RCHIOBHM_MTG0498701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0019698
Physical Location & Seq
Forward (+)
141809 .. 142789
981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGCCTTTCAAACCCCGTCTTCAAAATCAAAAGATAAATGGGCTCGTTGGAAAGAAAGATGGAGTGCGGCCTCCGTTACCCGAATTCGCGCAAGTGTGTCCACACCCCCCAAACAGACTTGACGAGGAATCCATTCTCGCGAACAAACACAACCCCTACACACACCTAGGAGCACCCCTTCCTGCATATCCATACAAGACCCGAGTAGGCGGGTCGAGGTCCTACGAGGTACCCACTGCTCGGAGTACCCTCCCAAAAGGAAAAAGATGTGTCTGTCAGGTTCGGTTCTTCTTAGTTGGGTTGGGCGGGTTCGACCAGAAATGCTATGCTTACACACAAGACTACCCCTCTTCCCGAAAGCTTCGCGGGGACTACTTTACGACGACGGACGACCGCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.03

Weight (kDa)

9.66

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g15891 FvH4_4g15932 FvH4_5g30901 FvH4_6g37553
rosa_chinensis RchiOBHm_MTg0498701
rosa_samantha Rh1CG096700 Rh6AG380000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 229
AccII CGCG 3 cut(s) 89, 140, 366
AciI CCGC 5 cut(s) 67, 210, 306, 366, 394
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 2 cut(s) 231, 247
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 10, 23
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Alw21I GWGCWC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 229
AspA2I CCTAGG 1 cut(s) 166
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 219
AvrII CCTAGG 1 cut(s) 166
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 175
BccI CCATC 1 cut(s) 53
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 240
Bsh1236I CGCG 3 cut(s) 89, 140, 366
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 45, 175
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 5 cut(s) 67, 210, 306, 366, 394
BspANI GGCC 1 cut(s) 70
BspFNI CGCG 3 cut(s) 89, 140, 366
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 292
BstFNI CGCG 3 cut(s) 89, 140, 366
BstHHI GCGC 1 cut(s) 91
BstMCI CGRYCG 1 cut(s) 394
BstUI CGCG 3 cut(s) 89, 140, 366
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BtuMI TCGCGA 1 cut(s) 140
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 230, 246
CviJI RGCY 3 cut(s) 43, 70, 361
CviKI_1 RGCY 3 cut(s) 43, 70, 361
CviQI GTAC 2 cut(s) 230, 246
DdeI CTNAG 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 166
FaiI YATR 3 cut(s) 187, 193, 327
FaqI GGGAC 1 cut(s) 383
FauI CCCGC 3 cut(s) 203, 299, 359
Fnu4HI GCNGC 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 70
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 139, 354
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 2 cut(s) 385, 388
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 292
HspAI GCGC 1 cut(s) 89
KpnI GGTACC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 195, 263, 329
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 75
MboII GAAGA 3 cut(s) 11, 280, 342
MhlI GDGCHC 2 cut(s) 45, 175
MluCI AATT 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 6 cut(s) 81, 118, 210, 220, 260, 358
MroXI GAANNNNTTC 1 cut(s) 132
MvnI CGCG 3 cut(s) 89, 140, 366
NlaIV GGNNCC 1 cut(s) 231
NruI TCGCGA 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 219
PspPPI RGGWCCY 1 cut(s) 219
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 2 cut(s) 231, 247
RsaNI GTAC 2 cut(s) 230, 246
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 219
SduI GDGCHC 2 cut(s) 45, 175
SetI ASST 5 cut(s) 168, 221, 231, 282, 363
SinI GGWCC 1 cut(s) 219
Sse9I AATT 1 cut(s) 83
SsiI CCGC 5 cut(s) 67, 210, 306, 366, 394
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 166
TaqI TCGA 2 cut(s) 215, 312
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 241
TspGWI ACGGA 2 cut(s) 63, 401
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 83
XmaJI CCTAGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.