Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019039

Physical Location & Seq

Genomic Coordinates Forward (+)

8251811 .. 8252983

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATTCTTTGTGTGATTACTGTGACAACTTTGCTATGAGTATTGGTTTCATACCCAAGGGGGTCTTCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTAGTACTTGATCTAAATCACACCCTGCTGGCTCTCACAAAACTCAGTGATCTGACTCCAGAAGAAGAAGAATATTTAAACAATACCCAAACACTGCAAGATGTTTTCAAAGTGCAAGCTCCTGATGACAGTATGAGCCCTATGATTATCAAGTTGAGACCCTTTGTTAGAACCTTTCTCAAGAAAGCAAGTGACAAGTTCGAAATGTATGTTTACGAAGATGCTCCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGAGTACTTTGGTCAAAGAGTGATTTCGCGTGAGGATTATTTTTGGAGCAACCACATGGGAAAGAAGCATCTTGATCTTGTGCTTGGCCAGGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGGCATGGATGGAGCAAAATCAAAAGAACATAGCAGTACCAGTGCAAAAGTATCCTTTCTTTAAACAAAGTTGTGGCCAGAAGAGCAGGCGCAAGTCTCTTTGTGAGTTGAAAAATGATGAAGGGGGGATTTATCTTGCAAATGTTCTTCAACGTCTTAGGCGAATACACAGCATGTTCTTTAATGATCAAGTGATGTGTGATAAGGTTTTCGACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGACCTATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAAAGTGATCACCGGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCAGTCACCGGAAGCTTCTTATGTTGAAAAACTAGAGGATCCAGAATCATCGGTGGTGGATGCAGTAGCTGATCATGTTGGAACGTCACCGGCTCCTTGGGTACACCCGAGCTGGATTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCCCTGTTATCACCGAGGAGGGCGAATTTAGTTGCAGGCTTGCAGCTCATATTGGAACGCTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

390

Amino Acids

45.42

Weight (kDa)

8.97

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	49 - 199	4.3e-20	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019039)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189951
rosa_laevigata	RLG00000004574
rosa_multiflora	Rmu_co8509437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265020
rosa_rugosa	Rorug06G0501400
rosa_samantha	Rh7AG106500 Rh7BG109200 Rh7CG111300 Rh7DG109700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	542
AccII	CGCG	1 cut(s)	448
AclWI	GGATC	5 cut(s)	404, 417, 520, 977, 990
AcoI	YGGCCR	2 cut(s)	505, 619
AcsI	RAATTY	3 cut(s)	4, 86, 1130
AfaI	GTAC	4 cut(s)	153, 425, 582, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	813
AgsI	TTSAA	6 cut(s)	70, 256, 655, 695, 971, 1064
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	7 cut(s)	266, 403, 859, 959, 1013, 1056, 1151
AluI	AGCT	7 cut(s)	266, 403, 859, 959, 1013, 1056, 1151
Alw26I	GTCTC	2 cut(s)	298, 645
AlwI	GGATC	5 cut(s)	404, 417, 520, 977, 990
AlwNI	CAGNNNCTG	1 cut(s)	1013
Ama87I	CYCGRG	2 cut(s)	542, 1051
AoxI	GGCC	3 cut(s)	505, 619, 1105
ApaI	GGGCCC	1 cut(s)	1109
ApeKI	GCWGC	1 cut(s)	1148
ApoI	RAATTY	3 cut(s)	4, 86, 1130
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	1105, 1106
AsuHPI	GGTGA	4 cut(s)	902, 942, 1023, 1108
AsuII	TTCGAA	1 cut(s)	348
AvaI	CYCGRG	2 cut(s)	542, 1051
BaeGI	GKGCMC	1 cut(s)	1109
BalI	TGGCCA	2 cut(s)	507, 621
BamHI	GGATCC	2 cut(s)	409, 982
BanII	GRGCYC	2 cut(s)	287, 1109
BbsI	GAAGAC	2 cut(s)	58, 932
BbvI	GCAGC	1 cut(s)	1160
BccI	CCATC	4 cut(s)	388, 547, 766, 931
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	3 cut(s)	730, 907, 1015
BcoDI	GTCTC	2 cut(s)	298, 645
BfaI	CTAG	2 cut(s)	149, 977
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	1 cut(s)	1149
BlsI	GCNGC	1 cut(s)	1150
BmcAI	AGTACT	2 cut(s)	153, 425
Bme1390I	CCNGG	1 cut(s)	509
BmeT110I	CYCGRG	2 cut(s)	542, 1051
BmgT120I	GGNCC	2 cut(s)	1105, 1106
BmiI	GGNNCC	4 cut(s)	411, 984, 1038, 1107
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	3 cut(s)	358, 496, 994
BpiI	GAAGAC	2 cut(s)	58, 932
BpmI	CTGGAG	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	57, 529, 1040, 1119
BsaWI	WCCGGW	2 cut(s)	912, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	813
Bse118I	RCCGGY	1 cut(s)	1033
Bse1I	ACTGG	2 cut(s)	411, 584
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	4 cut(s)	57, 529, 1040, 1119
BseGI	GGATG	3 cut(s)	558, 777, 1009
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	411, 584
BseRI	GAGGAG	2 cut(s)	363, 1136
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	507, 621, 1107
BsiHKCI	CYCGRG	2 cut(s)	542, 1051
BsiSI	CCGG	3 cut(s)	913, 953, 1034
BslI	CCNNNNNNNGG	1 cut(s)	813
BsmAI	GTCTC	2 cut(s)	298, 645
BsnI	GGCC	3 cut(s)	507, 621, 1107
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	2 cut(s)	542, 1051
Bsp119I	TTCGAA	1 cut(s)	348
Bsp120I	GGGCCC	1 cut(s)	1105
Bsp1286I	GDGCHC	2 cut(s)	287, 1109
Bsp143I	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
BspANI	GGCC	3 cut(s)	507, 621, 1107
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	4 cut(s)	411, 984, 1038, 1107
BspPI	GGATC	5 cut(s)	404, 417, 520, 977, 990
BspQI	GCTCTTC	2 cut(s)	620, 936
BspT104I	TTCGAA	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	1033
BsrI	ACTGG	2 cut(s)	411, 584
BssAI	RCCGGY	1 cut(s)	1033
BssECI	CCNNGG	4 cut(s)	57, 529, 1040, 1119
BssMI	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
BssT1I	CCWWGG	3 cut(s)	57, 529, 1040
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	4 cut(s)	23, 98, 278, 890
Bst6I	CTCTTC	2 cut(s)	620, 936
BstBAI	YACGTR	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	5 cut(s)	177, 264, 632, 1142, 1146
BstDEI	CTNAG	6 cut(s)	77, 134, 191, 414, 701, 846
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	3 cut(s)	558, 777, 1009
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	9 cut(s)	160, 199, 412, 496, 528, 733, 910, 985, 1018
BstMAI	GTCTC	2 cut(s)	298, 645
BstMBI	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	1109
BstSNI	TACGTA	1 cut(s)	104
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	1160
BstV2I	GAAGAC	2 cut(s)	58, 932
BstX2I	RGATCY	2 cut(s)	409, 982
BstYI	RGATCY	2 cut(s)	409, 982
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	507, 621, 1107
BtsCI	GGATG	3 cut(s)	558, 777, 1009
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	3 cut(s)	199, 239, 591
Cac8I	GCNNGC	5 cut(s)	177, 264, 632, 1142, 1146
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	1033
Cfr13I	GGNCC	2 cut(s)	1105, 1106
Csp6I	GTAC	4 cut(s)	152, 424, 581, 1046
CviAII	CATG	5 cut(s)	475, 549, 718, 1019, 1094
CviQI	GTAC	4 cut(s)	152, 424, 581, 1046
DdeI	CTNAG	6 cut(s)	77, 134, 191, 414, 701, 846
DpnI	GATC	9 cut(s)	159, 198, 411, 495, 527, 732, 909, 984, 1017
DpnII	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
DraI	TTTAAA	2 cut(s)	225, 607
EaeI	YGGCCR	2 cut(s)	505, 619
Eam1104I	CTCTTC	2 cut(s)	620, 936
EarI	CTCTTC	2 cut(s)	620, 936
Eco105I	TACGTA	1 cut(s)	104
Eco130I	CCWWGG	3 cut(s)	57, 529, 1040
Eco24I	GRGCYC	2 cut(s)	287, 1109
Eco31I	GGTCTC	1 cut(s)	298
Eco88I	CYCGRG	2 cut(s)	542, 1051
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoO109I	RGGNCCY	2 cut(s)	1105, 1106
EcoRI	GAATTC	2 cut(s)	4, 86
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	3 cut(s)	57, 529, 1040
EcoT38I	GRGCYC	2 cut(s)	287, 1109
ErhI	CCWWGG	3 cut(s)	57, 529, 1040
FaeI	CATG	5 cut(s)	478, 552, 721, 1022, 1097
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	5 cut(s)	474, 548, 717, 1018, 1093
FbaI	TGATCA	3 cut(s)	730, 907, 1015
Fnu4HI	GCNGC	1 cut(s)	1149
FokI	GGATG	3 cut(s)	565, 784, 1016
FriOI	GRGCYC	2 cut(s)	287, 1109
Fsp4HI	GCNGC	1 cut(s)	1149
FspBI	CTAG	2 cut(s)	149, 977
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	1 cut(s)	1149
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	507, 621, 1107
HapII	CCGG	3 cut(s)	913, 953, 1034
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	5 cut(s)	478, 552, 721, 1022, 1097
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	2 cut(s)	857, 957
HinfI	GANTC	4 cut(s)	202, 512, 989, 1090
HpaII	CCGG	3 cut(s)	913, 953, 1034
HphI	GGTGA	4 cut(s)	902, 942, 1023, 1108
Hpy166II	GTNNAC	4 cut(s)	101, 112, 361, 1048
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	5 cut(s)	206, 269, 328, 491, 986
Hpy8I	GTNNAC	4 cut(s)	101, 112, 361, 1048
HpyAV	CCTTC	2 cut(s)	659, 868
HpyCH4III	ACNGT	4 cut(s)	23, 98, 278, 890
HpyCH4IV	ACGT	3 cut(s)	103, 697, 1028
HpyCH4V	TGCA	8 cut(s)	244, 262, 589, 683, 1007, 1097, 1140, 1148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	6 cut(s)	77, 134, 191, 414, 701, 846
HpySE526I	ACGT	3 cut(s)	103, 697, 1028
Hsp92II	CATG	5 cut(s)	478, 552, 721, 1022, 1097
HspAI	GCGC	1 cut(s)	634
Ksp22I	TGATCA	3 cut(s)	730, 907, 1015
Kzo9I	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
LguI	GCTCTTC	2 cut(s)	620, 936
LmnI	GCTCC	5 cut(s)	271, 376, 465, 556, 1042
Lsp1109I	GCAGC	1 cut(s)	1160
LweI	GCATC	3 cut(s)	358, 496, 994
MaeI	CTAG	2 cut(s)	149, 977
MaeII	ACGT	3 cut(s)	103, 697, 1028
MaeIII	GTNAC	4 cut(s)	23, 338, 948, 1029
MalI	GATC	9 cut(s)	159, 198, 411, 495, 527, 732, 909, 984, 1017
MboI	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
MflI	RGATCY	2 cut(s)	409, 982
MhlI	GDGCHC	2 cut(s)	287, 1109
MlsI	TGGCCA	2 cut(s)	507, 621
MluCI	AATT	3 cut(s)	4, 86, 1130
MluNI	TGGCCA	2 cut(s)	507, 621
MlyI	GAGTC	3 cut(s)	196, 521, 1099
MmeI	TCCRAC	1 cut(s)	1003
Mox20I	TGGCCA	2 cut(s)	507, 621
MscI	TGGCCA	2 cut(s)	507, 621
MseI	TTAA	5 cut(s)	224, 606, 726, 779, 824
Msp20I	TGGCCA	2 cut(s)	507, 621
MspI	CCGG	3 cut(s)	913, 953, 1034
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeII	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
NlaIII	CATG	5 cut(s)	478, 552, 721, 1022, 1097
NlaIV	GGNNCC	4 cut(s)	411, 984, 1038, 1107
NmuCI	GTSAC	4 cut(s)	23, 338, 948, 1029
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	542
PciSI	GCTCTTC	2 cut(s)	620, 936
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	989
PkrI	GCNGC	1 cut(s)	1150
PleI	GAGTC	3 cut(s)	196, 520, 1098
PpsI	GAGTC	3 cut(s)	196, 520, 1098
Ppu21I	YACGTR	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	4 cut(s)	411, 984, 1038, 1107
PspOMI	GGGCCC	1 cut(s)	1105
PspPI	GGNCC	2 cut(s)	1105, 1106
PspXI	VCTCGAGB	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	2 cut(s)	409, 982
RsaI	GTAC	4 cut(s)	153, 425, 582, 1047
RsaNI	GTAC	4 cut(s)	152, 424, 581, 1046
SapI	GCTCTTC	2 cut(s)	620, 936
SaqAI	TTAA	5 cut(s)	224, 606, 726, 779, 824
SatI	GCNGC	1 cut(s)	1149
Sau3AI	GATC	9 cut(s)	157, 196, 409, 493, 525, 730, 907, 982, 1015
Sau96I	GGNCC	2 cut(s)	1105, 1106
ScaI	AGTACT	2 cut(s)	153, 425
SchI	GAGTC	3 cut(s)	196, 521, 1099
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	287, 1109
SfaNI	GCATC	3 cut(s)	358, 496, 994
Sfr274I	CTCGAG	1 cut(s)	542
SfuI	TTCGAA	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	326, 542
SmoI	CTYRAG	2 cut(s)	326, 542
SnaBI	TACGTA	1 cut(s)	104
Sse9I	AATT	3 cut(s)	4, 86, 1130
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	149, 977
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	3 cut(s)	57, 529, 1040
TaaI	ACNGT	4 cut(s)	23, 98, 278, 890
TaiI	ACGT	3 cut(s)	106, 700, 1031
TaqI	TCGA	4 cut(s)	348, 543, 756, 789
TaqII	GACCGA	1 cut(s)	866
TasI	AATT	3 cut(s)	4, 86, 1130
TatI	WGTACW	2 cut(s)	151, 423
TfiI	GAWTC	1 cut(s)	989
Tru1I	TTAA	5 cut(s)	224, 606, 726, 779, 824
Tru9I	TTAA	5 cut(s)	224, 606, 726, 779, 824
TscAI	CASTG	3 cut(s)	199, 246, 591
TseFI	GTSAC	4 cut(s)	23, 338, 948, 1029
TseI	GCWGC	1 cut(s)	1148
Tsp45I	GTSAC	4 cut(s)	23, 338, 948, 1029
TspDTI	ATGAA	5 cut(s)	17, 40, 79, 99, 678
TspRI	CASTG	3 cut(s)	199, 246, 591
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	3 cut(s)	4, 86, 1130
XceI	RCATGY	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	542
XspI	CTAG	2 cut(s)	149, 977
ZrmI	AGTACT	2 cut(s)	153, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.