Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016203

Physical Location & Seq

Genomic Coordinates Forward (+)

20467164 .. 20477068

Gene Structure 9905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCTGGCTCGCCTCGCCTCCAATCGGTTCCAGGAGATCCGTCGGATTTTCACTCAGCCTGTCCGATCCTTCTCCACCGCCCTCAACTACCATCTTGATTCGCCGGAAAACAATCCAGACCTACCGTGGGAATTCTCCGAAGCTAACAAGCAGAAGGCGAAAGAGATACTATCCCATTATCCATCCAACTACAAGCAGTCTGCAGTGATTCCTCTGATCGATCTTGCACAGCAGCAGCATGGAGGGTGGCTCCCTGTTTCAGCAATGAATGCAGTAGCGAAGGTAATAGAAGTTGCACCTATACGTGTATATGAGGTTGCAACATTTTACTCAATGTTCAATCGGACTAAGGTGGGCAAGTACCACCTTTTGGTTTGTGGCACAACACCATGTATGATTCGTGGTTCACGAGACATTGAAGCAGCTTTACTGAAACATTTAGGAGTGAAGCGCAATGAAGTAACCAAGGATGGATTATTTTCTGTTGGAGAAATGGAATGCATGGGAAGCTGTGTGAATGCTCCCATGATTACAGTCGCTGATTACTCCAATGGATCAGAGGGATATACGTACAATTACTACGAAGATGTTACTCCCGAGCGAGTTGTGGAAATAGTTGAGAAGTTAAAAAAGGGCGAGAAGCCACCGCGTGGTACTCAGAATCCTAAGCGCATTATGTGCGGTCCAGAAGGAGGAAATACCACGTTGCTTGGTGAGCCCAAACCTCCTCCGTGCCGGGATCTTGACGCATCTTTGTTTCTTCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008137 GO:0008150 GO:0008152 GO:0008270 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

2Fe-2S_thioredx

Protein Analysis

257

Amino Acids

28.64

Weight (kDa)

8.14

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2Fe-2S_thioredx	PF01257	54 - 210	2.8e-50	Thioredoxin-like [2Fe-2S] ferredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02580
fragaria_vesca	FvH4_6g29310
malus_domestica	MD17G1215900.v1.1 MD17G1216000.v1.1
prunus_persica	Prupe.3G092100_v2.0.a1
pyrus_communis	pycom17g22060
rosa_chinensis	RchiOBHm_Chr2g0134501
rosa_laevigata	RLG00000019397
rosa_multiflora	Rmu_sc0005464.1_g000028
rosa_roxburghii	Rroxscaffold_2G00110160
rosa_rugosa	Rorug02G0317800
rosa_samantha	Rh2AG375500 Rh2CG354200 Rh2DG393300
rosa_wichuraiana	Rw2G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	769
AccB7I	CCANNNNNTGG	2 cut(s)	370, 650
AccII	CGCG	1 cut(s)	649
AciI	CCGC	3 cut(s)	78, 647, 681
AclWI	GGATC	4 cut(s)	31, 60, 562, 747
AcsI	RAATTY	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	3 cut(s)	362, 572, 655
AfiI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	340, 419
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	143, 425, 510
AluI	AGCT	3 cut(s)	143, 425, 510
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	4 cut(s)	31, 60, 562, 747
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	232, 235, 422
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	453, 672
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	720
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BauI	CACGAG	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	244, 247, 434
BccI	CCATC	3 cut(s)	99, 190, 464
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	233, 236, 423
BlsI	GCNGC	3 cut(s)	234, 237, 424
Bme1390I	CCNGG	2 cut(s)	32, 737
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	2 cut(s)	29, 251
BmrFI	CCNGG	2 cut(s)	32, 737
BmsI	GCATC	1 cut(s)	758
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu10I	CCTNAGC	1 cut(s)	666
BpuMI	CCSGG	1 cut(s)	737
Bsa29I	ATCGAT	1 cut(s)	219
BsaAI	YACGTR	2 cut(s)	305, 570
BsaJI	CCNNGG	2 cut(s)	125, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
Bse3DI	GCAATG	2 cut(s)	270, 460
BseBI	CCWGG	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	125, 465
BseGI	GGATG	2 cut(s)	182, 475
BseLI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
BseMI	GCAATG	2 cut(s)	270, 460
BseMII	CTCAG	2 cut(s)	68, 671
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	3 cut(s)	244, 247, 434
Bsh1236I	CGCG	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	104, 736
BslI	CCNNNNNNNGG	5 cut(s)	24, 127, 370, 650, 692
BsmAI	GTCTC	1 cut(s)	405
BsmI	GAATGC	3 cut(s)	274, 503, 523
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
BspACI	CCGC	3 cut(s)	78, 647, 681
BspCNI	CTCAG	2 cut(s)	67, 670
BspDI	ATCGAT	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	29, 251
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	4 cut(s)	31, 60, 562, 747
BsrDI	GCAATG	2 cut(s)	270, 460
BssECI	CCNNGG	2 cut(s)	125, 465
BssMI	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	126, 535
BstAPI	GCANNNNNTGC	2 cut(s)	269, 678
BstBAI	YACGTR	2 cut(s)	305, 570
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	4 cut(s)	54, 348, 657, 666
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	182, 475
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	2 cut(s)	453, 672
BstKTI	GATC	6 cut(s)	39, 68, 219, 223, 557, 742
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 735
BstSFI	CTRYAG	1 cut(s)	201
BstSNI	TACGTA	1 cut(s)	570
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	244, 247, 434
BstX2I	RGATCY	2 cut(s)	36, 739
BstYI	RGATCY	2 cut(s)	36, 739
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	182, 475
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	6, 10
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	453, 672
Cfr13I	GGNCC	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	361, 571, 654
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	4 cut(s)	239, 390, 502, 526
CviJI	RGCY	8 cut(s)	8, 58, 143, 250, 425, 510, 643, 718
CviKI_1	RGCY	8 cut(s)	8, 58, 143, 250, 425, 510, 643, 718
CviQI	GTAC	3 cut(s)	361, 571, 654
DdeI	CTNAG	4 cut(s)	54, 348, 657, 666
DpnI	GATC	6 cut(s)	38, 67, 218, 222, 556, 741
DpnII	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
DraIII	CACNNNGTG	1 cut(s)	650
Eco105I	TACGTA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	242, 393, 505, 529
FatI	CATG	4 cut(s)	238, 389, 501, 525
Fnu4HI	GCNGC	3 cut(s)	233, 236, 423
FokI	GGATG	2 cut(s)	169, 482
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	3 cut(s)	233, 236, 423
GlaI	GCGC	2 cut(s)	452, 671
GluI	GCNGC	3 cut(s)	233, 236, 423
HapII	CCGG	2 cut(s)	104, 736
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	2 cut(s)	453, 672
Hin1II	CATG	4 cut(s)	242, 393, 505, 529
Hin6I	GCGC	2 cut(s)	451, 670
HinP1I	GCGC	2 cut(s)	451, 670
HinfI	GANTC	4 cut(s)	98, 208, 397, 661
HpaII	CCGG	2 cut(s)	104, 736
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	7 cut(s)	45, 65, 139, 216, 345, 559, 660
Hpy188III	TCNNGA	6 cut(s)	95, 116, 408, 596, 686, 743
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	4 cut(s)	79, 148, 274, 683
HpyCH4III	ACNGT	2 cut(s)	126, 535
HpyCH4IV	ACGT	3 cut(s)	304, 569, 704
HpyCH4V	TGCA	6 cut(s)	203, 227, 272, 296, 320, 501
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
HpyF3I	CTNAG	4 cut(s)	54, 348, 657, 666
HpySE526I	ACGT	3 cut(s)	304, 569, 704
Hsp92II	CATG	4 cut(s)	242, 393, 505, 529
HspAI	GCGC	2 cut(s)	451, 670
Kzo9I	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
LmnI	GCTCC	2 cut(s)	255, 526
LpnPI	CCDG	8 cut(s)	17, 44, 72, 117, 129, 267, 699, 749
Lsp1109I	GCAGC	3 cut(s)	244, 247, 434
LweI	GCATC	1 cut(s)	758
MaeII	ACGT	3 cut(s)	304, 569, 704
MaeIII	GTNAC	2 cut(s)	460, 589
MalI	GATC	6 cut(s)	38, 67, 218, 222, 556, 741
MboI	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
MboII	GAAGA	2 cut(s)	596, 752
MflI	RGATCY	2 cut(s)	36, 739
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	2 cut(s)	131, 574
MmeI	TCCRAC	3 cut(s)	23, 210, 466
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	1 cut(s)	626
MspI	CCGG	2 cut(s)	104, 736
MspR9I	CCNGG	2 cut(s)	32, 737
Mva1269I	GAATGC	3 cut(s)	274, 503, 523
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	5 cut(s)	14, 269, 507, 678, 715
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
NlaIII	CATG	4 cut(s)	242, 393, 505, 529
NlaIV	GGNNCC	2 cut(s)	29, 251
NsiI	ATGCAT	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	3 cut(s)	274, 503, 523
PfeI	GAWTC	4 cut(s)	98, 208, 397, 661
PflMI	CCANNNNNTGG	2 cut(s)	370, 650
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	234, 237, 424
Ppu21I	YACGTR	2 cut(s)	305, 570
PsiI	TTATAA	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	29, 251
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	36, 739
RsaI	GTAC	3 cut(s)	362, 572, 655
RsaNI	GTAC	3 cut(s)	361, 571, 654
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	3 cut(s)	233, 236, 423
Sau3AI	GATC	6 cut(s)	36, 65, 216, 220, 554, 739
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	2 cut(s)	32, 737
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	1 cut(s)	758
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	683
SnaBI	TACGTA	1 cut(s)	570
Sse9I	AATT	2 cut(s)	131, 574
SsiI	CCGC	3 cut(s)	78, 647, 681
StyD4I	CCNGG	2 cut(s)	30, 735
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	126, 535
TaiI	ACGT	3 cut(s)	307, 572, 707
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	131, 574
TfiI	GAWTC	4 cut(s)	98, 208, 397, 661
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	210
TseI	GCWGC	3 cut(s)	232, 235, 422
TspDTI	ATGAA	2 cut(s)	281, 471
TspGWI	ACGGA	2 cut(s)	29, 720
TspRI	CASTG	1 cut(s)	210
Van91I	CCANNNNNTGG	2 cut(s)	370, 650
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.