Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012428

Physical Location & Seq

Genomic Coordinates Forward (+)

22092263 .. 22093378

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGACCAAATATGAACGTGCTAGAATATTGGGTACTCGTGCTGTGCAGATCAGCATGAATGCCCCTGTGATGGTTGAGTTGCAGGGCGAGACTGACCCACTTGAGATTGCTATGAAGGAGCTTCGTGAGCGGAAGGTGCCCTTCACCATTCGCCGCTACCTGCCTGATGGAAGTTACGAAGATTGGGGAGTAGATGAGTTGATTGTGGAAGACTCGTGGAAGAGGCAGGTGGGAGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb6

Protein Analysis

81

Amino Acids

9.3

Weight (kDa)

5.01

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb6	PF01192	1 - 48	1e-10	RNA polymerase Rpb6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04630 AT5G51940
fragaria_vesca	FvH4_2g14180
malus_domestica	MD09G1242800.v1.1 MD12G1011200.v1.1 MD17G1234800.v1.1
prunus_persica	Prupe.3G134400_v2.0.a1 Prupe.7G013200_v2.0.a1
pyrus_communis	pycom09g16110 pycom12g00870 pycom17g23820
rosa_chinensis	RchiOBHm_Chr6g0276321
rosa_laevigata	RLG00000013404
rosa_multiflora	Rmu_sc0003665.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192390
rosa_rugosa	Rorug06G0099900 Rorug06G0100000
rosa_samantha	Rh6DG207900
rosa_wichuraiana	Rw6G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	2 cut(s)	168, 217
AccB1I	GGYRCC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	2 cut(s)	130, 154
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	136
BauI	CACGAG	2 cut(s)	36, 214
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	2 cut(s)	64, 161
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	21
BfuAI	ACCTGC	2 cut(s)	168, 217
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	130, 154
BspLI	GGNNCC	1 cut(s)	138
BspMI	ACCTGC	2 cut(s)	168, 217
BspT107I	GGYRCC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	130
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	2 cut(s)	36, 214
Bst2BI	CACGAG	2 cut(s)	36, 214
Bst6I	CTCTTC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 136
BstSLI	GKGCMC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	216
BveI	ACCTGC	2 cut(s)	168, 217
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	12, 56, 113
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	109, 127, 151
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	46, 82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 136
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	68, 78, 173, 177, 212
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	50
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	191, 221, 232
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	216, 227
Mva1269I	GAATGC	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	127, 136
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	6 cut(s)	19, 123, 138, 162, 231, 238
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	2 cut(s)	130, 154
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	156
TspDTI	ATGAA	3 cut(s)	27, 71, 128
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.