 409, 429, 805, 820
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 5 cut(s) 173, 444, 604, 745, 826
BssNI GRCGYC 4 cut(s) 178, 322, 338, 709
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 4 cut(s) 165, 174, 283, 605
BstACI GRCGYC 4 cut(s) 178, 322, 338, 709
BstBAI YACGTR 2 cut(s) 389, 398
BstDEI CTNAG 3 cut(s) 304, 365, 540
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 2 cut(s) 294, 340
BstMAI GTCTC 1 cut(s) 313
BstMCI CGRYCG 2 cut(s) 335, 804
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 4 cut(s) 165, 174, 283, 605
BstSCI CCNGG 5 cut(s) 163, 172, 281, 603, 744
BstSNI TACGTA 1 cut(s) 398
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 3 cut(s) 414, 575, 812
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 3 cut(s) 414, 575, 812
Bsu15I ATCGAT 2 cut(s) 800, 804
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 168, 274, 609
BsuTUI ATCGAT 2 cut(s) 800, 804
BtgI CCRYGG 1 cut(s) 826
BtsCI GGATG 1 cut(s) 729
CfoI GCGC 2 cut(s) 294, 340
Cfr13I GGNCC 1 cut(s) 607
ClaI ATCGAT 2 cut(s) 800, 804
CseI GACGC 3 cut(s) 167, 176, 717
CviAII CATG 3 cut(s) 151, 191, 247
CviJI RGCY 6 cut(s) 168, 274, 609, 647, 717, 729
CviKI_1 RGCY 6 cut(s) 168, 274, 609, 647, 717, 729
DdeI CTNAG 3 cut(s) 304, 365, 540
DinI GGCGCC 1 cut(s) 339
DraI TTTAAA 2 cut(s) 63, 256
Eco105I TACGTA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 168
Eco32I GATATC 1 cut(s) 532
EcoRII CCWGG 4 cut(s) 163, 172, 281, 603
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 2 cut(s) 206, 222
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 3 cut(s) 154, 194, 250
FatI CATG 3 cut(s) 150, 190, 246
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 2 cut(s) 342, 714
GlaI GCGC 2 cut(s) 293, 339
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 3 cut(s) 168, 274, 609
HapII CCGG 1 cut(s) 745
HgaI GACGC 3 cut(s) 167, 176, 717
HhaI GCGC 2 cut(s) 294, 340
Hin1I GRCGYC 4 cut(s) 178, 322, 338, 709
Hin1II CATG 3 cut(s) 154, 194, 250
Hin6I GCGC 2 cut(s) 292, 338
HinP1I GCGC 2 cut(s) 292, 338
HinfI GANTC 9 cut(s) 286, 369, 428, 461, 652, 686, 691, 751, 846
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 7 cut(s) 368, 410, 453, 541, 707, 788, 851
Hpy188III TCNNGA 5 cut(s) 326, 432, 579, 683, 843
Hpy99I CGWCG 2 cut(s) 461, 711
HpyCH4IV ACGT 4 cut(s) 322, 388, 397, 781
HpyCH4V TGCA 6 cut(s) 52, 194, 204, 220, 239, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 304, 365, 540
HpySE526I ACGT 4 cut(s) 322, 388, 397, 781
Hsp92I GRCGYC 4 cut(s) 178, 322, 338, 709
Hsp92II CATG 3 cut(s) 154, 194, 250
HspAI GCGC 2 cut(s) 292, 338
KasI GGCGCC 1 cut(s) 337
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 2 cut(s) 342, 714
MaeII ACGT 4 cut(s) 322, 388, 397, 781
MaeIII GTNAC 6 cut(s) 101, 120, 323, 389, 439, 733
MboII GAAGA 1 cut(s) 786
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 3 cut(s) 414, 575, 812
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 3 cut(s) 295, 685, 760
MmeI TCCRAC 2 cut(s) 405, 730
MnlI CCTC 2 cut(s) 676, 752
Mph1103I ATGCAT 2 cut(s) 206, 222
MseI TTAA 5 cut(s) 62, 80, 227, 255, 489
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 5 cut(s) 165, 174, 283, 605, 746
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 4 cut(s) 165, 174, 283, 605
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 338
NciI CCSGG 1 cut(s) 746
NdeI CATATG 1 cut(s) 525
NlaIII CATG 3 cut(s) 154, 194, 250
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 101, 323
NsiI ATGCAT 2 cut(s) 206, 222
PceI AGGCCT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 2 cut(s) 328, 394
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 6 cut(s) 369, 428, 461, 652, 686, 846
PflMI CCANNNNNTGG 1 cut(s) 724
PkrI GCNGC 1 cut(s) 186
Ple19I CGATCG 2 cut(s) 335, 804
PleI GAGTC 3 cut(s) 294, 685, 759
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 3 cut(s) 294, 685, 759
Ppu21I YACGTR 2 cut(s) 389, 398
Psp6I CCWGG 4 cut(s) 163, 172, 281, 603
PspGI CCWGG 4 cut(s) 163, 172, 281, 603
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 607
PsuI RGATCY 3 cut(s) 414, 575, 812
PvuI CGATCG 2 cut(s) 335, 804
SaqAI TTAA 5 cut(s) 62, 80, 227, 255, 489
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 3 cut(s) 295, 685, 760
ScrFI CCNGG 5 cut(s) 165, 174, 283, 605, 746
SfoI GGCGCC 1 cut(s) 339
SnaBI TACGTA 1 cut(s) 398
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 3 cut(s) 182, 290, 626
SspDI GGCGCC 1 cut(s) 337
SspMI CTAG 2 cut(s) 342, 714
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 5 cut(s) 163, 172, 281, 603, 744
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 4 cut(s) 325, 391, 400, 784
TaqI TCGA 8 cut(s) 14, 433, 459, 580, 668, 689, 800, 804
TfiI GAWTC 6 cut(s) 369, 428, 461, 652, 686, 846
Tru1I TTAA 5 cut(s) 62, 80, 227, 255, 489
Tru9I TTAA 5 cut(s) 62, 80, 227, 255, 489
TseFI GTSAC 2 cut(s) 101, 323
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 101, 323
TspDTI ATGAA 3 cut(s) 453, 588, 823
TspGWI ACGGA 3 cut(s) 407, 427, 825
Van91I CCANNNNNTGG 1 cut(s) 724
XapI RAATTY 3 cut(s) 54, 593, 670
XspI CTAG 2 cut(s) 342, 714
ZraI GACGTC 1 cut(s) 323
Zsp2I ATGCAT 2 cut(s) 206, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.