Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0019039

Physical Location & Seq

Genomic Coordinates Reverse (-)

61634664 .. 61635513

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0501400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATTTCAGAATCATGGGTCTGGATGCTCCAATCATGACAGCACTGCAGCAGCTACAGCAGCTGGCGGACTTCCCTGAGGAGAACGAGAAGACCTCCAACGCCCCGACCCGGACCTACGTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTTGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGAGGACGAGAAAGAGGGGGTAAAGTATTTGAGGATGGAGAGGAGGGTTGGCAAGTTTATGAGGAAGTTTGTGCTGCCTGAGAATGCTAATGCTGATGCCATTTCTGCTGTTTGCCAAGATGGGGTTCTTACTGTGACTGTGGAGAAGGTGCCACCGCCTCAGCCGAAGACCAAGACTATTGAGGTCAAGAATATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

5.35

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	53 - 156	3.1e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019039)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189951
rosa_laevigata	RLG00000004574
rosa_multiflora	Rmu_co8509437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265020
rosa_rugosa	Rorug06G0501400
rosa_samantha	Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	68, 124, 264, 434
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	111, 400
AflIII	ACRYGT	1 cut(s)	183
AjiI	CACGTC	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	55, 64
AluI	AGCT	2 cut(s)	55, 64
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	49, 52, 61, 352
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	112, 204
AvaII	GGWCC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	98, 452
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	61, 64, 73, 339
BccI	CCATC	2 cut(s)	307, 392
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	112, 204
BfmI	CTRYAG	2 cut(s)	47, 56
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
BlsI	GCNGC	5 cut(s)	51, 54, 63, 266, 354
Bme1390I	CCNGG	2 cut(s)	112, 204
Bme18I	GGWCC	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	112, 204
BmsI	GCATC	2 cut(s)	16, 364
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	98, 452
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	112, 204
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	132, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 400
Bse21I	CCTNAGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	132, 203
BseGI	GGATG	3 cut(s)	31, 247, 318
BseLI	CCNNNNNNNGG	2 cut(s)	111, 400
BseMII	CTCAG	3 cut(s)	69, 348, 452
BseRI	GAGGAG	2 cut(s)	95, 334
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	61, 64, 73, 339
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	112, 152, 203
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	111, 400
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	192, 258
BspACI	CCGC	4 cut(s)	68, 124, 264, 434
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	70, 349, 451
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	132, 203
BssMI	GATC	2 cut(s)	192, 258
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	412, 418
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	78, 357, 438
BstF5I	GGATG	3 cut(s)	31, 247, 318
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	195, 261
BstMBI	GATC	2 cut(s)	192, 258
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
BstNSI	RCATGY	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	110, 202
BstSFI	CTRYAG	2 cut(s)	47, 56
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	61, 64, 73, 339
BstV2I	GAAGAC	2 cut(s)	98, 452
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	31, 247, 318
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	16, 37, 199
CviJI	RGCY	7 cut(s)	55, 64, 137, 143, 155, 208, 442
CviKI_1	RGCY	7 cut(s)	55, 64, 137, 143, 155, 208, 442
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	78, 357, 438
DpnI	GATC	2 cut(s)	194, 260
DpnII	GATC	2 cut(s)	192, 258
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	19, 40, 202
FaiI	YATR	5 cut(s)	17, 38, 140, 200, 338
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	15, 36, 198
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
FokI	GGATG	3 cut(s)	38, 254, 325
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
GluI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	112, 152, 203
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	19, 40, 202
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	112, 152, 203
Hpy188I	TCNGA	2 cut(s)	11, 258
Hpy188III	TCNNGA	4 cut(s)	23, 37, 190, 466
Hpy99I	CGWCG	2 cut(s)	131, 161
HpyAV	CCTTC	2 cut(s)	157, 418
HpyCH4III	ACNGT	2 cut(s)	412, 418
HpyCH4IV	ACGT	3 cut(s)	120, 159, 183
HpyCH4V	TGCA	2 cut(s)	49, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
HpyF3I	CTNAG	3 cut(s)	78, 357, 438
HpySE526I	ACGT	3 cut(s)	120, 159, 183
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	19, 40, 202
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	192, 258
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	8, 50, 90, 125, 165, 201, 216, 218, 369
Lsp1109I	GCAGC	4 cut(s)	61, 64, 73, 339
LweI	GCATC	2 cut(s)	16, 364
MaeII	ACGT	3 cut(s)	120, 159, 183
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	194, 260
MboI	GATC	2 cut(s)	192, 258
MboII	GAAGA	3 cut(s)	103, 286, 457
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	64, 264
MspI	CCGG	3 cut(s)	112, 152, 203
MspR9I	CCNGG	2 cut(s)	112, 204
Mva1269I	GAATGC	1 cut(s)	367
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	58, 61, 383
NciI	CCSGG	2 cut(s)	112, 204
NdeII	GATC	2 cut(s)	192, 258
NlaIII	CATG	3 cut(s)	19, 40, 202
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	51, 54, 63, 266, 354
Ppu21I	YACGTR	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	5 cut(s)	50, 53, 62, 265, 353
Sau3AI	GATC	2 cut(s)	192, 258
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	112, 204
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	16, 364
SfcI	CTRYAG	2 cut(s)	47, 56
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	4 cut(s)	68, 124, 264, 434
SspI	AATATT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	110, 202
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	412, 418
TaiI	ACGT	3 cut(s)	123, 162, 186
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	4 cut(s)	49, 52, 61, 352
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	114
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.