Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Forward (+)

26278845 .. 26279655

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTATAAACACACAAAGTTGGTGGGCAATGGCAATGGCGATGGCGCGGCTTCATCAATAAATTTGCTAAAAAGTGATGGGCAGAGGCAGCAGCACACCTACAACTACAAGTACTACTTCTTGTTCACCGTCGTCATCCTTGTCGTCGTCCTTGTCACTCTACTACTCACAGTCGTTAAACAGTTGAAGAGAGATCTCACCACAGATCTTCAGCTTGGGCTTAGCTTATCACCCTCTGCAGCGTCCCAACGAGTACAACGCAACCCCTCTCAGTATCCGTCTGCCGAAAGGGGGAGAGCATCGGAGAAGAATTTAATTGGGTCAGTTATTCAGAAGATGAATGCAGCGACAGCAGATGATGAACACAATGATGTTGAGAGCAGCAGCAGCAGCAGGAACACAAGAAGAAGACTGTATGTCAAGGTTTACATGGAGGGGCATGCCATTGGAAGAAAGCTGGATCTATTAGCCCATCATGGTTTTCACGACATGATACGGACACTCGAACACATGTTCAACACCAACATTCTCTGGGGAGATGATGTGGACAGAGTGCACTCTGGTCATTACGAACTTCATGTTTTGACATATGAGGACGAGGAAGGGGATTGGCTCATAGTCGGTGACGTTCCTTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

214

Amino Acids

24.17

Weight (kDa)

6.41

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	113 - 213	3.6e-18	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	61, 310
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	113, 255
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	187, 517
AhdI	GACNNNNNGTC	1 cut(s)	416
AluBI	AGCT	3 cut(s)	214, 225, 457
AluI	AGCT	3 cut(s)	214, 225, 457
Alw21I	GWGCWC	1 cut(s)	558
Alw44I	GTGCAC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	468
ApaLI	GTGCAC	1 cut(s)	554
ApeKI	GCWGC	8 cut(s)	88, 91, 239, 344, 381, 384, 387, 390
ApoI	RAATTY	2 cut(s)	61, 310
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	4 cut(s)	118, 190, 222, 635
BaeGI	GKGCMC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	8 cut(s)	100, 103, 251, 356, 393, 396, 399, 402
BccI	CCATC	3 cut(s)	35, 71, 480
BciVI	GTATCC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	2 cut(s)	193, 205
BisI	GCNGC	9 cut(s)	48, 89, 92, 240, 345, 382, 385, 388, 391
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	9 cut(s)	49, 90, 93, 241, 346, 383, 386, 389, 392
BmcAI	AGTACT	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	415
Bpu1102I	GCTNAGC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	34, 40
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	2 cut(s)	34, 40
BseMII	CTCAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	8 cut(s)	100, 103, 251, 356, 393, 396, 399, 402
Bsh1236I	CGCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	193, 205, 460
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	468
BsrDI	GCAATG	2 cut(s)	34, 40
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	3 cut(s)	193, 205, 460
BssT1I	CCWWGG	1 cut(s)	632
Bst4CI	ACNGT	4 cut(s)	130, 172, 183, 414
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	221, 270
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	196, 208, 463
BstMBI	GATC	3 cut(s)	193, 205, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 350, 387, 390
BstNSI	RCATGY	2 cut(s)	443, 514
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	8 cut(s)	100, 103, 251, 356, 393, 396, 399, 402
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	193, 205, 460
BstYI	RGATCY	3 cut(s)	193, 205, 460
BsuI	GTATCC	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	47
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	112, 254
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	6 cut(s)	430, 440, 476, 490, 511, 578
CviJI	RGCY	7 cut(s)	50, 214, 220, 225, 457, 470, 613
CviKI_1	RGCY	7 cut(s)	50, 214, 220, 225, 457, 470, 613
CviQI	GTAC	2 cut(s)	112, 254
DdeI	CTNAG	2 cut(s)	221, 270
DpnI	GATC	3 cut(s)	195, 207, 462
DpnII	GATC	3 cut(s)	193, 205, 460
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	6 cut(s)	433, 443, 479, 493, 514, 581
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	6 cut(s)	429, 439, 475, 489, 510, 577
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	9 cut(s)	48, 89, 92, 240, 345, 382, 385, 388, 391
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	9 cut(s)	48, 89, 92, 240, 345, 382, 385, 388, 391
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	9 cut(s)	48, 89, 92, 240, 345, 382, 385, 388, 391
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	6 cut(s)	433, 443, 479, 493, 514, 581
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HphI	GGTGA	4 cut(s)	118, 190, 222, 635
Hpy166II	GTNNAC	4 cut(s)	126, 427, 547, 556
Hpy188I	TCNGA	2 cut(s)	304, 333
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	4 cut(s)	126, 427, 547, 556
Hpy99I	CGWCG	2 cut(s)	134, 149
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	4 cut(s)	130, 172, 183, 414
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	3 cut(s)	239, 344, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 350, 387, 390
HpyF3I	CTNAG	2 cut(s)	221, 270
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	6 cut(s)	433, 443, 479, 493, 514, 581
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	193, 205, 460
LpnPI	CCDG	4 cut(s)	379, 443, 517, 546
Lsp1109I	GCAGC	8 cut(s)	100, 103, 251, 356, 393, 396, 399, 402
LweI	GCATC	1 cut(s)	308
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	154, 623
MalI	GATC	3 cut(s)	195, 207, 462
MboI	GATC	3 cut(s)	193, 205, 460
MboII	GAAGA	7 cut(s)	199, 200, 319, 346, 417, 420, 462
MflI	RGATCY	3 cut(s)	193, 205, 460
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	3 cut(s)	61, 310, 315
MnlI	CCTC	6 cut(s)	78, 244, 277, 427, 586, 592
MseI	TTAA	2 cut(s)	177, 314
MslI	CAYNNNNRTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	346
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	88, 350, 387, 390
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	193, 205, 460
NlaIII	CATG	6 cut(s)	433, 443, 479, 493, 514, 581
NmuCI	GTSAC	2 cut(s)	154, 623
NspI	RCATGY	2 cut(s)	443, 514
PaeI	GCATGC	1 cut(s)	443
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	346
PkrI	GCNGC	9 cut(s)	49, 90, 93, 241, 346, 383, 386, 389, 392
PscI	ACATGT	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	3 cut(s)	193, 205, 460
RsaI	GTAC	2 cut(s)	113, 255
RsaNI	GTAC	2 cut(s)	112, 254
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	177, 314
SatI	GCNGC	9 cut(s)	48, 89, 92, 240, 345, 382, 385, 388, 391
Sau3AI	GATC	3 cut(s)	193, 205, 460
ScaI	AGTACT	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	6 cut(s)	101, 216, 227, 426, 459, 630
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	61, 310, 315
SsiI	CCGC	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	4 cut(s)	130, 172, 183, 414
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	61, 310, 315
TatI	WGTACW	2 cut(s)	111, 253
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	177, 314
Tru9I	TTAA	2 cut(s)	177, 314
TseFI	GTSAC	2 cut(s)	154, 623
TseI	GCWGC	8 cut(s)	88, 91, 239, 344, 381, 384, 387, 390
Tsp45I	GTSAC	2 cut(s)	154, 623
TspDTI	ATGAA	4 cut(s)	42, 353, 375, 566
TspGWI	ACGGA	2 cut(s)	267, 511
VneI	GTGCAC	1 cut(s)	554
XapI	RAATTY	2 cut(s)	61, 310
XceI	RCATGY	2 cut(s)	443, 514
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.