RchiOBHm_Chr7g0189951

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
9236066 .. 9237280
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1215 bp
ATGAATTCTTTGTGTGATTACTGTGGCAACTTTGTTATGAGTATTGGTTTCATACCCAAGGGGGTCTCCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTAGTACTTGATCTAAATCACACCCTGCTGGCTCTCACAAAACTATGTGATCTGACTCCCGAAGAAGAAGAATATTTAAACAATACCCAAACACTGCAAGATGTTTTCAAAGTGCAAGCTCCTGATGACAGTATGAGCCCTATGATTATCAAGTTGAGACCCTTTGTTAGAACCTTTCTCAGCAAAGCAAGTGACATGTTCGAAATGTATGTTTACGAAGATGCTTCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGACTACTTTGGTCAAAGAGTGATTTCGCGCGAGGATTATTTTTGGAGCAACCACATGGGAAAGAAGCATCTTGATCTTGTGCTTGGCCAGGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGGCATGGACGGAGCAAAATCAAAAGAACATAGCAGTACCAGTGCAAAAGTATCCTTTCTTTAAACAAAGTTGTGGCCAGAAGAGCAGGCGCAAGTCTCTTTGTGAGTTGAAAAATGATGAAGGGGGGATTTATCTTGCAAATGTTCTTCGACGTCTTAGGCGAATACACAGTATGTTCTTTAATGATCAAGTGATGTGTGATGAGGTTTTCAACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGATCGATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAGAGTGATCACCGGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCAGTCACCGGAAGCTTCTTATGTTGAAAAACTAGAGGATCCAGAATCATCGGTGGTGGCTGCAGCAGCTGATGATGTTGGAACGTCACCGGCTCCTTGGGTACACCCTAGCTGGATTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCACTGTTATCACCGAGGAGGGCGAATTTAGTTGCAGCTCATATTGGAACTCTGGAATAGATAATCAGCGGGGAAATGAGGGAGTTGCCCTTGGAAGGCCAGAGAAATAG

Protein Analysis

404

Amino Acids

46.71

Weight (kDa)

8.79

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 49 - 199 1.7e-20 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019039)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189951
rosa_laevigata RLG00000004574
rosa_multiflora Rmu_co8509437.1_g000001
rosa_roxburghii Rroxscaffold_3G00265020
rosa_rugosa Rorug06G0501400
rosa_samantha Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 700
AbsI CCTCGAGG 1 cut(s) 542
AccII CGCG 2 cut(s) 448, 450
AciI CCGC 1 cut(s) 1174
AclWI GGATC 5 cut(s) 404, 417, 520, 977, 990
AcoI YGGCCR 2 cut(s) 505, 619
AcsI RAATTY 3 cut(s) 4, 86, 1130
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 3 cut(s) 153, 582, 1047
AfiI CCNNNNNNNGG 1 cut(s) 1200
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 5 cut(s) 256, 655, 757, 971, 1064
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 7 cut(s) 266, 403, 859, 959, 1013, 1056, 1143
AluI AGCT 7 cut(s) 266, 403, 859, 959, 1013, 1056, 1143
Alw26I GTCTC 3 cut(s) 70, 298, 645
AlwI GGATC 5 cut(s) 404, 417, 520, 977, 990
AlwNI CAGNNNCTG 1 cut(s) 1013
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 3 cut(s) 505, 619, 1202
ApeKI GCWGC 4 cut(s) 1004, 1007, 1010, 1140
ApoI RAATTY 3 cut(s) 4, 86, 1130
AspLEI GCGC 2 cut(s) 450, 636
AsuHPI GGTGA 4 cut(s) 902, 942, 1023, 1108
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 1109
BalI TGGCCA 2 cut(s) 507, 621
BamHI GGATCC 2 cut(s) 409, 982
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 932
BbvI GCAGC 4 cut(s) 991, 1019, 1022, 1152
BccI CCATC 3 cut(s) 388, 766, 931
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 606
BclI TGATCA 2 cut(s) 730, 907
BcoDI GTCTC 3 cut(s) 70, 298, 645
BfaI CTAG 3 cut(s) 149, 977, 1053
BfmI CTRYAG 1 cut(s) 1005
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 4 cut(s) 1005, 1008, 1011, 1141
BlsI GCNGC 4 cut(s) 1006, 1009, 1012, 1142
BmcAI AGTACT 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 542
BmiI GGNNCC 3 cut(s) 411, 984, 1038
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 358, 496
BpiI GAAGAC 1 cut(s) 932
Bpu14I TTCGAA 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 697
BsaI GGTCTC 2 cut(s) 70, 298
BsaJI CCNNGG 5 cut(s) 57, 529, 1040, 1119, 1195
BsaWI WCCGGW 2 cut(s) 912, 952
Bsc4I CCNNNNNNNGG 1 cut(s) 1200
Bse118I RCCGGY 1 cut(s) 1033
Bse1I ACTGG 2 cut(s) 411, 584
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 5 cut(s) 57, 529, 1040, 1119, 1195
BseGI GGATG 1 cut(s) 777
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 1200
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 2 cut(s) 411, 584
BseRI GAGGAG 1 cut(s) 1136
BseSI GKGCMC 1 cut(s) 1109
BseXI GCAGC 4 cut(s) 991, 1019, 1022, 1152
Bsh1236I CGCG 2 cut(s) 448, 450
BshFI GGCC 3 cut(s) 507, 621, 1204
BshVI ATCGAT 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 3 cut(s) 913, 953, 1034
BslI CCNNNNNNNGG 1 cut(s) 1200
BsmAI GTCTC 3 cut(s) 70, 298, 645
BsnI GGCC 3 cut(s) 507, 621, 1204
Bso31I GGTCTC 2 cut(s) 70, 298
BsoBI CYCGRG 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 287, 1109
Bsp143I GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
BspACI CCGC 1 cut(s) 1174
BspANI GGCC 3 cut(s) 507, 621, 1204
BspCNI CTCAG 1 cut(s) 339
BspDI ATCGAT 1 cut(s) 807
BspFNI CGCG 2 cut(s) 448, 450
BspLI GGNNCC 3 cut(s) 411, 984, 1038
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 5 cut(s) 404, 417, 520, 977, 990
BspQI GCTCTTC 2 cut(s) 620, 936
BspT104I TTCGAA 1 cut(s) 348
BspTNI GGTCTC 2 cut(s) 70, 298
BsrFI RCCGGY 1 cut(s) 1033
BsrI ACTGG 2 cut(s) 411, 584
BssAI RCCGGY 1 cut(s) 1033
BssECI CCNNGG 5 cut(s) 57, 529, 1040, 1119, 1195
BssMI GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 4 cut(s) 57, 529, 1040, 1195
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 6 cut(s) 23, 98, 278, 716, 890, 1111
Bst6I CTCTTC 2 cut(s) 620, 936
BstACI GRCGYC 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 177, 264, 632
BstDEI CTNAG 6 cut(s) 77, 134, 326, 414, 701, 846
BstF5I GGATG 1 cut(s) 777
BstFNI CGCG 2 cut(s) 448, 450
BstHHI GCGC 2 cut(s) 450, 636
BstKTI GATC 9 cut(s) 160, 199, 412, 496, 528, 733, 807, 910, 985
BstMAI GTCTC 3 cut(s) 70, 298, 645
BstMBI GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
BstMWI GCNNNNNNNGC 2 cut(s) 627, 1010
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 1109
BstSNI TACGTA 1 cut(s) 104
BstUI CGCG 2 cut(s) 448, 450
BstV1I GCAGC 4 cut(s) 991, 1019, 1022, 1152
BstV2I GAAGAC 1 cut(s) 932
BstX2I RGATCY 2 cut(s) 409, 982
BstYI RGATCY 2 cut(s) 409, 982
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 3 cut(s) 507, 621, 1204
BsuTUI ATCGAT 1 cut(s) 807
BtsCI GGATG 1 cut(s) 777
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 239, 591, 1107
Cac8I GCNNGC 3 cut(s) 177, 264, 632
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 2 cut(s) 450, 636
Cfr10I RCCGGY 1 cut(s) 1033
ClaI ATCGAT 1 cut(s) 807
Csp6I GTAC 3 cut(s) 152, 581, 1046
CviAII CATG 4 cut(s) 343, 475, 549, 1094
CviQI GTAC 3 cut(s) 152, 581, 1046
DdeI CTNAG 6 cut(s) 77, 134, 326, 414, 701, 846
DpnI GATC 9 cut(s) 159, 198, 411, 495, 527, 732, 806, 909, 984
DpnII GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
DraI TTTAAA 2 cut(s) 225, 607
EaeI YGGCCR 2 cut(s) 505, 619
Eam1104I CTCTTC 2 cut(s) 620, 936
EarI CTCTTC 2 cut(s) 620, 936
Eco105I TACGTA 1 cut(s) 104
Eco130I CCWWGG 4 cut(s) 57, 529, 1040, 1195
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 2 cut(s) 70, 298
Eco88I CYCGRG 1 cut(s) 542
EcoRI GAATTC 2 cut(s) 4, 86
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 4 cut(s) 57, 529, 1040, 1195
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 4 cut(s) 57, 529, 1040, 1195
FaeI CATG 4 cut(s) 346, 478, 552, 1097
FatI CATG 4 cut(s) 342, 474, 548, 1093
FauI CCCGC 1 cut(s) 1167
FbaI TGATCA 2 cut(s) 730, 907
Fnu4HI GCNGC 4 cut(s) 1005, 1008, 1011, 1141
FokI GGATG 1 cut(s) 784
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 4 cut(s) 1005, 1008, 1011, 1141
FspBI CTAG 3 cut(s) 149, 977, 1053
GlaI GCGC 2 cut(s) 449, 635
GluI GCNGC 4 cut(s) 1005, 1008, 1011, 1141
HaeIII GGCC 3 cut(s) 507, 621, 1204
HapII CCGG 3 cut(s) 913, 953, 1034
HhaI GCGC 2 cut(s) 450, 636
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 4 cut(s) 346, 478, 552, 1097
Hin6I GCGC 2 cut(s) 448, 634
HinP1I GCGC 2 cut(s) 448, 634
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 857, 957
HinfI GANTC 4 cut(s) 202, 512, 989, 1090
HpaII CCGG 3 cut(s) 913, 953, 1034
HphI GGTGA 4 cut(s) 902, 942, 1023, 1108
Hpy166II GTNNAC 4 cut(s) 101, 112, 361, 1048
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 5 cut(s) 206, 269, 491, 986, 1158
Hpy8I GTNNAC 4 cut(s) 101, 112, 361, 1048
Hpy99I CGWCG 1 cut(s) 699
HpyAV CCTTC 3 cut(s) 659, 868, 1194
HpyCH4III ACNGT 6 cut(s) 23, 98, 278, 716, 890, 1111
HpyCH4IV ACGT 3 cut(s) 103, 697, 1028
HpyCH4V TGCA 7 cut(s) 244, 262, 589, 683, 1007, 1097, 1140
HpyF10VI GCNNNNNNNGC 2 cut(s) 627, 1010
HpyF3I CTNAG 6 cut(s) 77, 134, 326, 414, 701, 846
HpySE526I ACGT 3 cut(s) 103, 697, 1028
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 4 cut(s) 346, 478, 552, 1097
HspAI GCGC 2 cut(s) 448, 634
Ksp22I TGATCA 2 cut(s) 730, 907
Kzo9I GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
LguI GCTCTTC 2 cut(s) 620, 936
LmnI GCTCC 4 cut(s) 271, 465, 556, 1042
Lsp1109I GCAGC 4 cut(s) 991, 1019, 1022, 1152
LweI GCATC 2 cut(s) 358, 496
MaeI CTAG 3 cut(s) 149, 977, 1053
MaeII ACGT 3 cut(s) 103, 697, 1028
MaeIII GTNAC 3 cut(s) 338, 948, 1029
MalI GATC 9 cut(s) 159, 198, 411, 495, 527, 732, 806, 909, 984
MboI GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
MflI RGATCY 2 cut(s) 409, 982
MhlI GDGCHC 2 cut(s) 287, 1109
MlsI TGGCCA 2 cut(s) 507, 621
MluCI AATT 3 cut(s) 4, 86, 1130
MluNI TGGCCA 2 cut(s) 507, 621
MlyI GAGTC 3 cut(s) 196, 521, 1099
MmeI TCCRAC 1 cut(s) 1003
Mox20I TGGCCA 2 cut(s) 507, 621
MscI TGGCCA 2 cut(s) 507, 621
MseI TTAA 5 cut(s) 224, 606, 726, 779, 824
Msp20I TGGCCA 2 cut(s) 507, 621
MspA1I CMGCKG 2 cut(s) 1013, 1174
MspI CCGG 3 cut(s) 913, 953, 1034
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 2 cut(s) 448, 450
MwoI GCNNNNNNNGC 2 cut(s) 627, 1010
NdeII GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
NlaIII CATG 4 cut(s) 346, 478, 552, 1097
NlaIV GGNNCC 3 cut(s) 411, 984, 1038
NmuCI GTSAC 3 cut(s) 338, 948, 1029
NspI RCATGY 1 cut(s) 346
NspV TTCGAA 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 542
PciI ACATGT 1 cut(s) 342
PciSI GCTCTTC 2 cut(s) 620, 936
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PfeI GAWTC 1 cut(s) 989
PkrI GCNGC 4 cut(s) 1006, 1009, 1012, 1142
PleI GAGTC 3 cut(s) 196, 520, 1098
PpsI GAGTC 3 cut(s) 196, 520, 1098
Ppu21I YACGTR 1 cut(s) 104
PscI ACATGT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 411, 984, 1038
PspXI VCTCGAGB 1 cut(s) 542
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 2 cut(s) 409, 982
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 3 cut(s) 153, 582, 1047
RsaNI GTAC 3 cut(s) 152, 581, 1046
SapI GCTCTTC 2 cut(s) 620, 936
SaqAI TTAA 5 cut(s) 224, 606, 726, 779, 824
SatI GCNGC 4 cut(s) 1005, 1008, 1011, 1141
Sau3AI GATC 9 cut(s) 157, 196, 409, 493, 525, 730, 804, 907, 982
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 3 cut(s) 196, 521, 1099
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 287, 1109
SfaNI GCATC 2 cut(s) 358, 496
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SnaBI TACGTA 1 cut(s) 104
Sse9I AATT 3 cut(s) 4, 86, 1130
SsiI CCGC 1 cut(s) 1174
SspI AATATT 1 cut(s) 221
SspMI CTAG 3 cut(s) 149, 977, 1053
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 4 cut(s) 57, 529, 1040, 1195
TaaI ACNGT 6 cut(s) 23, 98, 278, 716, 890, 1111
TaiI ACGT 3 cut(s) 106, 700, 1031
TaqI TCGA 5 cut(s) 348, 543, 694, 789, 807
TaqII GACCGA 1 cut(s) 866
TasI AATT 3 cut(s) 4, 86, 1130
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 5 cut(s) 224, 606, 726, 779, 824
Tru9I TTAA 5 cut(s) 224, 606, 726, 779, 824
TscAI CASTG 3 cut(s) 246, 591, 1114
TseFI GTSAC 3 cut(s) 338, 948, 1029
TseI GCWGC 4 cut(s) 1004, 1007, 1010, 1140
Tsp45I GTSAC 3 cut(s) 338, 948, 1029
TspDTI ATGAA 5 cut(s) 17, 40, 79, 99, 678
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 3 cut(s) 246, 591, 1114
XapI RAATTY 3 cut(s) 4, 86, 1130
XceI RCATGY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 542
XspI CTAG 3 cut(s) 149, 977, 1053
ZraI GACGTC 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.